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jalview.git
2012-08-28 jprocterJAL-676 JAL-1001 - simple menu item to access documenta... commit | commitdiff | tree | snapshot
2012-08-28 jprocterformatting commit | commitdiff | tree | snapshot
2012-08-28 jprocterJAL-1066 basic gui and functionality for per-sequence... commit | commitdiff | tree | snapshot
2012-08-28 jprocterJAL-1066 - per-sequence colouring with sequence associa... commit | commitdiff | tree | snapshot
2012-08-28 jprocterformatting commit | commitdiff | tree | snapshot
2012-08-28 jprocterJAL-1145 patch: sequence associated annotation with... commit | commitdiff | tree | snapshot
2012-08-28 jprocterJAL-974 create mixture of sequence features marking... commit | commitdiff | tree | snapshot
2012-08-28 jprocterJAL-974 refactored creation of Annotation rows from... commit | commitdiff | tree | snapshot
2012-08-28 jprocterJAL-974 JAL-975 try to cope with temporary server error... commit | commitdiff | tree | snapshot
2012-08-28 jprocterJAL-1136 sometimes there are no parameters associated... commit | commitdiff | tree | snapshot
2012-08-28 jprocterJAL-1001 - hack to extract the global URL for a service... commit | commitdiff | tree | snapshot
2012-08-28 jprocterjavadoc and note about broken semantics for findIndex commit | commitdiff | tree | snapshot
2012-08-28 jprocterJAL-1149 patch commit | commitdiff | tree | snapshot
2012-08-28 jprocterJAL-1148 reinstate sequence references for annotation... commit | commitdiff | tree | snapshot
2012-08-24 jprocterJAL-1087 skip processing any of the other command line... commit | commitdiff | tree | snapshot
2012-08-24 jprocterJAL-1143 - ensure we revalidate annotation panel height... commit | commitdiff | tree | snapshot
2012-08-23 jprocterJAL-975 JAL-951 test class for viewing layout for JABAW... commit | commitdiff | tree | snapshot
2012-08-07 jprocterJAL-1137 clean up old-style menu code and look commit | commitdiff | tree | snapshot
2012-08-07 jprocterJAL-1137 JAL-975 simpler menu for the AACon service... commit | commitdiff | tree | snapshot
2012-08-07 jprocterDebug message associated with TODO for JAL-1136 - re... commit | commitdiff | tree | snapshot
2012-08-07 jprocterJAL-975 JAL-1137 debug messages for web service client... commit | commitdiff | tree | snapshot
2012-08-05 jprocterJAL-1131 - todos for later versions commit | commitdiff | tree | snapshot
2012-08-05 jprocterJAL-1131 ensure new dataset sequence is created if... commit | commitdiff | tree | snapshot
2012-08-03 jprocterJAL-1136 Ensure asynchronously calculated autoannotatio... commit | commitdiff | tree | snapshot
2012-08-03 jprocterJAL-1136 JAL-811 JAL-812 store/recover autocalc alignme... commit | commitdiff | tree | snapshot
2012-08-03 jprocterJAL-1136 fix logic for recovering AACons params commit | commitdiff | tree | snapshot
2012-08-03 jprocterJAL-1136 store ws-parameter list as XML element content... commit | commitdiff | tree | snapshot
2012-08-03 jprocterJAL-1136 allow parameter sets to be transferred across... commit | commitdiff | tree | snapshot
2012-08-03 jprocterJAL-1136 less code-dependent formula for creating serve... commit | commitdiff | tree | snapshot
2012-08-03 jprocterJAL-1136 - fix abstraction for parameter container... commit | commitdiff | tree | snapshot
2012-08-03 jprocterJAL-1115 reference to List<SequenceI> passed in 'alignm... commit | commitdiff | tree | snapshot
2012-08-02 jprocterJAL-976 better logging/error reporting for disorder... commit | commitdiff | tree | snapshot
2012-08-02 jprocterJAL-976 JAL-958 todo list for release commit | commitdiff | tree | snapshot
2012-08-01 jprocterJAL-976 ensure protein disorder services appears in... commit | commitdiff | tree | snapshot
2012-08-01 jprocterJAL-976 don't clear menu out before adding jabaws servi... commit | commitdiff | tree | snapshot
2012-08-01 jprocterJAL-1066 patch regression ac33424148b2a4de29b3ca43f9411... commit | commitdiff | tree | snapshot
2012-07-08 jprocterdocumentation for PCA calculation parameters and reset... commit | commitdiff | tree | snapshot
2012-07-08 jproctera209409239 (JAL-976 - add support for storing service... commit | commitdiff | tree | snapshot
2012-07-08 jprocterJAL-976 clean out associated annotation commit | commitdiff | tree | snapshot
2012-07-08 jprocterJAL-976 implement additional calcId method commit | commitdiff | tree | snapshot
2012-07-08 jprocterJAL-976 simpler parameter update model commit | commitdiff | tree | snapshot
2012-07-08 jprocterJAL-961 JAL-976 allow access to service URI for paramet... commit | commitdiff | tree | snapshot
2012-07-08 jprocterJAL-961 JAL-976 recover current settings from associate... commit | commitdiff | tree | snapshot
2012-07-08 jprocterJAL-976 pick an available instance of a service based... commit | commitdiff | tree | snapshot
2012-07-08 jprocterbugfix - use currently held parameters commit | commitdiff | tree | snapshot
2012-07-08 jprocterJAL-976 - storing service parameters on the view model commit | commitdiff | tree | snapshot
2012-07-06 jprocterJAL-976 test if the sliders have been modified from... commit | commitdiff | tree | snapshot
2012-07-06 jprocterunique URI for service type commit | commitdiff | tree | snapshot
2012-07-06 jprocterJAL-961 JAL-976 abstracted container for dynamic calcul... commit | commitdiff | tree | snapshot
2012-07-06 jproctertidy imports commit | commitdiff | tree | snapshot
2012-07-06 jprocterJAL-976 - add support for storing service parameter... commit | commitdiff | tree | snapshot
2012-07-03 jprocterJAL-961 allow calcId to be specified independently... commit | commitdiff | tree | snapshot
2012-07-03 jprocterJAL-974 - broken copy of feature settings commit | commitdiff | tree | snapshot
2012-07-02 jprocterJAL-1129 progress bar - this patch doesn't provide... commit | commitdiff | tree | snapshot
2012-07-02 jprocterJAL-968 incremental - PNG/EPS output has annotation... commit | commitdiff | tree | snapshot
2012-07-02 jproctertidy imports commit | commitdiff | tree | snapshot
2012-07-02 jprocterJAL-974 create graduated feature colours for annotation... commit | commitdiff | tree | snapshot
2012-07-02 jprocterJAL-974 - use refactored methods on AlignmentPanel commit | commitdiff | tree | snapshot
2012-07-02 jprocterJAL-974 - refactor FeatureRenderer constructor to Align... commit | commitdiff | tree | snapshot
2012-07-01 jprocterJAL-1117 alleviate lock starvation commit | commitdiff | tree | snapshot
2012-07-01 jprocterensure all annotation dependent rendering gets refreshed commit | commitdiff | tree | snapshot
2012-06-29 jprocterJAL-1065 JAL-1066 ensure non-residue based schemes... commit | commitdiff | tree | snapshot
2012-06-29 jprocterJAL-1065 JAL-1066 allow different lookup tables for... commit | commitdiff | tree | snapshot
2012-06-26 jprocterJAL-899 added groovy support to develop branch commit | commitdiff | tree | snapshot
2012-06-20 jprocterformatting commit | commitdiff | tree | snapshot
2012-06-19 jprocterJAL-976 JAL-975 JAL-1119 - pass on any existing paramet... commit | commitdiff | tree | snapshot
2012-06-19 jprocterJAL-975 JAL-1119 - prototype adjustable AACons paramete... commit | commitdiff | tree | snapshot
2012-06-19 jprocterJAL-975 - doh! valid result if width matches *ungapped... commit | commitdiff | tree | snapshot
2012-06-19 jprocterJAL-975 - bespoke AACons settings object to save curren... commit | commitdiff | tree | snapshot
2012-06-19 jprocterpatch for JAL-1172 ensure option's default value is... commit | commitdiff | tree | snapshot
2012-06-19 jprocterJAL-961 JAL-975 extend api to support removal of worker... commit | commitdiff | tree | snapshot
2012-06-19 jprocterJAL-975 - ensure we only submit ungapped, padded alignm... commit | commitdiff | tree | snapshot
2012-06-15 jprocterformatting commit | commitdiff | tree | snapshot
2012-06-15 jprocterJAL-1125 option to switch between Jalview and SeqSpace... commit | commitdiff | tree | snapshot
2012-06-15 jprocterfix JAL-1122 commit | commitdiff | tree | snapshot
2012-06-15 jprocterJAL-1123 - make clear where off-by-one error was occuri... commit | commitdiff | tree | snapshot
2012-06-15 jprocterJAL-535 - refactored core PCA viewer code to viewmodel commit | commitdiff | tree | snapshot
2012-06-15 jprocterJAL-535 refactored core code from PCA viewer to viewmodel. commit | commitdiff | tree | snapshot
2012-06-15 jprocterJAL-1120 patch for desktop commit | commitdiff | tree | snapshot
2012-06-15 jprocterpatch for JAL-1121 - reset button and slightly wider... commit | commitdiff | tree | snapshot
2012-06-15 jprocterJAL-535 refactoring todo commit | commitdiff | tree | snapshot
2012-06-15 jprocterExtended IProgressIndicator with method to check if... commit | commitdiff | tree | snapshot
2012-06-15 jprocterMerge branch 'JAL-1013_pca_rna_dna' into develop commit | commitdiff | tree | snapshot
2012-06-14 jprocterJAL-975 JAL-1002 ensure custom parameters are actually... commit | commitdiff | tree | snapshot
2012-06-14 jprocterJAL-1115 - synchronized access to group list commit | commitdiff | tree | snapshot
2012-06-14 jprocterJAL-976 - make sure annotation panel is updated to... commit | commitdiff | tree | snapshot
2012-06-14 jprocterJAL-961 JAL-976 kill any existing AACon job if a new... commit | commitdiff | tree | snapshot
2012-06-14 jprocterJAL-1003 visual delay when running a sequence or alignm... commit | commitdiff | tree | snapshot
2012-06-14 jprocterJAL-961 JAL-976 tweaked way that AACons client is regis... commit | commitdiff | tree | snapshot
2012-06-14 jprocterformatting commit | commitdiff | tree | snapshot
2012-06-14 jprocterformatting commit | commitdiff | tree | snapshot
2012-06-14 jprocterJAL-1118 - hack to try and get rid of flicker. consider... commit | commitdiff | tree | snapshot
2012-06-14 jprocterJAL-1118 WIP - flag to mark if image buffer has just... commit | commitdiff | tree | snapshot
2012-06-14 jprocterJAL-1115 trap exception arising from race condition... commit | commitdiff | tree | snapshot
2012-06-14 jprocterJAL-968 javadoc and return flag indicating if any of... commit | commitdiff | tree | snapshot
2012-06-14 jprocterJAL-961 ensure we only add one instance of a worker... commit | commitdiff | tree | snapshot
2012-06-14 jprocterJAL-961 potentially helpful println statements when... commit | commitdiff | tree | snapshot
2012-06-13 jprocterJAL-1115 refactor base collection for Alignment from... commit | commitdiff | tree | snapshot
2012-06-13 jprocterJAL-1116 - location where vamsas sync failure occurs commit | commitdiff | tree | snapshot
2012-06-13 jprocterjavatidy commit | commitdiff | tree | snapshot
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