jalview.git
2018-04-26 gmungocJAL-2962 rename run method (as not a Runnable)
2018-04-26 gmungocJAL-2962 remove Change Parameters menu from PCA panel
2018-04-26 gmungocJAL-2962 option to offer BLOSUM62 for nucleotide PCA
2018-04-26 gmungocJAL-2962 code tidying/documentation (non-functional...
2018-04-25 gmungocJAL-1767 minor field tidying prior to functional changes
2018-04-24 gmungocJAL-2959 no Print dialog shown if Page Format is Cancelled
2018-04-18 gmungocMerge branch 'releases/Release_2_10_4_Branch' into...
2018-04-18 gmungocJAL-2593 render 'duplicate' features if transparency...
2018-03-22 gmungocJAL-2929 unit test, tidy unused/unneeded fields/parameters
2018-03-21 Jim ProcterJAL-2754 reinstate PA import from bad conflict merge
2018-03-21 Jim ProcterJAL-2754 remove duplicate classpath entry again
2018-03-21 Jim ProcterMerge branch 'releases/Release_2_10_4_Branch' into...
2018-03-21 Jim ProcterMerge branch 'patch/JAL-2754_patch2104forJava8' into...
2018-03-21 Jim ProcterJAL-2754 don’t use deprecated api for getting font...
2018-03-21 Jim ProcterJAL-2754 fix eclipse compilation error about referencin...
2018-03-21 gmungocJAL-2929 use configure Overview gap colour instead...
2018-03-21 Jim ProcterMerge branch 'patch/JAL-2754_patch2104forJava8' into...
2018-03-21 Jim ProcterMerge branch 'patch/JAL-2754_patch2104forJava8' into...
2018-03-21 Jim ProcterJAL-2754 dont put '<>' in <echo> text!
2018-03-21 Jim ProcterMerge branch 'releases/Release_2_10_4_Branch' into...
2018-03-21 Jim ProcterMerge branch 'patch/JAL-2754_patch2104forJava8' into...
2018-03-21 Jim ProcterJAL-2754 clean up proguard path spec and config variables
2018-03-21 gmungocJAL-2754 renamed proguard.jar to include version number
2018-03-21 gmungocJAL-2754 5.3.3 update of proguard.jar
2018-03-21 gmungocJAL-2754 update to specify Java 1.8(+)
2018-03-21 gmungocJAL-2754 update to Java 1.8
2018-03-16 gmungocJAL-2679 getGeneId() now uses the same pattern as getGe...
2018-03-16 gmungocMerge remote-tracking branch 'origin/releases/Release_2...
2018-03-16 gmungocJAL-2922 update FeatureRenderer and repaint feature...
2018-03-16 gmungocMerge branch 'bug/JAL-2865removeGC' into develop
2018-03-15 gmungocJAL-2893 enabling Get Crossreferences to ENSEMBLGENOMES
2018-03-14 gmungocJAL-2893 include ENSEMBLGENOMES as a 'roundtrip db...
2018-03-14 gmungocJAL-2679 reinstating changes lost in VCF merge
2018-03-14 gmungocJAL-2679 reinstating changes lost in VCF merge
2018-03-14 Jim ProcterJAL-2930 JAL-2924 JAL-2913 JAL-2926 JAL-2906 2.10.4...
2018-03-13 gmungocJAL-2913 use FIGURE_FIXEDIDWIDTH (not FIGURE_USERIDWIDTH)
2018-03-08 gmungocMerge remote-tracking branch 'origin/releases/Release_2... merges/JAL-2906_update2_11_from_2_10_4
2018-03-08 gmungocJAL-2885 tests updated for code changes
2018-03-08 gmungocJAL-2930 use MouseWheelEvent.getPreciseWheelRotation...
2018-03-07 Jim ProcterMerge branch 'releases/Release_2_10_4_Branch' into...
2018-03-07 gmungocMerge branch 'bugs/JAL-2922' into releases/Release_2_10...
2018-03-07 gmungocJAL-2922 [2] not [1] for Boolean column of table bugs/JAL-2922
2018-03-07 gmungocMerge branch 'bugs/JAL-2922' into releases/Release_2_10...
2018-03-07 gmungocJAL-2922 i18n and bespoke handler for Invert Selection
2018-03-07 gmungocMerge branch 'bug/JAL-2924nullTooltip' into releases...
2018-03-07 gmungocJAL-2926 fix copy group consensus (and paste sequence...
2018-03-07 gmungocJAL-2925 handle empty annotation when copying group...
2018-03-07 gmungocJAL-2913 use FIGURE_USERIDWIDTH for fixed id width...
2018-02-28 gmungocJAL-2924 no tooltip over null annotation positions bug/JAL-2924nullTooltip
2018-02-28 Jim ProcterMerge branch 'releases/Release_2_10_4_Branch_merged_JAL...
2018-02-27 Jim ProcterJAL-2759 release notes for 2.10.4
2018-02-27 Jim ProcterMerge branch 'feature/JAL-2759' into merge/JAL-2759_2104
2018-02-27 Jim Procterfix for JAL-2922 - update states all at once and then...
2018-02-26 Jim ProcterMerge branch 'feature/JAL-984splitAdjuster' into releas...
2018-02-26 Jim ProcterJAL-984 remove all references to idwidth.gif - in build... feature/JAL-984splitAdjuster
2018-02-23 Jim ProcterJAL-2885 release notes
2018-02-23 Jim ProcterMerge branch 'features/JAL-2885UniprotHttps' into relea...
2018-02-23 Jim ProcterJAL-2885 xfam https features/JAL-2885UniprotHttps
2018-02-23 Jim ProcterJAL-2885 XFAM_DOMAIN->XFAM_BASEURL
2018-02-23 Jim ProcterJAL-2885 Ensembl* -> https
2018-02-23 Jim ProcterJAL-2885 ENSEMBL-DOMAIN -> ENSEMBL-BASEURL
2018-02-23 Jim ProcterJAL-2885 renamed base URL getter from getDomain..
2018-02-22 Jim ProcterMerge branch 'feature/JAL-984splitAdjuster' into releas...
2018-02-22 Jim ProcterJAL-984 ID width adjuster needs to be white !
2018-02-22 Jim ProcterJAL-2666 release notes
2018-02-22 Jim ProcterMerge branch 'bug/JAL-2666' into releases/Release_2_10_...
2018-02-22 Jim ProcterMerge branch 'feature/JAL-984splitAdjuster' into releas...
2018-02-22 Jim ProcterJAL-984 remove all references to idwidth.gif and use...
2018-02-22 Jim ProcterJAL-2906 typo fixes
2018-02-22 Jim ProcterJAL-984 release notes
2018-02-22 Jim ProcterMerge branch 'feature/JAL-984splitAdjuster' into releas...
2018-02-22 Jim ProcterJAL-294 remove unneeded paint() method
2018-02-22 Jim ProcterJAL-984 remove commented/unnecessary if clause
2018-02-21 Jim ProcterJAL-2906 release notes for 2.10.4
2018-02-21 Jim ProcterMerge branch 'bug/JAL-2778again' into releases/Release_...
2018-02-21 Jim ProcterJAL-2778 reinstate transparent windows to avoid ugly... bug/JAL-2778again
2018-02-21 kiramtJAL-2778 Adjust cursor changes in overview panel
2018-02-21 kiramtJAL-2778 Revert back to old synchronisation
2018-02-20 Jim ProcterMerge branch 'releases/Release_2_10_4_Branch' into...
2018-02-20 gmungocJAL-2897 updated unit test for code change features/JAL-1793VCF
2018-02-20 gmungocMerge branch 'develop' into features/JAL-1793VCF
2018-02-20 Jim ProcterMerge branch 'bugs/JAL-2780_JAL-2781_pdbnegativenums...
2018-02-15 Jim ProcterMerge branch 'develop' into releases/Release_2_10_4_Branch
2018-02-15 Jim ProcterJAL-2906 bump release version and cut new release note...
2018-02-13 Jim ProcterJAL-2780 scan all test IDs before testing and reporting... bugs/JAL-2780_JAL-2781_pdbnegativenums
2018-02-13 Jim ProcterJAL-2780 SequenceI.findFeatures takes column numbers...
2018-02-13 Jim ProcterJAL-2780 JAL-2781 don’t create a mapping if sequence...
2018-02-13 Jim ProcterJAL-2780 JAL-2781 only create a mapping entry or write...
2018-02-13 Jim ProcterJAL-2781 JAL-2780 include sequence start number when...
2018-02-13 Jim ProcterJAL-2781 ensure Trim is disabled before test starts
2018-02-13 Jim ProcterJAL-2781 refactor ‘trim retrieved sequence’ preference...
2018-02-13 Jim ProcterJAL-2781 null local siftsClient variable if exception...
2018-02-13 Jim ProcterJAL-2781 refactor StructureSelectionManager.siftsClient...
2018-02-13 Jim ProcterJAL-2781 FIXME: value of sourceType parameter always...
2018-02-13 Jim ProcterJAL-2781 refactor possibly non-functional ‘extract...
2018-02-13 Jim ProcterJAL-2781 tidy up comments on getMapping/computeMapping
2018-02-13 Jim ProcterJAL-2781 report exactly which residues do not receive...
2018-02-13 Jim ProcterJAL-2905 added additional jvmarg for testng task condit...
2018-02-12 Jim ProcterJAL-2780 JAL-2781 extra column in mapping array
2018-02-12 Jim ProcterJAL-2904 JAL-2780 JAL-2781 update JmolCommandsTest...
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