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jalview.git
2018-02-05 Jim ProcterJAL-2780 JAL-2781 (failing) test comparing location... commit | commitdiff | tree | snapshot
2018-02-05 Jim ProcterJAL-2780 JAL-2781 programmatically select structures... commit | commitdiff | tree | snapshot
2018-02-05 Jim ProcterJAL-2780 JAL-2871 only look up current table view once commit | commitdiff | tree | snapshot
2018-02-05 Jim ProcterJAL-2780 JAL-2781 test AlignmentI.findAnnotations locat... commit | commitdiff | tree | snapshot
2018-02-05 Jim ProcterJAL-2780 JAL-2781 - patch and first test for AlignmentI... commit | commitdiff | tree | snapshot
2018-02-05 kiramtJAL-2759 Fix errant RangeElementsIterator (unit tests... commit | commitdiff | tree | snapshot
2018-02-05 kiramtJAL-2759 Rename getBoundedStartIterator commit | commitdiff | tree | snapshot
2018-02-05 kiramtJAL-2759 Changes to StartRegionIterator after review commit | commitdiff | tree | snapshot
2018-02-05 kiramtJAL-2788 possible adjustments to sequence accesses commit | commitdiff | tree | snapshot
2018-02-05 gmungocJAL-2897 more informative description on synonymous... commit | commitdiff | tree | snapshot
2018-02-05 gmungocJAL-2897 more informative description on synonymous... commit | commitdiff | tree | snapshot
2018-02-05 gmungocMerge branch 'spikes/mungo' into trialMerge commit | commitdiff | tree | snapshot
2018-02-05 kiramtJAL-2778 Sequence width benchmark commit | commitdiff | tree | snapshot
2018-02-05 gmungocJAL-2897 more informative description on synonymous... commit | commitdiff | tree | snapshot
2018-02-02 gmungocJAL-984 merged to spikes-mungo commit | commitdiff | tree | snapshot
2018-02-02 gmungocMerge branch 'feature/JAL-984splitAdjuster' into featur... commit | commitdiff | tree | snapshot
2018-02-02 gmungocJAL-984 use cursor for drag regions to adjust annotatio... commit | commitdiff | tree | snapshot
2018-02-02 gmungocJAL-984 better behaved panel height adjuster commit | commitdiff | tree | snapshot
2018-02-01 kiramtJAL-2759 Added in JAL-2851 fix commit | commitdiff | tree | snapshot
2018-02-01 kiramtJAL-2759 use right iterator for getVisibleColsIterator commit | commitdiff | tree | snapshot
2018-01-31 kiramtJAL-2759 Rationalise VisibleColsIterator and HiddenCols... commit | commitdiff | tree | snapshot
2018-01-31 kiramtJAL-2759 Generalised HiddenColsIterator naming commit | commitdiff | tree | snapshot
2018-01-31 gmungocJAL-2792 added tooltip to menu items in case of truncation commit | commitdiff | tree | snapshot
2018-01-31 kiramtJAL-2759 test renaming commit | commitdiff | tree | snapshot
2018-01-31 kiramtJAL-2759 minor refactor to hiding bitsets commit | commitdiff | tree | snapshot
2018-01-30 gmungocJAL-2069 menu item now "Variable colour..." to hint... commit | commitdiff | tree | snapshot
2018-01-30 gmungocJAL-1793 update spike build to latest incl stop and... commit | commitdiff | tree | snapshot
2018-01-30 gmungocJAL-2898 show 'stop_gained' variants on peptide sequences commit | commitdiff | tree | snapshot
2018-01-30 kiramtJAL-2759 Add missing hiddenColumns empty check commit | commitdiff | tree | snapshot
2018-01-30 kiramtJAL-2759 updateForDeletedRegion no longer needed commit | commitdiff | tree | snapshot
2018-01-30 gmungocJAL-2897 generate peptide variants for synonymous codon... commit | commitdiff | tree | snapshot
2018-01-30 gmungocJAL-2897 formatting change only prior to functional... commit | commitdiff | tree | snapshot
2018-01-30 kiramtJAL-2759 Rationalising hidden cols cursor, and sorting... commit | commitdiff | tree | snapshot
2018-01-30 kiramtJAL-2759 comment commit | commitdiff | tree | snapshot
2018-01-30 kiramtJAL-2759 Additional tests and tweaks to numColumns... commit | commitdiff | tree | snapshot
2018-01-30 kiramtJAL-2759 Keep numColumns up to date commit | commitdiff | tree | snapshot
2018-01-29 kiramtJAL-2759 remove unneeded cast commit | commitdiff | tree | snapshot
2018-01-29 kiramtMerge branch 'feature/JAL-2759' of https://source.jalvi... commit | commitdiff | tree | snapshot
2018-01-29 kiramtJAL-2759 Combine findRegionForColumn code in HiddenColu... commit | commitdiff | tree | snapshot
2018-01-29 gmungocMerge branch 'feature/JAL-2759' of https://source.jalvi... commit | commitdiff | tree | snapshot
2018-01-29 gmungocJAL-1270 testPadGaps() added commit | commitdiff | tree | snapshot
2018-01-29 kiramtJAL-2759 numColumns reset commit | commitdiff | tree | snapshot
2018-01-29 kiramtJAL-2759 remove redundant hiddenColumns.clear() commit | commitdiff | tree | snapshot
2018-01-29 kiramtJAL-2759 Tidy commit | commitdiff | tree | snapshot
2018-01-29 kiramtJAL-2759 make a new cursor instead of resetting, update... commit | commitdiff | tree | snapshot
2018-01-29 kiramtJAL-2759 Fix unintended type change commit | commitdiff | tree | snapshot
2018-01-29 gmungocJAL-2743 recoded EnsemblLookup without lambda expressio... commit | commitdiff | tree | snapshot
2018-01-26 Jim ProcterMerge branch 'releases/Release_2_10_3_Branch' into... commit | commitdiff | tree | snapshot
2018-01-26 kiramtJAL-2778 try another way to draw sequences with reduced... commit | commitdiff | tree | snapshot
2018-01-26 gmungocMerge branch 'develop' into features/JAL-1793VCF commit | commitdiff | tree | snapshot
2018-01-26 kiramtJAL-2778 tightened up use of resetAlignmentDims commit | commitdiff | tree | snapshot
2018-01-25 kiramtJAL-2778 Tidy commit | commitdiff | tree | snapshot
2018-01-25 kiramtJAL-2778 added JAL-2851 fix to avoid confusion commit | commitdiff | tree | snapshot
2018-01-25 kiramtJAL-2778 Reinstate id width adjuster commit | commitdiff | tree | snapshot
2018-01-24 Jim ProcterMerge branch 'develop' into releases/Release_2_10_3_Branch releases/Release_2_10_3_Branch Release_2_10_3b1 commit | commitdiff | tree | snapshot
2018-01-24 Jim ProcterJAL-2858 update release date and rejig what's new message commit | commitdiff | tree | snapshot
2018-01-23 Jim ProcterMerge branch 'develop' into releases/Release_2_10_3_Branch commit | commitdiff | tree | snapshot
2018-01-23 Jim ProcterJAL-2858 fix what's new commit | commitdiff | tree | snapshot
2018-01-23 Jim ProcterMerge branch 'develop' into releases/Release_2_10_3_Branch commit | commitdiff | tree | snapshot
2018-01-23 Jim ProcterJAL-2858 update latest release notes link in TOC commit | commitdiff | tree | snapshot
2018-01-23 Jim ProcterJAL-2859 release notes commit | commitdiff | tree | snapshot
2018-01-23 Jim ProcterJAL-2858 update release notes commit | commitdiff | tree | snapshot
2018-01-22 Jim ProcterMerge branch 'develop' into releases/Release_2_10_3_Branch commit | commitdiff | tree | snapshot
2018-01-22 Jim ProcterJAL-2858 release notes for 2.10.3b1 (including revision... commit | commitdiff | tree | snapshot
2018-01-22 Jim ProcterJAL-2858 bump version number for 2.10.3b1 commit | commitdiff | tree | snapshot
2018-01-22 kiramtJAL-2579 Moved locateVisibleStartOfSequence to Sequence... commit | commitdiff | tree | snapshot
2018-01-22 kiramtJAL-2759 Various minor HiddenColumns updates after... commit | commitdiff | tree | snapshot
2018-01-19 kiramtJAL-2759 Changes to getVisibleSequenceStrings after... commit | commitdiff | tree | snapshot
2018-01-19 kiramtJAL-2759 Moved propagateInsertions out of HiddenColumns commit | commitdiff | tree | snapshot
2018-01-19 kiramtJAL-2759 Update to getVisibleStartAndEndIndex after... commit | commitdiff | tree | snapshot
2018-01-18 kiramtJAL-2759 change subtractVisibleColumns and removal... commit | commitdiff | tree | snapshot
2018-01-18 gmungocJAL-2810 JAL-2886 i18n commit | commitdiff | tree | snapshot
2018-01-18 gmungocJAL-2679 update query id to actual case of retrieved... commit | commitdiff | tree | snapshot
2018-01-18 kiramtJAL-2759 Updated test commit | commitdiff | tree | snapshot
2018-01-18 kiramtJAL-2759 unit tests (incomplete) commit | commitdiff | tree | snapshot
2018-01-17 gmungocJAL-2679 case-insensitive comparison of query and retri... commit | commitdiff | tree | snapshot
2018-01-16 gmungocJAL-2679 use object_type=Transcript for lookup of Paren... commit | commitdiff | tree | snapshot
2018-01-16 kiramtJAL-2759 setup hideBitSet over range for hideInsertions commit | commitdiff | tree | snapshot
2018-01-16 gmungocJAL-2885 uniprot now https, uniprot/ensembl/pfam/xfam... commit | commitdiff | tree | snapshot
2018-01-16 gmungocJAL-1270 JAL-2885 clear properties before load commit | commitdiff | tree | snapshot
2018-01-16 kiramtJAL-2759 Unit test for PopupMenu hideInsertions code commit | commitdiff | tree | snapshot
2018-01-16 kiramtJAL-2759 Moved alignment annotation code out of HiddenC... commit | commitdiff | tree | snapshot
2018-01-16 kiramtJAL-2759 Replaced StringBuffer with StringBuilder;... commit | commitdiff | tree | snapshot
2018-01-15 kiramtJAL-2759 More compact iterator usage; after review commit | commitdiff | tree | snapshot
2018-01-15 kiramtJAL-2759 First pass instantiate hiddenColumns collectio... commit | commitdiff | tree | snapshot
2018-01-15 kiramtJAL-2759 getVisContigsIterator returns VisibleContigsIt... commit | commitdiff | tree | snapshot
2018-01-15 kiramtJAL-2759 Rename hideInsertionsFor to hideList, after... commit | commitdiff | tree | snapshot
2018-01-15 kiramtJAL-2759 Refactor of hideInsertionsFor after review commit | commitdiff | tree | snapshot
2018-01-15 kiramtJAL-2759 Simplified HiddenColumns constructor after... commit | commitdiff | tree | snapshot
2018-01-15 kiramtJAL-2759 Changed VisibleColsCollection constructor... commit | commitdiff | tree | snapshot
2018-01-15 kiramtJAL-2759 Minor doc and naming changes commit | commitdiff | tree | snapshot
2018-01-15 kiramtJAL-2759 Updated absoluteToVisibleColumn doc (prev... commit | commitdiff | tree | snapshot
2018-01-15 kiramtJAL-2759 Rename findColumnPosition and adjustForHiddenC... commit | commitdiff | tree | snapshot
2018-01-15 kiramtJAL-2759 Renamed BoundedHiddenColsIterator to HiddenCol... commit | commitdiff | tree | snapshot
2018-01-15 kiramtJAL-2759 Comments and renaming for has(Many)HiddenColum... commit | commitdiff | tree | snapshot
2018-01-15 kiramtJAL-2759 Tidy up javadoc and naming in HiddenColumnsCur... commit | commitdiff | tree | snapshot
2018-01-15 kiramtJAL-2759 Updated HiddenColumnsTest::testIsVisible follo... commit | commitdiff | tree | snapshot
2018-01-15 kiramtJAL-2759 Update to getHiddenBoundaryRight + unit test... commit | commitdiff | tree | snapshot
2018-01-15 kiramtJAL-2759 Updates following review commit | commitdiff | tree | snapshot
2018-01-12 kiramtJAL-2886 trivial unit test fix commit | commitdiff | tree | snapshot
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