jalview.git
2019-08-23 gmungocJAL-3141 correct cast of spinner value develop
2019-08-22 gmungocJAL-3187 case-insensitive codon variant calculation
2019-08-21 gmungocJAL-3187 minor code tidying, todo removal
2019-08-09 gmungocJAL-3187 removal of variant feature (non-virtual) trans...
2019-08-07 gmungocJAL-3187 (fudge) look in both alignments for stored... feature/JAL-3187linkedFeatures
2019-08-07 gmungocMerge branch 'develop' into feature/JAL-3187linkedFeatures
2019-07-31 gmungocJAL-3389 add .py to restored Chimera session filename...
2019-07-31 gmungocMerge branch 'bug/JAL-3388structureChooserSorting'...
2019-07-30 gmungocJAL-3198 more efficient Sequence.getDisplayId()
2019-07-30 gmungocJAL-3388 correct class for column 0 Ref Sequence bug/JAL-3388structureChooserSorting
2019-07-29 gmungocJAL-3386 correct wrapped width calculation for headless...
2019-07-29 gmungocJAL-3377 more reused of SeqCanvas.computeWrappedGeometry
2019-07-29 gmungocJAL-3377 add seq-annotations gap to cheight not to...
2019-07-29 gmungocJAL-3377 Javadoc added for getWrappedHeight()
2019-07-29 gmungocJAL-3377 corrected wrapped widths height for IdCanvas
2019-07-29 gmungocJAL-3377 include seq-annotation spacing in getWrappedHe...
2019-07-26 gmungocMerge branch 'features/JAL-3375vcfValidation' into
2019-07-26 gmungocJAL-1793 only decode specific special characters in...
2019-07-26 gmungocJAL-3376 capture VCF POS, ID, QUAL, FILTER as feature... features/JAL-3375vcfValidation
2019-07-26 gmungocJAL-3375 format validate VCF Integer and Float fields
2019-07-25 gmungocJAL-3375 ignore '.' values for VCF data
2019-07-16 gmungocMerge branch 'develop' into feature/JAL-3187linkedFeatures
2019-07-16 gmungocJAL-2987 tolerate null double values when formatting...
2019-07-10 gmungocMerge branch 'develop' into feature/JAL-3187linkedFeatures
2019-07-10 Jim ProcterJAL-3289 bamboo properties for ‘BUILD’ getdown channel...
2019-07-10 Jim ProcterJAL-3289 bamboo properties for ‘BUILD’ getdown channel
2019-07-08 gmungocJAL-3187 derived peptide variants tweaks and tests
2019-07-05 gmungocJAL-3187 initial refactoring towards peptide variant...
2019-07-05 Ben SoaresJAL-1544 fixed a html encoding of '<' (%lt; -> &lt...
2019-07-05 gmungocJAL-1793 apply URL decoding when saving VCF attribute...
2019-07-04 Jim ProcterJAL-3111 correct JVL appbase for 2.10.5 via getdown
2019-07-04 Jim ProcterMerge branch 'task/JAL-3337-rm-lib-update-sourceDist...
2019-07-04 Jim ProcterMerge branch 'develop' of source.jalview.org/git/jalvie...
2019-07-04 Jim ProcterJAL-3337 round-and-round the process source files again
2019-07-04 Jim ProcterJAL-3337 more includes and excludes
2019-07-04 Jim ProcterJAL-3337 remove the old lib directory ! task/JAL-3337-rm-lib-update-sourceDist
2019-07-04 Jim ProcterJAL-3337 rejig the source distribution generation to...
2019-07-04 Jim ProcterJAL-3111 replace year in header for help pages and...
2019-07-04 Ben SoaresJAL-3225 try/catch for non-deprecated/deprecated proper...
2019-07-04 Ben SoaresJAL-3353 Change to build.gradle to use the file://...
2019-07-04 gmungocMerge branch 'develop' of https://source.jalview.org...
2019-07-04 gmungocJAL-3111 help pages minor corrections
2019-07-04 Ben SoaresJAL-3348 fixed an internal href in help to allow building
2019-07-04 Ben SoaresJAL-3337 adjusted building doc as sourceDist uses gradl...
2019-07-04 Jim ProcterMerge branch 'task/JAL-3348_document_cli_memory_setting...
2019-07-04 Jim ProcterJAL-3111 JAL-3348 JVL file documentation
2019-07-04 Jim ProcterJAL-3348 revised bsoares memory settings documentation...
2019-07-04 Ben SoaresMerge branch 'develop' into task/JAL-3348_document_cli_...
2019-07-03 Ben SoaresJAL-3348 memory.html documentation finished for 2.11.0
2019-07-03 Ben SoaresJAL-3348 jvmmempc in jvl file now works in linux
2019-07-03 Ben SoaresJAL-3348 jvmmempc multiple values shouldn't be merged
2019-07-03 Jim ProcterJAL-3111 tidy up lists/indentation for release notes
2019-07-03 Jim ProcterJAL-3111 Java 11 only and 'onwards'
2019-07-03 Jim ProcterJAL-3111 more whatsNew tweaks
2019-07-03 Jim ProcterMerge branch 'task/JAL-3337_gradle_tasks_sourceDist_and...
2019-07-03 Jim ProcterJAL-3111 more whats new
2019-07-03 Ben SoaresJAL-3348 start of new memory setting text
2019-07-03 Ben SoaresJAL-3348 jvmmempc allowed in jvl file
2019-07-03 Ben SoaresMerge branch 'develop' into task/JAL-3348_document_cli_...
2019-07-03 Jim ProcterMerge branch 'documentation/JAL-2843_featureFiltersForm...
2019-07-03 Ben SoaresJAL-3348 prepping getdown to pass JVM command line...
2019-07-02 Jim ProcterJAL-3111 updated what’s new… still more to come !
2019-07-02 Jim ProcterJAL-3111 updated privacy statement to remove mention...
2019-07-02 Jim ProcterJAL-3111 JAL-3150 revised Jalview archive documentation...
2019-07-02 Jim ProcterJAL-3111 JAL-3348 removed pre 2.11 instructions on...
2019-07-02 Jim ProcterJAL-3111 JAL-3280 hide the version check preference...
2019-07-02 Jim ProcterJAL-3111 tidied up preferences dialog documentation
2019-07-02 Jim ProcterJAL-3111 fix broken helpTOC link
2019-07-02 Jim ProcterMerge branch 'tasks/JAL-3311_removeVamsasMenu' into...
2019-07-02 Jim ProcterMerge branch 'develop' into tasks/JAL-3311_removeVamsasMenu
2019-07-02 Ben SoaresMerge branch 'develop' into task/JAL-3337_gradle_tasks_...
2019-07-02 Ben SoaresJAL-3337 Tidied up j8libs in THIRDPARTYLIBS. Replaced...
2019-07-02 Jim ProcterJAL-3111 release date now 4th July 2019 - codename...
2019-07-02 Jim ProcterMerge branch 'documentation/JAL-3111_release_211' into...
2019-07-02 Jim ProcterJAL-3111 formatting
2019-07-02 Jim ProcterJAL-3111 new known defect from JAL-797
2019-07-02 Jim ProcterJAL-3111 release notes for JAL-2789 JAL-2744 JAL-1889...
2019-07-02 Jim ProcterJAL-3111 whats new and JAL-2738 JAL-2743 expanded help...
2019-07-02 Ben SoaresMerge branch 'develop' into task/JAL-3337_gradle_tasks_...
2019-07-02 Ben SoaresJAL-3337 Excluding j11modDir from source distribution...
2019-07-02 Ben SoaresJAL-3337 Updated the j11lib jars (don't need to be...
2019-07-02 Jim ProcterJAL-3337 gradle.properties for publish help as html...
2019-07-02 Jim ProcterJAL-3337 publish help as html pages with GA tracker...
2019-07-02 Ben SoaresJAL-3337 starting to add to THIRDPARTYLIBS
2019-07-01 Ben SoaresJAL-3322 increase concurrent downloads in getdown
2019-07-01 Ben SoaresJAL-3333 removed unused variable
2019-07-01 Ben SoaresJAL-3337 Added some more files to source tar.gz file
2019-07-01 Ben SoaresJAL-3337 added gzip compression. Archive filename now...
2019-07-01 Ben SoaresJAL-3322 getdown jars with network timeouts applied
2019-07-01 Ben SoaresJAL-3332 Sensible default timeout values for network...
2019-07-01 Ben SoaresJAL-3333 using floats for smoother weighting
2019-07-01 Ben SoaresJAL-3337 added sourceDist task to gradle. Creates...
2019-07-01 Ben SoaresJAL-3337 update to JAVA-11-README to state current...
2019-07-01 Ben SoaresMerge branch 'develop' into task/JAL-3337_gradle_tasks_...
2019-06-29 Ben SoaresJAL-3333 Sorry couldn't resist adding a bit of weightin...
2019-06-29 Ben SoaresJAL-3333 Title text now appears instantly. Altering...
2019-06-28 Ben SoaresMerge branch 'bug/JAL-3333_Blurry_fonts_in_WebServiceIn...
2019-06-28 Ben SoaresJAL-3333 changed RGB model. Tested in mojave and Windo...
2019-06-28 Jim ProcterJAL-3111 release notes for JAL-3330 JAL-3021 (tweak...
2019-06-28 Ben SoaresJAL-3337 start of a Tar task
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