jalview.git
2020-10-21 Mateusz WaronwyJAL-3690 Documentation for AlignCalcManagerI2
2020-10-21 Mateusz WarownyJAL - 3690 AlignCalc rebuilt - FutureTask-based manager
2020-07-22 Mateusz WarownyJAL-3690 changed AWSThread to use Timer instead
2020-07-20 Mateusz WarownyJAL-3690 alternative servers menu fix
2020-07-17 Mateusz WarownyJAL-3690 restore jws1 JPred
2020-07-16 Mateusz WarownyJAL-3690 switching to CompletableFuture to allow chaining
2020-07-15 Mateusz WarownyJAL-3690 mark JalviewChangeSupport as deprecated
2020-07-15 Mateusz WarownyJAL-3690 refactoring web-services discovery
2020-07-09 Mateusz WarownyMerge branch 'feature/JAL-3686_slivka_client_js_update... alpha/merge_212_JalviewJS_2112
2020-07-08 Mateusz WarownyJAL-3683 retrieve job status to output stream feature/JAL-3686_slivka_client_js_update
2020-07-08 Mateusz WarownyJAL-6386 update slivka client for j2s compatibility
2020-05-18 Jim ProcterMerge branch 'alpha/JAL-3362_Jalview_212_alpha' into...
2020-05-18 gmungocJAL-3529 test updated for revised signature of getDBRefs()
2020-05-18 gmungocMerge branch 'Jalview-JS/develop' into develop
2020-05-18 gmungocJAL-3613 remove debug code committed in error
2020-05-01 gmungocJAL-3613 check sequence overlap when matching search...
2020-04-23 Jim ProcterMerge branch 'develop' into alpha/JAL-3362_Jalview_212_...
2020-04-23 Jim ProcterMerge branch 'alpha/JAL-3066_Jalview_212_slivka-integra...
2020-04-22 soaresJAL-3225 save auto formatting settings in org.eclipse...
2020-04-21 Jim ProcterMerge branch 'documentation/JAL-3407_2.11.1_release...
2020-04-21 Jim ProcterJAL-3407 add GPL license to Jalview source files
2020-04-21 Jim ProcterJAL-3407 release notes - JAL-247 - for auto-set-ID...
2020-04-21 Jim ProcterMerge branch 'documentation/JAL-3407_2.11.1_release...
2020-04-21 Jim ProcterJAL-3407 fix JAL-3574 - remove from known issues for...
2020-04-21 Jim ProcterMerge branch 'documentation/JAL-3407_2.11.1_release...
2020-04-21 Jim ProcterJAL-3574 JAL-3407 release notes
2020-04-21 Jim ProcterMerge branch 'bug/JAL-3574filterByPOS' into documentati...
2020-04-21 Jim ProcterMerge branch 'documentation/JAL-3407_2.11.1_release...
2020-04-21 Jim ProcterJAL-3407 add and document ComputePeptideVariants.groovy
2020-04-21 Ben SoaresJAL-3577 changed default RELEASE dir in build.gradle...
2020-04-21 Jim ProcterMerge branch 'develop' of source.jalview.org/git/jalvie...
2020-04-21 Jim ProcterJAL-3567 JAL-3407 document sequence features report...
2020-04-21 gmungocJAL-3210 try adding setup method to unit test failing...
2020-04-21 gmungocJAL-1889 corrected wait for consensus to be calculated
2020-04-21 Ben SoaresJAL-3577 Added newer install dirs to the deletion list...
2020-04-21 Jim ProcterMerge branch 'bug/JAL-3567virtualFeatureCoordinates...
2020-04-21 Jim ProcterJAL-367 code tidy
2020-04-21 Jim ProcterJAL-3567 translated rather than imputed peptide
2020-04-21 gmungocJAL-3603 load annotation file from RELATIVE_URL in...
2020-04-21 Ben SoaresJAL-3602 Added configuration for enforced use of UTF...
2020-04-17 gmungocJAL-3567 unit tests for linked feature tooltips
2020-04-17 BobHansonadded .gitignore paths
2020-04-16 BobHansonJAL-3587 Load Project bug
2020-04-16 gmungocJAL-3567 adjust layout of linked feature report, unit...
2020-04-16 gmungocJAL-3567 added 'imputed by Jalview' to protein conseque...
2020-04-16 gmungocJAL-3567 report mapped location for virtual features...
2020-04-14 Jim ProcterJAL-3407 JAL-3529 release notes
2020-04-14 Jim ProcterMerge branch 'bug/JAL-3529_uniprotidsinstockholm' into...
2020-04-14 Jim ProcterJAL-3529 revert ordering of DBRef addition so it reflec...
2020-04-14 Jim ProcterJAL-3597 improved Memory test suite by detecting base...
2020-04-14 Jim ProcterJAL-3407 release date set to 16th April, known issue...
2020-04-14 Jim ProcterMerge branch 'testing/JAL-3577_jalviewversion_autoset_f...
2020-04-14 gmungocJAL-3583 remove debug logging, Javadoc added
2020-04-13 gmungocJAL-3574 test coverage corners bug/JAL-3574filterByPOS
2020-04-13 gmungocJAL-3574 Matcher with integer/long value pattern (e...
2020-04-12 gmungocJAL-3596 change redacted
2020-04-12 gmungocJAL-3596 don't draw text over features if Show Text...
2020-04-12 gmungocJAL-3583 consistent last[Formatted]Tooltip, show once...
2020-04-09 BobHansonJAL-3587 save and reload project file fix
2020-04-09 Ben SoaresJAL-3588 Remove Examples folder in windows Program...
2020-04-09 Jim ProcterJAL-3577 automatically configure JALVIEW_VERSION for... testing/JAL-3577_jalviewversion_autoset_fixed
2020-04-08 BobHansonJAL-3253 SwingJS upgrade including J11 transpiler 3...
2020-04-08 BobHansonJAL-3253 merge of new SwingJS api
2020-04-07 soaresmerge from develop: the fixy bit merge/Jalview-JS_develop_with_develop_build.gradle_gradle.properties_utils_install4j
2020-04-07 soaresmerge from develop: the rest of the changes
2020-04-07 soaresmerge from develop: Most of the changes
2020-04-07 BobHansonJAL-3589 (old Platform) fix for Jalvew-JS/develop only.
2020-04-07 gmungocJAL-3210 fudge for JalviewJS to avoid IntervalStore...
2020-04-07 Ben SoaresJAL-3577 improvement to non-release DMG background... task/JAL-3577_Jalview_Test_installers
2020-04-07 Ben SoaresMerge branch 'task/JAL-3577_Jalview_Test_installers...
2020-04-07 Ben SoaresJAL-3577 Added DEVELOP DMG styling. Improved TEST-RELEA...
2020-04-06 Ben SoaresJAL-3577 Fixed Jalview Programme Group in Windows menu...
2020-04-06 Jim ProcterJAL-3407 redact java 8 incompatible type inference
2020-04-06 gmungocJAL-3581 no hidden sequence marker if hidden markers...
2020-04-06 Jim ProcterJAL-3407 updated release date to Thursday 9th April...
2020-04-06 gmungocJAL-3581 no hidden sequence marker if hidden markers...
2020-04-06 Ben SoaresJAL-3577 Moved application Categories for freedesktop...
2020-04-06 gmungocMerge branch 'develop' into Jalview-JS/develop
2020-04-06 Ben SoaresJAL-3577 removed debugging
2020-04-06 Ben SoaresMerge branch 'task/JAL-3577_Jalview_Test_installers...
2020-04-06 Ben SoaresJAL-3577 Added existing and new Application IDs for...
2020-04-06 gmungocJAL-3579 no Feature Editor if features not shown
2020-04-06 Ben SoaresJAL-3577 Changed shortName to INTERNAL_ID
2020-04-05 Ben SoaresJAL-3577 Changed Windows internal ID to a new value...
2020-04-05 Ben SoaresJAL-3577 Changed Windows internal ID to a new value...
2020-04-04 Ben SoaresJAL-3577 Added DS_Store for Test release to look like...
2020-04-03 Ben SoaresJAL-3577 Added a jalviewt scheme ONLY to TEST-RELEASE...
2020-04-03 Ben SoaresJAL-3577 cleaned up old DMG files. Added NON-RELEASE...
2020-04-02 Ben SoaresJAL-3577 First attempt at new folder names
2020-04-02 Ben SoaresJAL-3572 Added getdown Implementation-Version to getdow...
2020-04-02 Ben SoaresMerge branch 'improvement/JAL-3394_added_categories_to_...
2020-04-01 soaresJAL-3438 Added spotless task to use the utils/eclipse...
2020-04-01 soaresJAL-3225 tasks to create extra desired settings for...
2020-04-01 soaresMerge branch 'Jalview-JS/develop' of https://source...
2020-03-31 Jim ProcterMerge branch 'documentation/Release_2_11_1_Branch'...
2020-03-31 Jim ProcterJAL-3407 basic doc for releasing jalview - will be...
2020-03-31 Jim ProcterJAL-3407 updated release date to 2nd April, and first...
2020-03-31 gmungocMerge branch 'develop' into Jalview-JS/develop
2020-03-31 gmungocJAL-1889 better (?) wait for Conservation thread
2020-03-31 soaresJAL-3248 quick fix to not remove doc/building.html...
next