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jalview.git
2011-09-29 janengelhardtMerge branch '2_5_1_rna_merge' of https://source.jalvie... 2_5_1_rna_merge commit | commitdiff | tree | snapshot
2011-09-29 janengelhardtSequence name in VARNA windows was not correct (always... commit | commitdiff | tree | snapshot
2011-09-05 jprocterremoved old VARNA library commit | commitdiff | tree | snapshot
2011-08-28 janengelhardtIncluding of VARNAv-3.9; commit | commitdiff | tree | snapshot
2011-08-21 janengelhardtJAL-913; Extending documentation; VARNA help; commit | commitdiff | tree | snapshot
2011-08-19 janengelhardtJAL-913; Documentation of RNA Structure Conservation commit | commitdiff | tree | snapshot
2011-08-16 janengelhardtJAL-842; Text element containing the structure is not... commit | commitdiff | tree | snapshot
2011-08-15 janengelhardtJAL-891; Tooltips for Structure logos implemented; commit | commitdiff | tree | snapshot
2011-08-15 janengelhardtJAL-878; Structures associated to a sequence are availa... commit | commitdiff | tree | snapshot
2011-08-15 janengelhardtJAL-891; Labeling of structure conservation is improved... commit | commitdiff | tree | snapshot
2011-08-15 janengelhardtJAL-891; Sorting of Structure logo implemented; bug... commit | commitdiff | tree | snapshot
2011-08-11 jprocteravoid NPE for null annotation element columns JAL-896 commit | commitdiff | tree | snapshot
2011-08-11 janengelhardtJAL-885; hasRNAStructure method was introduced to Align... commit | commitdiff | tree | snapshot
2011-08-10 janengelhardtJAL-885; Structure conservation row is just added if... commit | commitdiff | tree | snapshot
2011-08-09 janengelhardtJAL-891; base-pair logos can now be activated for structure commit | commitdiff | tree | snapshot
2011-08-08 janengelhardtJAL-891; structure logo is adapted to two char's; Missi... commit | commitdiff | tree | snapshot
2011-08-08 janengelhardtJAL-891; sequence logos are available on structure... commit | commitdiff | tree | snapshot
2011-08-04 jprocterJAL-896 - patch to ensure arrows in different direction... commit | commitdiff | tree | snapshot
2011-08-04 jprocterJAL-883 - refactored and debugged arrow, stem and helix... commit | commitdiff | tree | snapshot
2011-08-03 janengelhardtJAL-885; Multi-helix bug is solved; One should think... commit | commitdiff | tree | snapshot
2011-07-31 janengelhardtJAL-885; StructureConservation row is displayed at... commit | commitdiff | tree | snapshot
2011-07-29 janengelhardtJAL-885; Implementation of StructureFrequency.java... commit | commitdiff | tree | snapshot
2011-07-25 janengelhardtsome print statements to test things commit | commitdiff | tree | snapshot
2011-07-25 janengelhardtJAL-882; VARNA crashed when non-standard gaps where... commit | commitdiff | tree | snapshot
2011-07-25 janengelhardtJAL-878; Additional structures with a 'GR' tag in Stock... commit | commitdiff | tree | snapshot
2011-07-25 janengelhardtJAL-842; toy example to insert nucleotides in sequences... commit | commitdiff | tree | snapshot
2011-07-25 janengelhardtJAL-842; Implement transmitting of Jalview Sequence... commit | commitdiff | tree | snapshot
2011-07-25 janengelhardtJAL-842: some bugfixes; commit | commitdiff | tree | snapshot
2011-07-25 janengelhardtJAL-842; Added the TextField to edit structure in VARNA commit | commitdiff | tree | snapshot
2011-07-25 janengelhardtJAL-842; trimming single structures for single sequence... commit | commitdiff | tree | snapshot
2011-07-25 janengelhardtJAL-842; Give Varna frames name for window organizer... commit | commitdiff | tree | snapshot
2011-07-25 janengelhardtVarna external frame bug solved commit | commitdiff | tree | snapshot
2011-07-25 janengelhardtReorganize the class structure, unfortunately breaks... commit | commitdiff | tree | snapshot
2011-07-25 janengelhardtclean code commit | commitdiff | tree | snapshot
2011-07-25 janengelhardtFurther structure accessing feature commit | commitdiff | tree | snapshot
2011-07-25 janengelhardtChanged location of VARNAv3-8b.jar; small changes commit | commitdiff | tree | snapshot
2011-07-25 janengelhardtjal-842; sequence transmitting to Varna included commit | commitdiff | tree | snapshot
2011-07-25 janengelhardtJAL-842, AppVarnaBinding was filled with a minimalistic... commit | commitdiff | tree | snapshot
2011-07-25 janengelhardtJAL-842, Further creation of VARNA classes (probably... commit | commitdiff | tree | snapshot
2011-07-25 janengelhardtContainer for VARNA classes are created according to... commit | commitdiff | tree | snapshot
2011-07-25 janengelhardtJAL-841; Structure trigger token in jalview.io.Alignmen... commit | commitdiff | tree | snapshot
2011-07-25 janengelhardt'Add doc for JalviewRNASupport what was done/todo'... commit | commitdiff | tree | snapshot
2011-07-25 janengelhardt'Help files updated with RNA stuff' merge; JAL-580 commit | commitdiff | tree | snapshot
2011-07-25 janengelhardt'Fix Group Colour bug' merge; JAL-580 commit | commitdiff | tree | snapshot
2011-07-25 janengelhardt'Update to Covariaton color scheme' merge; JAL-580 commit | commitdiff | tree | snapshot
2011-07-25 janengelhardt'Add Rfam database sequence retrieval' merged; JAL-580 commit | commitdiff | tree | snapshot
2011-07-25 janengelhardtStart merging of Laurens Code commit | commitdiff | tree | snapshot
2011-07-25 janengelhardtNew branch created and author list changed to test... commit | commitdiff | tree | snapshot
2011-07-22 jproctertodo for JAL-860 - associate multiple sequences with... commit | commitdiff | tree | snapshot
2011-07-22 jprocterapplet min/max annotation shading parameter documentati... commit | commitdiff | tree | snapshot
2011-07-22 jprocterensure propagation of colour change on annotation updat... commit | commitdiff | tree | snapshot
2011-07-22 jprocterfix NPE when annotation colourgradient is applied commit | commitdiff | tree | snapshot
2011-07-22 jproctercode style commit | commitdiff | tree | snapshot
2011-07-22 jprocterdefault parameter for colours in annotation shading... commit | commitdiff | tree | snapshot
2011-07-22 jproctermethod to get a user default colour (JAL-234) commit | commitdiff | tree | snapshot
2011-07-21 jprocterretrieve all sequences matching a particular name ... commit | commitdiff | tree | snapshot
2011-07-21 jprocterlocal instance of deployJava script from Sun/Oracle commit | commitdiff | tree | snapshot
2011-07-21 jprocterrefined applet example on examples page commit | commitdiff | tree | snapshot
2011-07-21 jprocterbetter layout and structure display on startup commit | commitdiff | tree | snapshot
2011-07-21 jprocterensure contents of hash is extended JAL-876 commit | commitdiff | tree | snapshot
2011-07-18 jprocterfixed mouseover problem - still need to deal with flick... commit | commitdiff | tree | snapshot
2011-07-10 jprocterprogress when saving state (JAL-870) and hack to trap... commit | commitdiff | tree | snapshot
2011-07-09 jprocterdocumentation for menu item JAL-860 commit | commitdiff | tree | snapshot
2011-07-09 jproctermenu item and constructor to open a bunch of structures... commit | commitdiff | tree | snapshot
2011-07-09 jprocterrefactored from PopupMenu (for JAL-860) commit | commitdiff | tree | snapshot
2011-07-09 jproctertodo re JAL-732 commit | commitdiff | tree | snapshot
2011-07-09 jprocterJAL-868 todo commit | commitdiff | tree | snapshot
2011-07-08 jprocteropen each query result from an alignment datasource... commit | commitdiff | tree | snapshot
2011-07-07 jproctercomment re JAL-153 commit | commitdiff | tree | snapshot
2011-07-07 jprocterSet job title correctly and pass reason why commit | commitdiff | tree | snapshot
2011-07-07 jprocterextract sequence from DNA bases like 'DG' (JAL-866) commit | commitdiff | tree | snapshot
2011-07-06 jprocterensure selseq is trimmed to just sequences included... commit | commitdiff | tree | snapshot
2011-07-05 jprocterRevert "partial patch for JAL-411 - text rendered above... commit | commitdiff | tree | snapshot
2011-07-05 jprocterpartial patch for JAL-411 - text rendered above features commit | commitdiff | tree | snapshot
2011-07-05 jprocterensure javascript and jmol example directories are... commit | commitdiff | tree | snapshot
2011-07-05 jprocterMerge branch 'master' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2011-07-05 jprocterRevert "Revert "needed for linkedapplets_ng.html (JAL... commit | commitdiff | tree | snapshot
2011-07-05 jprocterRevert "needed for linkedapplets_ng.html (JAL-859,JAL... commit | commitdiff | tree | snapshot
2011-07-05 jprocterneeded for linkedapplets_ng.html (JAL-859,JAL-469) commit | commitdiff | tree | snapshot
2011-07-05 jprocterwhole frame should be validated. commit | commitdiff | tree | snapshot
2011-07-05 jprocterignore any events after manager has already been finalized. commit | commitdiff | tree | snapshot
2011-07-05 jprocterrefactor to send list of model filenames involved in... commit | commitdiff | tree | snapshot
2011-07-05 jprocter(JAL-856,JAL-621) commit | commitdiff | tree | snapshot
2011-07-05 jprocternew and restructured javascript examples and documentat... commit | commitdiff | tree | snapshot
2011-07-04 jprocterjmb isn't created yet, so use another SSM provider commit | commitdiff | tree | snapshot
2011-07-03 jprocterTODO re JAL-433 - filter events if alignFrame is specif... commit | commitdiff | tree | snapshot
2011-07-03 jprocterdocumentation (JAL-859, JAL-816, JAL-621) commit | commitdiff | tree | snapshot
2011-07-03 jprocterextracted jalviewlite API calls as separate interface... commit | commitdiff | tree | snapshot
2011-07-03 jproctergroovy scripting examples (JAL-???) commit | commitdiff | tree | snapshot
2011-07-03 jprocterjavadoc built under dist directory for all Jalview... commit | commitdiff | tree | snapshot
2011-06-30 jprocterset initial annotation panel height appropriately ... commit | commitdiff | tree | snapshot
2011-06-29 jprocterstandard embedded jalviewLite example (JAL-815) commit | commitdiff | tree | snapshot
2011-06-29 jprocterdocumentation and targets for building a working applet... commit | commitdiff | tree | snapshot
2011-06-29 jprocterrepaint image buffer height change (JAL-564) and ensure... commit | commitdiff | tree | snapshot
2011-06-29 jprocterrepaint image buffer resize when panel height changes... commit | commitdiff | tree | snapshot
2011-06-29 jprocterpreliminary patch to reduce problem observed in JAL-546 commit | commitdiff | tree | snapshot
2011-06-29 jprocterensure annotation height adjuster doesn't disappear... commit | commitdiff | tree | snapshot
2011-06-28 jprocterfixes JAL-849 - double check after waiting a bit that... commit | commitdiff | tree | snapshot
2011-06-26 jprocterreinstated valid XML content : additional for JAL-775 commit | commitdiff | tree | snapshot
2011-06-26 jprocterbasic Netbeans project files and enriched build documen... commit | commitdiff | tree | snapshot
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