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jalview.git
2020-06-16 Jim ProcterJAL-3660 JAL-3561 output alignment as requested file... bug/JAL-3561_translatefileformats commit | commitdiff | tree | snapshot
2020-06-16 Jim ProcterJAL-3561 JAL-3660 check resolved FileFormatI instances... commit | commitdiff | tree | snapshot
2020-03-20 Jim ProcterJAL-3561 failing test verifying expected fileformat... commit | commitdiff | tree | snapshot
2020-03-19 gmungocMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2020-03-19 Ben SoaresJAL-3541 increase maxheapsize for test worker process commit | commitdiff | tree | snapshot
2020-03-19 Ben SoaresJAL-3541 tidying build.gradle, delete cloverInstrDir... commit | commitdiff | tree | snapshot
2020-03-19 gmungocJAL-3305 don't propagate an empty SelectionGroup to... commit | commitdiff | tree | snapshot
2020-03-19 Ben SoaresJAL-3541 put org.gradle.jvmargs explicitly into gradle... commit | commitdiff | tree | snapshot
2020-03-18 Ben SoaresJAL-3541 merged cleanClover with develop commit | commitdiff | tree | snapshot
2020-03-18 Ben SoaresJAL-3541 perhaps a better clean for clover. fixed commit | commitdiff | tree | snapshot
2020-03-18 Ben SoaresJAL-3541 perhaps a better clean for clover commit | commitdiff | tree | snapshot
2020-03-17 Ben SoaresJAL-3541 rejigged clover tasks very mildly commit | commitdiff | tree | snapshot
2020-03-17 Ben SoaresRevert "JAL-3541 trying out previous cloverReport task" commit | commitdiff | tree | snapshot
2020-03-17 Ben SoaresJAL-3541 trying out previous cloverReport task commit | commitdiff | tree | snapshot
2020-03-16 Jim ProcterJAL-3407 JAL-3187 help documentation for virtual featur... commit | commitdiff | tree | snapshot
2020-03-16 Jim ProcterJAL-3407 JAL-3549 explicitly mention the ‘no features... commit | commitdiff | tree | snapshot
2020-03-16 Jim ProcterJAL-3407 group together ‘virtual feature’ related featu... commit | commitdiff | tree | snapshot
2020-03-16 Jim ProcterMerge branch 'develop' of source.jalview.org/git/jalvie... commit | commitdiff | tree | snapshot
2020-03-12 Ben SoaresJAL-3394 updated version if install4j gradle plugin commit | commitdiff | tree | snapshot
2020-03-09 gmungocJAL-3528 unit tests added for failed lookup, Javadoc commit | commitdiff | tree | snapshot
2020-03-09 gmungocJAL-3407 3549 in release notes commit | commitdiff | tree | snapshot
2020-03-09 gmungocJAL-3549 JAL-3305 no Sort By Score / Density if no... commit | commitdiff | tree | snapshot
2020-03-09 gmungocJAL-3412 update layout whenever desired id width changes testbuild/JAL-3412_getIdWidth_test commit | commitdiff | tree | snapshot
2020-03-06 gmungocMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2020-03-06 gmungocJAL-3187 unit test for findComplementFeaturesAtResidue commit | commitdiff | tree | snapshot
2020-03-06 Ben SoaresJAL-3394 getdown jar files had not been re-compiled commit | commitdiff | tree | snapshot
2020-03-06 gmungocJAL-3407 added 3468 to release notes commit | commitdiff | tree | snapshot
2020-03-06 gmungocMerge branch 'feature/JAL-3468featureDescriptionEllipsi... commit | commitdiff | tree | snapshot
2020-03-06 gmungocJAL-3468 i18n and additional unit tests feature/JAL-3468featureDescriptionEllipsis commit | commitdiff | tree | snapshot
2020-03-06 gmungocJAL-3407 release note tweaks, added 3533 3538 3534... commit | commitdiff | tree | snapshot
2020-03-05 Jim ProcterMerge branch 'improvement/JAL-3543_dont_report_null_ver... commit | commitdiff | tree | snapshot
2020-03-04 Ben SoaresJAL-3468 small tidy commit | commitdiff | tree | snapshot
2020-03-04 Ben SoaresJAL-3468 improvement to feature description truncation... commit | commitdiff | tree | snapshot
2020-03-04 Ben SoaresJAL-3468 Fixed tests and added test for max-length... commit | commitdiff | tree | snapshot
2020-03-04 Ben SoaresJAL-3468 Obsessively fixed self-closing <br/> tags commit | commitdiff | tree | snapshot
2020-03-03 soaresJAL-3468 Adapted methods to report how many features... commit | commitdiff | tree | snapshot
2020-03-03 Jim ProcterMerge branch 'groovy/JAL-3547_conservationsequenceexpor... commit | commitdiff | tree | snapshot
2020-03-03 Jim ProcterJAL-3547 groovy script to get the conservation sequence... commit | commitdiff | tree | snapshot
2020-03-02 Jim ProcterJAL-3407 redact Java 8 incompatible '<>' with anonymous... commit | commitdiff | tree | snapshot
2020-02-27 Jim ProcterMerge branch 'bug/JAL-3412idWidthDiscrepancy' into... commit | commitdiff | tree | snapshot
2020-02-27 Jim ProcterJAL-3407 release notes for JAL-3412 commit | commitdiff | tree | snapshot
2020-02-27 Jim ProcterJAL-3412 patch for failing test commit | commitdiff | tree | snapshot
2020-02-27 Ben SoaresJAL-3543 remove debugging output improvement/JAL-3543_dont_report_null_versions_in_java_console commit | commitdiff | tree | snapshot
2020-02-27 Ben SoaresMerge branch 'develop' into improvement/JAL-3543_dont_r... commit | commitdiff | tree | snapshot
2020-02-27 Ben SoaresJAL-3543 Conditional reporting of Install4j and Getdown... commit | commitdiff | tree | snapshot
2020-02-27 Jim ProcterMerge branch 'bug/JAL-3412idWidthDiscrepancy' into... bug/JAL-3412idWidthDiscrepancy commit | commitdiff | tree | snapshot
2020-02-27 Jim ProcterJAL-3407 JAL-3296 release notes commit | commitdiff | tree | snapshot
2020-02-27 Jim ProcterMerge branch 'bug/JAL-3296changeStartInvalidateCursor... commit | commitdiff | tree | snapshot
2020-02-26 Jim ProcterJAL-3477 jalview.jvmmemmax / jvmmemmax maximum value... commit | commitdiff | tree | snapshot
2020-02-26 Jim ProcterMerge branch 'bug/JAL-3477_memory_max_allocation' into... commit | commitdiff | tree | snapshot
2020-02-26 Jim ProcterJAL-3407 release notes for JAL-3449 JAL-3393 JAL-3420... commit | commitdiff | tree | snapshot
2020-02-26 Jim ProcterMerge branch 'improvement/JAL-3449_add_install4j_instal... commit | commitdiff | tree | snapshot
2020-02-26 Jim ProcterJAL-3541 docs for enabling OpenClover coverage reports... commit | commitdiff | tree | snapshot
2020-02-26 Jim ProcterJAL-3541 removed clover report generation debug flag... commit | commitdiff | tree | snapshot
2020-02-26 Jim ProcterJAL-3541 configurables for clover report generation... commit | commitdiff | tree | snapshot
2020-02-25 Jim ProcterJAL-3541 track own jalview.gui.Desktop clover source... commit | commitdiff | tree | snapshot
2020-02-25 Jim ProcterJAL-3541 2g heap for clover xml and clover html - remov... commit | commitdiff | tree | snapshot
2020-02-25 Jim ProcterJAL-3541 add verbose and heap setting for HTML Report... commit | commitdiff | tree | snapshot
2020-02-25 Jim ProcterJAL-3541 use javaExec to run clover tasks commit | commitdiff | tree | snapshot
2020-02-21 Jim ProcterMerge branch 'bug/JAL-3536getCrossrefTwice' into develop commit | commitdiff | tree | snapshot
2020-02-21 Jim ProcterJAL-3186 ensure transparency slider position is updated... commit | commitdiff | tree | snapshot
2020-02-21 Jim ProcterJAL-3186 avoid repainting twice in splitframe commit | commitdiff | tree | snapshot
2020-02-21 Jim ProcterMerge branch 'features/JAL-3187_uitweaks' into develop commit | commitdiff | tree | snapshot
2020-02-21 Jim ProcterMerge branch 'develop' into features/JAL-3187_uitweaks commit | commitdiff | tree | snapshot
2020-02-20 Jim ProcterJAL-3187 nice to have enabling/disabling of apply/cance... features/JAL-3187_uitweaks commit | commitdiff | tree | snapshot
2020-02-20 Jim ProcterJAL-3187 i18n commit | commitdiff | tree | snapshot
2020-02-20 Jim ProcterJAL-3187 use the recommended way of catching tab select... commit | commitdiff | tree | snapshot
2020-02-20 gmungocJAL-3187 repaint complement after loading on features commit | commitdiff | tree | snapshot
2020-02-20 Jim ProcterJAL-3187 individual feature settings panel has revert... commit | commitdiff | tree | snapshot
2020-02-19 Jim ProcterJAL-3187 i18n for titles in windows/tabs commit | commitdiff | tree | snapshot
2020-02-19 Jim ProcterJAL-3535 todo re titles for CDS and Protein views in... commit | commitdiff | tree | snapshot
2020-02-19 Jim ProcterJAL-3187 - tabbed pane is nulled when feature settings... commit | commitdiff | tree | snapshot
2020-02-19 Ben SoaresMerge branch 'develop' into improvement/JAL-3449_add_in... improvement/JAL-3449_add_install4j_installer_getdown_versions_to_jalview_console.2 commit | commitdiff | tree | snapshot
2020-02-19 Ben SoaresJAL-3289 Improved the name of the channel_launch.jvl... commit | commitdiff | tree | snapshot
2020-02-19 Jim ProcterJAL-3187 JAL-2764 close feature settings when parent... commit | commitdiff | tree | snapshot
2020-02-19 Ben SoaresMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2020-02-19 Ben SoaresJAL-3337 Adding .settings/org.eclipse.jdt.core.jalview... commit | commitdiff | tree | snapshot
2020-02-19 Jim ProcterMerge branch 'patch/JAL-3538_fontantialiasingbydefault... commit | commitdiff | tree | snapshot
2020-02-19 Jim ProcterJAL-3538 JAL-3407 release notes commit | commitdiff | tree | snapshot
2020-02-19 Jim ProcterJAL-3407 release next week :D commit | commitdiff | tree | snapshot
2020-02-19 Jim ProcterJAL-3538 anti-aliasing enabled by default commit | commitdiff | tree | snapshot
2020-02-19 Ben SoaresJAL-3449 helper task to perform getdown digest on any dir commit | commitdiff | tree | snapshot
2020-02-19 Ben SoaresJAL-3449 ensuring latest getdown jar files after merge commit | commitdiff | tree | snapshot
2020-02-18 Ben SoaresJAL-3449 merge from develop commit | commitdiff | tree | snapshot
2020-02-18 Jim ProcterJAl-3187 JAL-3535 JAL-3534 update open feature settings... commit | commitdiff | tree | snapshot
2020-02-18 Mungo CarstairsJAL-3536 JAL-3187 don't create duplicate CDS-to-protein... bug/JAL-3536getCrossrefTwice commit | commitdiff | tree | snapshot
2020-02-17 Ben SoaresJAL-3341 Increase number of lines looked at by test... commit | commitdiff | tree | snapshot
2020-02-17 Ben SoaresJAL-3289 Added option and documentation for a TEST... commit | commitdiff | tree | snapshot
2020-02-17 Ben SoaresJAL-3289 Updated doc/building.md to explain possible... commit | commitdiff | tree | snapshot
2020-02-17 Ben SoaresJAL-3252 download-jres.sh helper script for keeping... commit | commitdiff | tree | snapshot
2020-02-17 Jim ProcterJAL-3536 failing test and test data commit | commitdiff | tree | snapshot
2020-02-17 Jim ProcterJAL-3534 patch for simple case (Protein or Nucleotide... commit | commitdiff | tree | snapshot
2020-02-17 Ben SoaresJAL-3252 tgz unpacking no longer needed by getdown... commit | commitdiff | tree | snapshot
2020-02-17 Jim ProcterJAL-3187 fix for JAL-3533 on CDS/Protein tabbed feature... commit | commitdiff | tree | snapshot
2020-02-17 Jim ProcterJAL-3187 JAL-3533 JAL-3535 set feature settings dialog... commit | commitdiff | tree | snapshot
2020-02-17 Jim ProcterJAL-3187 better semantics for feature settings closed... commit | commitdiff | tree | snapshot
2020-02-14 Ben SoaresJAL-3394 A little streamlining and fixing of helper... commit | commitdiff | tree | snapshot
2020-02-14 Ben SoaresJAL-3394 remove no longer used files commit | commitdiff | tree | snapshot
2020-02-14 Jim ProcterJAL-3187 alternative solution - gather feature settings... commit | commitdiff | tree | snapshot
2020-02-14 Jim ProcterJAL-1354 JAL-3528 fix bug from b594d516dac69eebcccdc743... commit | commitdiff | tree | snapshot
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