jalview.git
2021-03-15 Jim ProcterMerge branch 'releases/Release_2_11_1_Branch' master
2021-03-09 Jim ProcterJAL-3816 release date updated to 9th March Release_2_11_1_4
2021-03-05 Jim ProcterJAL-3816 release date set for 8th March and updated...
2021-03-05 Jim ProcterJAL-3816 new known defects JAL-3705 and JAL-3806
2021-03-04 Jim ProcterRevert "Merge branch 'bug/JAL-3806_mappingCoversSequenc...
2021-03-04 Jim ProcterRevert "JAL-3816 release notes for JAL-3806"
2021-02-26 Jim ProcterJAL-3816 release notes for JAL-3806
2021-02-26 Jim ProcterMerge branch 'bug/JAL-3806_mappingCoversSequence' into... bug/JAL-3806_mappingCoversSequence
2021-02-26 Jim ProcterJAL-3816 JAL-3814 JAL-3813 JAL-3812 JAL-3811 JAL-3818...
2021-02-24 Jim ProcterMerge branch 'bug/JAL-3818_jmolDeadlock' into releases...
2021-02-24 Jim ProcterMerge branch 'releases/Release_2_11_1_4_debianpatches...
2021-02-12 Ben SoaresJAL-3521 High quality file icons for jalview associated... releases/Release_2_11_1_4_debianpatches
2021-02-11 gmungocJAL-3818 process Jmol callbacks in AWT thread bug/JAL-3818_jmolDeadlock
2021-02-10 Ben SoaresJAL-3521 Change grouped Jalview windows on linux taskba...
2021-02-10 Ben SoaresJAL-3521 Changed wording of INSTALLATION in source...
2021-02-08 Ben SoaresJAL-3521 Adding a build_properties into sourceDist...
2021-02-08 Ben SoaresJAL-3521 Adjusted wrapper shell script and .desktop...
2021-02-07 Jim ProcterJAL-3816 bump version number and cut release notes
2021-02-07 Jim ProcterJAL-3815 default /etc/jalview_properties under utils...
2021-02-06 Ben SoaresJAL-3251 debian build using maven, simplified build...
2021-02-06 Ben SoaresJAL-3521 Moved the debian build.gradle to utils/debian...
2021-02-05 Jim ProcterMerge branch 'task/JAL-3521_Slimmed_down_build.gradle_f...
2021-02-05 Jim ProcterMerge branch 'releases/Release_2_11_1_4_debianpatches...
2021-02-05 Jim ProcterJAL-3814 don’t automatically launch the news browser...
2021-02-05 Jim ProcterJAL-3813 NOIDENTIFIERSSERVICE preference disables jalvi...
2021-02-05 Jim ProcterJAL-3812 new argument ‘-nohtmltemplates’ and user prefe...
2021-02-05 Jim ProcterJAL-3811 document SHOW_JWS2_SERVICES user preference...
2021-02-05 Jim ProcterJAL-3814 NONEWS property
2021-02-04 gmungocJAL-3806 fix and test for one-to-many sequence mapping... bug/JAL-3806_mappingCoversCDS_reprise
2021-01-28 gmungocJAL-3806 more lax allowance (3 positions) for stop...
2021-01-26 Ben SoaresJAL-3521 Updating file opening marker to %u
2021-01-26 Ben SoaresJAL-3521 Debian mime-type and desktop helper files...
2020-11-19 Ben SoaresJAL-3521 removed unnecessary parts of the ext project... task/JAL-3521_Slimmed_down_build.gradle_for_debian
2020-11-19 Ben SoaresJAL-3521 Minimal plugins and tasks needed to run tests...
2020-10-29 Jim ProcterMerge branch 'releases/Release_2_11_1_Branch'
2020-10-29 Jim ProcterJAL-3766 what’s new and release notes for 2.11.1.3 Release_2_11_1_3
2020-10-29 Jim ProcterJAL-3759 fix compilation error for test
2020-10-29 Jim ProcterJAL-3766 release notes for JAL-3759
2020-10-29 Jim Procter JAL-3759 exclude hidden columns when processing...
2020-10-29 Jim ProcterMerge branch 'documentation/JAL-3766_relnotes' into...
2020-10-29 Jim ProcterJAL-3766 release notes for JAL-3765 JAL-3763 JAL-3760...
2020-10-29 Jim ProcterMerge branch 'patch/JAL-3700_JAL-3748_JAL-3763_for_2_11...
2020-10-29 Ben SoaresJAL-3248 Fixed path typos in building.md/html and corre...
2020-10-29 gmungocJAL-3700 mapped sequence group includes short (or all... patch/JAL-3700_JAL-3748_JAL-3763_for_2_11_1_3
2020-10-28 Jim ProcterJAL-3725 fix tests for EMBLFlatFile parser when mapping...
2020-10-28 Jim ProcterJAL-3725 patch EMBL flat file to exclude stop codon...
2020-10-28 gmungocJAL-3725 restrict mapped virtual feature location to...
2020-10-28 gmungocJAL-3725 helper methods for computing mapped feature...
2020-10-28 gmungocJAL-3725 exclude stop codon from CDS-to-protein mapping
2020-10-28 Jim ProcterMerge branch 'bug/JAL-3760_protsTreatedAsNucleotides...
2020-10-28 Ben SoaresJAL-3248 Added step to create the eclipse files before...
2020-10-27 Jim ProcterJAL-3768 noticed failure of test when run as part of...
2020-10-27 Jim ProcterJAL-3700 JAL-3748 JAL-3763 don’t add stop codon via...
2020-10-27 Jim Procterupdate test for JAL-3763 redact shared DS sequences...
2020-10-22 gmungocJAL-3763 Javadoc, check for null, additional tests
2020-10-22 gmungocJAL-3751 only merge strictly contiguous ranges of mappings
2020-10-22 gmungocJAL-3763 test coverage for AlignedCodonFrame.markMapped...
2020-10-22 gmungocJAL-3700 JAL-3763 create datasets for test sequences
2020-10-22 gmungocJAL-3763 failsafe check for null
2020-10-22 gmungocJAL-3763 refactored getCoveringMapping for virtual...
2020-10-22 gmungocJAL-3763 always make a new dataset sequence for CDS...
2020-10-22 gmungocJAL-3700 additions and corrections to unit tests
2020-10-21 Jim ProcterJAL-3766 release notes for JAL-3611 JAL-3765
2020-10-21 Jim ProcterMerge branch 'releases/Release_2_11_1_Branch' of source...
2020-10-21 Jim ProcterMerge branch 'bug/JAL-3765_Find_bugs_in_21112' into...
2020-10-21 Jim ProcterJAL-3766 cut new patch release
2020-10-21 Jim ProcterMerge branch 'releases/Release_2_11_1_Branch'
2020-10-20 Jim ProcterJAL-3765 fix test bug/JAL-3765_Find_bugs_in_21112
2020-10-20 Jim Procterfix for JAL-3765
2020-10-19 Jim ProcterJAL-3765 simple test that findAll finds all matches...
2020-10-15 Ben SoaresJAL-3611 added quotation marks for appdir argument...
2020-09-29 Jim ProcterJAL-3760 fix tests for changed behaviour bug/JAL-3760_protsTreatedAsNucleotides
2020-09-29 Jim ProcterJAL-3760 refactor nucleotide proportion test to per...
2020-09-25 Ben SoaresJAL-3577 Removed default JALVIEW_VERSION from gradle...
2020-09-25 Jim ProcterJAL-3758 tweak what’s new for 2.11.1.2! Release_2_11_1_2
2020-09-25 Jim ProcterJAL-3758 release Fri 25th Sep
2020-09-25 Jim ProcterMerge branch 'releases/Release_2_11_1_Branch' of source...
2020-09-24 Ben SoaresJAL-3577 Quick fix adding quotation marks for findPrope...
2020-09-24 Jim ProcterJAL-3758 2.11.1.2 patch release notes and version bump
2020-09-24 Jim ProcterJAL-3757 JAL-3689 use AppletFormat.checkProtocol to...
2020-09-23 Ben SoaresJAL-3757 JAL-3689 Fixed checks for URLs by adding check...
2020-09-23 Ben SoaresJAL-3633 ensure check both or https:// for urls
2020-09-23 Jim ProcterJAL-3748 not testing for sequence’s containment in... bug/JAL-3700_JAL-3748_reconstructCDSafterProteinMSA_for2_11_1_2
2020-09-23 Jim ProcterJAL-3748 fix compilation error
2020-09-23 Jim ProcterJAL-3748 maximal test for JAL-3748 using covid19 CDS...
2020-09-23 Jim ProcterJAL-3748 more tests verifying reconstruction of Alignem...
2020-09-23 Jim ProcterJAL-3748 reusable assert to trace specific issues with...
2020-09-23 Jim ProcterJAL-3748 allow AlignedCodonFrame.covers to optionally...
2020-09-22 Jim ProcterJAL-3748 test data for SplitFrameTest
2020-09-22 Jim ProcterJAL-3748 don’t trash start/end on SequenceI reconstruct...
2020-09-22 Jim ProcterJAL-3748 simple test for SeqCigar preservation of start...
2020-09-22 Jim ProcterJAL-3748 additional asserts to verify start/end after...
2020-09-17 Jim ProcterMerge branch 'releases/Release_2_11_1_Branch'
2020-09-17 Jim ProcterJAL-3675 release notes for JAL-3750 JAL-3751 Release_2_11_1_1
2020-09-17 Jim ProcterMerge branch 'patch/JAL-3750_JAL-3741_https_patch'...
2020-09-17 Jim ProcterJAL-3741 http to https (and jar to jvp for exampleFile...
2020-09-17 Jim ProcterJAL-3750 parse protocol before checking if argument...
2020-09-17 Jim ProcterJAL-3675 patch release date 17th September 2020
2020-09-16 Jim ProcterJAL-3748 preserve sequence IDs from original alignment...
2020-09-16 Jim ProcterJAL-3748 recover complement alignment from complement...
next