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jalview.git
2012-07-03 jprocterJAL-961 allow calcId to be specified independently... commit | commitdiff | tree | snapshot
2012-07-03 jprocterJAL-974 - broken copy of feature settings commit | commitdiff | tree | snapshot
2012-07-02 jprocterJAL-1129 progress bar - this patch doesn't provide... commit | commitdiff | tree | snapshot
2012-07-02 jprocterJAL-968 incremental - PNG/EPS output has annotation... commit | commitdiff | tree | snapshot
2012-07-02 jproctertidy imports commit | commitdiff | tree | snapshot
2012-07-02 jprocterJAL-974 create graduated feature colours for annotation... commit | commitdiff | tree | snapshot
2012-07-02 jprocterJAL-974 - use refactored methods on AlignmentPanel commit | commitdiff | tree | snapshot
2012-07-02 jprocterJAL-974 - refactor FeatureRenderer constructor to Align... commit | commitdiff | tree | snapshot
2012-07-01 jprocterJAL-1117 alleviate lock starvation commit | commitdiff | tree | snapshot
2012-07-01 jprocterensure all annotation dependent rendering gets refreshed commit | commitdiff | tree | snapshot
2012-06-29 jprocterJAL-1065 JAL-1066 ensure non-residue based schemes... commit | commitdiff | tree | snapshot
2012-06-29 jprocterJAL-1065 JAL-1066 allow different lookup tables for... commit | commitdiff | tree | snapshot
2012-06-26 jprocterJAL-899 added groovy support to develop branch commit | commitdiff | tree | snapshot
2012-06-20 jprocterformatting commit | commitdiff | tree | snapshot
2012-06-19 jprocterJAL-976 JAL-975 JAL-1119 - pass on any existing paramet... commit | commitdiff | tree | snapshot
2012-06-19 jprocterJAL-975 JAL-1119 - prototype adjustable AACons paramete... commit | commitdiff | tree | snapshot
2012-06-19 jprocterJAL-975 - doh! valid result if width matches *ungapped... commit | commitdiff | tree | snapshot
2012-06-19 jprocterJAL-975 - bespoke AACons settings object to save curren... commit | commitdiff | tree | snapshot
2012-06-19 jprocterpatch for JAL-1172 ensure option's default value is... commit | commitdiff | tree | snapshot
2012-06-19 jprocterJAL-961 JAL-975 extend api to support removal of worker... commit | commitdiff | tree | snapshot
2012-06-19 jprocterJAL-975 - ensure we only submit ungapped, padded alignm... commit | commitdiff | tree | snapshot
2012-06-15 jprocterformatting commit | commitdiff | tree | snapshot
2012-06-15 jprocterJAL-1125 option to switch between Jalview and SeqSpace... commit | commitdiff | tree | snapshot
2012-06-15 jprocterfix JAL-1122 commit | commitdiff | tree | snapshot
2012-06-15 jprocterJAL-1123 - make clear where off-by-one error was occuri... commit | commitdiff | tree | snapshot
2012-06-15 jprocterJAL-535 - refactored core PCA viewer code to viewmodel commit | commitdiff | tree | snapshot
2012-06-15 jprocterJAL-535 refactored core code from PCA viewer to viewmodel. commit | commitdiff | tree | snapshot
2012-06-15 jprocterJAL-1120 patch for desktop commit | commitdiff | tree | snapshot
2012-06-15 jprocterpatch for JAL-1121 - reset button and slightly wider... commit | commitdiff | tree | snapshot
2012-06-15 jprocterJAL-535 refactoring todo commit | commitdiff | tree | snapshot
2012-06-15 jprocterExtended IProgressIndicator with method to check if... commit | commitdiff | tree | snapshot
2012-06-15 jprocterMerge branch 'JAL-1013_pca_rna_dna' into develop commit | commitdiff | tree | snapshot
2012-06-14 jprocterJAL-975 JAL-1002 ensure custom parameters are actually... commit | commitdiff | tree | snapshot
2012-06-14 jprocterJAL-1115 - synchronized access to group list commit | commitdiff | tree | snapshot
2012-06-14 jprocterJAL-976 - make sure annotation panel is updated to... commit | commitdiff | tree | snapshot
2012-06-14 jprocterJAL-961 JAL-976 kill any existing AACon job if a new... commit | commitdiff | tree | snapshot
2012-06-14 jprocterJAL-1003 visual delay when running a sequence or alignm... commit | commitdiff | tree | snapshot
2012-06-14 jprocterJAL-961 JAL-976 tweaked way that AACons client is regis... commit | commitdiff | tree | snapshot
2012-06-14 jprocterformatting commit | commitdiff | tree | snapshot
2012-06-14 jprocterformatting commit | commitdiff | tree | snapshot
2012-06-14 jprocterJAL-1118 - hack to try and get rid of flicker. consider... commit | commitdiff | tree | snapshot
2012-06-14 jprocterJAL-1118 WIP - flag to mark if image buffer has just... commit | commitdiff | tree | snapshot
2012-06-14 jprocterJAL-1115 trap exception arising from race condition... commit | commitdiff | tree | snapshot
2012-06-14 jprocterJAL-968 javadoc and return flag indicating if any of... commit | commitdiff | tree | snapshot
2012-06-14 jprocterJAL-961 ensure we only add one instance of a worker... commit | commitdiff | tree | snapshot
2012-06-14 jprocterJAL-961 potentially helpful println statements when... commit | commitdiff | tree | snapshot
2012-06-13 jprocterJAL-1115 refactor base collection for Alignment from... commit | commitdiff | tree | snapshot
2012-06-13 jprocterJAL-1116 - location where vamsas sync failure occurs commit | commitdiff | tree | snapshot
2012-06-13 jprocterjavatidy commit | commitdiff | tree | snapshot
2012-06-12 jprocterJAL-1115 refactor reordering code operating directly... commit | commitdiff | tree | snapshot
2012-06-12 jprocterJAL-1115 refactor base collection for Alignment from... commit | commitdiff | tree | snapshot
2012-06-12 jprocterJAL-1115 - use local reference for annotation row commit | commitdiff | tree | snapshot
2012-06-12 jprocterJAL-961, JAL-1115 - pending test to ensure only one... commit | commitdiff | tree | snapshot
2012-06-07 jprocterjavatidy commit | commitdiff | tree | snapshot
2012-06-07 jprocterJAL-967, JAL-1114, JAL-1115 more concurrent access... commit | commitdiff | tree | snapshot
2012-06-07 jprocterjavatidy commit | commitdiff | tree | snapshot
2012-06-07 jprocterfix for bug introduced with commit:b81d4d7d46ea8b1c89df... commit | commitdiff | tree | snapshot
2012-06-07 jprocterjavatidy commit | commitdiff | tree | snapshot
2012-06-07 jprocterJAL-967, JAL-1114, JAL-1115 - modified render and calcu... commit | commitdiff | tree | snapshot
2012-06-07 jprocterJAL-976 ensure job id gets written out if there's an... commit | commitdiff | tree | snapshot
2012-06-04 jprocterjavatidy commit | commitdiff | tree | snapshot
2012-05-31 jprocterjavatidy commit | commitdiff | tree | snapshot
2012-05-31 jprocterformatting commit | commitdiff | tree | snapshot
2012-05-30 jprocterJAL-969 - refactor colourscheme machinery from GUI... commit | commitdiff | tree | snapshot
2012-05-30 jprocterJAL-1109 JAL-1065 resolve t-coffee score scheme by... commit | commitdiff | tree | snapshot
2012-05-30 jprocterupdated schema to store and recover belowAlignment... commit | commitdiff | tree | snapshot
2012-05-30 jprocterJAL-1114 - refactor methods handling Vectors and Hashta... commit | commitdiff | tree | snapshot
2012-05-30 jprocterformatting commit | commitdiff | tree | snapshot
2012-05-30 jprocterformatting commit | commitdiff | tree | snapshot
2012-05-24 jprocterTODO: JAL-1108 commit | commitdiff | tree | snapshot
2012-05-24 jprocterJAL-1078 - removed 'Load Score File' menu item and... commit | commitdiff | tree | snapshot
2012-05-24 jprocterJAL-1065 per sequence and per-alignment scores added... commit | commitdiff | tree | snapshot
2012-05-24 jprocterJAL-1065 - ensure null entries in annotation row so... commit | commitdiff | tree | snapshot
2012-05-24 jproctertodo: JAL-1105 commit | commitdiff | tree | snapshot
2012-05-24 jproctertodo: JAL-1108 commit | commitdiff | tree | snapshot
2012-05-24 jprocterensure annotation isn't added twice - note - this could... commit | commitdiff | tree | snapshot
2012-05-24 jprocterJAL-1107 - documentation explaining '*' and '+' in... commit | commitdiff | tree | snapshot
2012-05-24 jprocterpatch for occasional NPE when applet is quit commit | commitdiff | tree | snapshot
2012-05-23 jprocterJAL-1078 - extend applet cut'n'paste features/annotatio... commit | commitdiff | tree | snapshot
2012-05-23 jprocterJAL-1067 report any warning messages to user commit | commitdiff | tree | snapshot
2012-05-23 jprocterTODO for JAL-976 commit | commitdiff | tree | snapshot
2012-05-23 jproctertodo for JAL-1106 commit | commitdiff | tree | snapshot
2012-05-23 jprocterJAL-1066,JAL-1068,JAL-961 - use alignment annotation... commit | commitdiff | tree | snapshot
2012-05-23 jprocterJAL-1067, JAL-1105 - refactor parser to fit Jalview... commit | commitdiff | tree | snapshot
2012-05-23 jprocterJAL-961 - annotatable datamodel objects can be queried... commit | commitdiff | tree | snapshot
2012-05-23 jprocterJAL-1102 todos and status updates when data is added commit | commitdiff | tree | snapshot
2012-05-23 jproctertodo JAL-1104 : functions to refactor commit | commitdiff | tree | snapshot
2012-05-23 jproctertodo: blocked by JAL-1104 commit | commitdiff | tree | snapshot
2012-05-23 jprocterJAL-958 - ensure logo is rendered even if consensus... commit | commitdiff | tree | snapshot
2012-05-22 jprocterupdate the copy constructor commit | commitdiff | tree | snapshot
2012-05-22 jprocterJAL-1065,JAL-1066 propagated notification of coloursche... commit | commitdiff | tree | snapshot
2012-05-22 jprocterJAL-1065,JAL-1066 - propagated 863467bf6c59c0bc5368c8f3... commit | commitdiff | tree | snapshot
2012-05-22 jprocterMerge remote-tracking branch 'origin/Tcoffee_JAL-1065... commit | commitdiff | tree | snapshot
2012-05-16 jprocterwarning dialog - fixes JAL-1099 commit | commitdiff | tree | snapshot
2012-05-16 jprocterfixed JAL-1086: pass column index so colourscheme profi... commit | commitdiff | tree | snapshot
2012-05-16 jprocterJAL-958 - don't try to draw all zero profiles commit | commitdiff | tree | snapshot
2012-05-16 jprocterJAL-958 JAL-1086 formatting and remove old code commit | commitdiff | tree | snapshot
2012-05-14 jprocterpack before displaying splashscreen to ensure its prefe... commit | commitdiff | tree | snapshot
2012-05-14 jprocterformatting commit | commitdiff | tree | snapshot
2012-05-14 jprocterJAL-1097 - ensure replace comma for semicolon always... commit | commitdiff | tree | snapshot
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