jalview.git
2018-10-17 Jim ProcterJAL-3047 - create the clover output dir in the working...
2018-10-17 Jim ProcterMerge branch 'feature/JAL-3063JAXB' into Jalview-BH...
2018-09-28 gmungocJAL-3063 service param files read/saved using JAXB...
2018-09-28 gmungocJAL-3063 top level element added to JalviewWsParamSet.xsd
2018-09-28 gmungocJAL-3063 comments re use of xjc to generate Java bindin...
2018-09-24 gmungocJAL-3063 tidy commented out code
2018-09-21 gmungocJAL-3063 wrappers with check for null getting optional...
2018-09-19 gmungocJAL-3063 use JAXB for 'Save as Project' and load projec...
2018-09-19 gmungocJAL-3063 unit test for save/load project switched to...
2018-09-18 gmungocJAL-3063 Save/Load user defined colours using JAXB
2018-09-18 gmungocJAL-3063 Save/Load user colour scheme using JAXB
2018-09-18 gmungocJAL-3063 top level element added to colours schema...
2018-09-18 gmungocJAL-3063 New View via JAXB
2018-09-18 gmungocJAL-3063 temporary extra menu option to save/load proje...
2018-09-18 gmungocJAL-3063 first version of Jalview2XML using JAXB to...
2018-09-18 gmungocJAL-3063 JAXB binding classes generated by xjc from...
2018-09-18 gmungocJAL-3063 tweak schema so JAXB tool xjc recognises XML...
2018-09-18 gmungocJAL-3063 tweak schema so JAXB generates enums for enume...
2018-09-18 hansonrJmol/SwingJS update. Includes new transpiler and runtime
2018-09-17 gmungocJAL-3116 test method renamed to match code
2018-09-17 gmungocJAL-3116 unit tests adapted to EMBL over JAXB
2018-09-14 gmungocJAL-3116 parse EMBL XML with JAXB (todo: update unit...
2018-09-13 gmungocJAL-3116 Uniprot XML unmarshalled using JAXB not Castor
2018-09-12 gmungocMerge branch 'develop' of https://source.jalview.org...
2018-09-12 Jim ProcterMerge branch 'merge/JAL-3091_JAL-3111_develop_211'...
2018-09-12 gmungocMerge branch 'develop' of https://source.jalview.org...
2018-09-12 gmungocJAL-1551 reinstated Save actions
2018-09-11 gmungocJAL-3113 override minimum frame size in a way that...
2018-09-11 Jim ProcterJAL-3112 increased TEST_TIMEOUT to 9000ms - needed...
2018-09-11 Jim ProcterJAL-3112 Use classgraph to reconstruct the classpath...
2018-09-11 gmungocJAL-3048 recoded edit View Name dialog for JalviewJS
2018-09-11 Jim ProcterMerge branch 'merge/JAL-3091_JAL-3111_develop_211'...
2018-09-11 Jim ProcterJAL-3111 drop hts-1.33 as a dependency (in favour of...
2018-09-11 Jim ProcterMerge branch 'merge/JAL-3091_JAL-3111_develop_211'...
2018-09-11 gmungocJAL-3056 offer New / Expand / Gather View in JalviewJS
2018-09-11 Jim ProcterMerge branch 'releases/Release_2_11_Branch' into merge...
2018-09-11 Jim ProcterMerge branch 'develop' into releases/Release_2_11_Branch
2018-09-09 Jim ProcterJAL-3091 changed release date to 10th September - tweak... releases/Release_2_10_5_Branch Release_2_10_5
2018-09-09 Jim ProcterJAL-3106 normalise extension before checking if it...
2018-09-07 Jim ProcterJAL-3107 update any group associated annotation rows...
2018-09-07 Jim ProcterJAL-2988 JAL-2968 renamed patched VAqua5 to VAqua5...
2018-09-07 Jim ProcterJAL-2988 if selected file is null (On Java 10/OSX ...
2018-09-07 Jim ProcterJAL-2988 workaround: overload getSelectedFile() because...
2018-09-07 Jim ProcterJAL-3106 use .jvp as default
2018-09-07 Jim ProcterJAL-3105 fix for focus transfer after window closed...
2018-09-06 Jim ProcterJAL-3091 code committed in error (failed patch for...
2018-09-06 Jim ProcterJAL-3091 release notes for JAL-3104
2018-09-06 Jim ProcterJAL-3105 reallocate quality and consensus annotation...
2018-09-06 Jim ProcterJAL-2854 compute visible annotation panel height and...
2018-09-05 Jim ProcterJAL-3065 don’t quote class path args for Runtime.exec...
2018-09-05 Jim ProcterJAL-3091 update whats new!
2018-09-05 Jim ProcterJAL-3091 update Java 10 known issues/workarounds in...
2018-09-05 Jim ProcterJAL-3091 known defect in whats new for Java 10 issues...
2018-09-05 Jim ProcterJAL-3091 add Ben Soares to authors list and switch...
2018-09-05 Jim ProcterJAL-3091 release notes for updated memory settings
2018-09-05 Jim ProcterJAL-3091 release notes
2018-09-05 Jim ProcterJAL-3101 increase default heap size in IA and JNLP...
2018-09-05 Jim ProcterMerge branch 'patch/VAqua_saveload_update_JAL-2988...
2018-09-05 Jim ProcterJAL-2988 update InstallAnywhere install dependencies... patch/VAqua_saveload_update_JAL-2988
2018-09-05 Jim ProcterMerge branch 'bug/JAL-3076ensemblGeneId' into develop
2018-09-05 Jim ProcterJAL-3091 release date set for Thursday 6th September
2018-09-05 Jim ProcterMerge branch 'bug/JAL-3065_DH_keyPair_Exception_nogroov...
2018-09-05 Jim ProcterJAL-3065 - amended commit 4906697ab6e5a79fbce3baae89f7... bug/JAL-3065_DH_keyPair_Exception_nogroovysettings
2018-09-04 Jim ProcterJAL-3091 JAL-2988 release notes re Java 10 and OSX
2018-09-03 Jim ProcterMerge branch 'patch/VAqua_saveload_update_JAL-2988...
2018-09-03 Jim ProcterMerge branch 'releases/Release_2_10_5_Branch' of source...
2018-09-03 Jim ProcterJAL-3091 -Dnosign to disable jar signing phase of build
2018-09-03 Jim ProcterJAL-3091 -Dnosign to disable jar signing phase of build
2018-09-03 Jim ProcterJAL-3091 release notes and whats new !
2018-09-03 gmungocMerge branch 'trialMerge' into releases/Release_2_10_5_...
2018-09-03 gmungocJAL-3076 fetch Ensembl sequence as JSON instead of...
2018-09-03 gmungocJAL-3079 drop use of clip region while drawing wrapped...
2018-09-03 Jim ProcterJAL-3065 release notes
2018-09-03 Jim ProcterMerge branch 'bug/JAL-3065_DH_keyPair_Exception' into...
2018-09-03 Jim ProcterJAL-3076 clarify javadoc handling single sequence respo... bug/JAL-3076ensemblGeneId
2018-09-03 Jim ProcterJAL-3087 release notes
2018-08-31 Jim ProcterJAL-3095 account for sequence start when highlighting...
2018-08-31 Jim ProcterJAL-3053 JAL-3061 JAL-3095 release notes
2018-08-31 Jim ProcterMerge branch 'bug/JAL-3061_RNA_secondary_structure_anno...
2018-08-31 Jim ProcterMerge branch 'releases/Release_2_10_5_Branch' of source...
2018-08-31 Jim ProcterJAL-3095 release notes
2018-08-31 Jim Procterjava doc and fix for JAL-3095 - region of trimmed RNA...
2018-08-31 gmungocJAL-3003 remove redundant call to drawSelectionGroup
2018-08-31 gmungocMerge branch 'bug/JAL-3003epsWithSelection' into trialMerge
2018-08-30 Jim ProcterJAL-3092 release notes
2018-08-30 Jim ProcterJAL-3092 make sure base pair counter is always moved...
2018-08-30 gmungocMerge branch 'bug/JAL-247pngShowHiddenSeqMarks' into...
2018-08-30 gmungocJAL-3055 refinements to alternatives to deriveFont
2018-08-30 gmungocJAL-3079 don't create new Graphics to draw as it confus...
2018-08-29 Jim ProcterJAL-3091 release notes for JAL-3003 JAL-3059
2018-08-28 Jim ProcterJAL-3003 different coloured borders in demo annotation...
2018-08-28 gmungocJAL-3059 use correct border colour for groups
2018-08-28 gmungocJAL-3003 draw selection group outline on main graphics...
2018-08-28 gmungocJAL-3055 corrected logo drawing in JS
2018-08-28 Jim ProcterJAL-247 release notes
2018-08-28 gmungocJAL-247 comment to clarify wrapped print algorithm
2018-08-28 gmungocJAL-247 print/export wrapped uses common code to draw...
2018-08-28 gmungocJAL-3087 include full alignment height in repeating...
2018-08-28 gmungocJAL-247 draw/print sequence ids now uses common code...
2018-08-28 Jim ProcterJAL-3091 release 2.10.5 added to release notes
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