jalview.git
2019-01-24 gmungocJAL-3018 Ensembl version updated to 9.0 develop
2019-01-23 gmungocJAL-3063 correct handling of absent choice element...
2019-01-17 Jim ProcterJAL-3116 clear out whitespace when materialising Sequen...
2019-01-16 Jim ProcterMerge branch 'features/pca_jaxb_datasetrefs_JAL-3171_JA...
2019-01-15 Jim ProcterJAL-1767 test that changing view association for PCA... features/pca_jaxb_datasetrefs_JAL-3171_JAL-3063_JAL-1767
2019-01-15 Jim ProcterJAL-1767 refactor associated view logic to public metho...
2019-01-15 Jim ProcterJAL-1767 patch buggy PCA view association test
2019-01-14 gmungocJAL-3186 remove Variable Colour from popup menu
2019-01-14 gmungocJAL-3186 remove duplicate message keys
2019-01-14 gmungocJAL-2069 wider dialog so all fields show!
2019-01-14 gmungocJAL-2069 clear any error colour when setting threshold...
2019-01-14 gmungocJAL-3125 tidy up
2019-01-14 gmungocJAL-3125 avoid slider 'rounding' threshold field value
2019-01-09 Jim ProcterJAL-1767 failing test to check if the PCA view associat...
2019-01-09 Jim ProcterMerge branch 'feature/JAL-3063JAXB' into features/pca_j...
2019-01-09 Jim ProcterJAL-3063 remove stale JAXB binding POJO
2019-01-09 Jim ProcterMerge branch 'feature/JAL-3063JAXB' into features/pca_j...
2019-01-09 Jim ProcterJAL-3063 - ant task for regenerating JAXB schema -... feature/JAL-3063JAXB
2019-01-03 gmungocJAL-1889 additional test for clover-added fields
2019-01-03 gmungocJAL-1889 ignore 'synthetic' fields added for jacoco
2018-12-21 gmungocJAL-1767 minimise local variable scope
2018-12-20 Jim ProcterJAL-1767 port save/load PCA panel to JAXB - JAL-3063
2018-12-20 Jim ProcterJAL-3171 JAL-3063 merge updates from JAL-1767
2018-12-19 Jim ProcterMerge branch 'features/JAL-1767pcaInProject' into bug...
2018-12-19 gmungocJAL-2791 JAL-2808 correct Javadoc for api method
2018-12-19 gmungocJAL-3032 ignore /site also on non-JS branches
2018-12-18 Jim ProcterJAL-2846 ahem - proper release note for this fix from...
2018-12-18 Jim ProcterJAL-3178 known defect in release notes
2018-12-17 Jim ProcterJAL-3111 JAL-2846 release notes
2018-12-17 Jim ProcterMerge branch 'bug/JAL-2846' into develop
2018-12-17 Jim ProcterJAL-3111 tweaked release notes and documented JAL-2864
2018-12-17 Jim ProcterMerge branch 'bug/JAL-2864nullOverviewCanvas' into...
2018-12-17 Jim ProcterJAL-2865 release notes
2018-12-17 Jim ProcterMerge branch 'bug/JAL-2750' into develop
2018-12-17 Jim ProcterMerge branch 'task/JAL-3174_fixed_filename_tests' into...
2018-12-17 Jim ProcterJAL-3174 backout un-needed stacktrace for exception...
2018-12-17 Ben SoaresJAL-3174 Merging in some test filename-case fixes task/JAL-3174_fixed_filename_tests
2018-12-17 Jim ProcterMerge branch 'bug/JAL-2541cutRelocateFeatures' into...
2018-12-17 Jim ProcterJAL-2541 JAL-2822 release notes
2018-12-17 Jim ProcterJAL-3111 bump release 2.11 release to January 2019
2018-12-17 Jim ProcterMerge branch 'develop' into bug/JAL-2541cutRelocateFeatures
2018-12-14 Jim ProcterJAL-3171 dataset reference tests now in Functional... bug/JAL-3171_maintain_datasets_across_views
2018-12-14 Jim ProcterJAL-3171 record mapping between unmarshalled sequence...
2018-12-14 Jim ProcterJAL-3171 raise warning when a dataset reference exists...
2018-12-14 Jim ProcterJAL-3171 more complex project test - where sequences...
2018-12-14 Jim ProcterJAL-3171 resolve dataset for imported projects via...
2018-12-14 Jim ProcterJAL-3171 failing test for legacy projects and fixing...
2018-12-14 Jim ProcterJAL-3171 register existing dataset for new view
2018-12-14 Jim ProcterJAL-3171 failing test checking preservation of dataset
2018-12-06 gmungocJAL-1854 fix Checkstyle import violations
2018-12-06 gmungocJAL-1854 Checkstyle updated to 8.12
2018-11-08 gmungocJAL-1889 ignore Clover instrumentation in test (second...
2018-11-08 gmungocJAL-1889 unit test tweaks for running on server
2018-09-28 gmungocJAL-3063 service param files read/saved using JAXB...
2018-09-28 gmungocJAL-3063 top level element added to JalviewWsParamSet.xsd
2018-09-28 gmungocJAL-3063 comments re use of xjc to generate Java bindin...
2018-09-24 gmungocJAL-3063 tidy commented out code
2018-09-21 gmungocJAL-3063 wrappers with check for null getting optional...
2018-09-20 gmungocJAL-2843 tweaks to help text for filters
2018-09-20 gmungocJAL-2843 help text for colour by attribute, feature...
2018-09-19 Jim ProcterMerge branch 'bug/JAL-3120restoreFeatureColour' into...
2018-09-19 gmungocJAL-3120 preserve plain colour value when changing...
2018-09-19 gmungocMerge branch 'develop' of https://source.jalview.org...
2018-09-19 Jim ProcterMerge branch 'cherrypick/JAL-2808_notabs' into develop
2018-09-19 Jim ProcterJAL-2808 JAL-3026 deleted all commented out tab code...
2018-09-19 gmungocJAL-2808 JAL-3032 drop tabbed layout for Colours and...
2018-09-19 gmungocJAL-3063 use JAXB for 'Save as Project' and load projec...
2018-09-19 gmungocJAL-3063 unit test for save/load project switched to...
2018-09-18 gmungocJAL-3063 Save/Load user defined colours using JAXB
2018-09-18 gmungocJAL-3063 Save/Load user colour scheme using JAXB
2018-09-18 gmungocJAL-3063 top level element added to colours schema...
2018-09-18 gmungocJAL-3063 New View via JAXB
2018-09-18 gmungocJAL-3063 temporary extra menu option to save/load proje...
2018-09-18 gmungocJAL-3063 first version of Jalview2XML using JAXB to...
2018-09-18 gmungocJAL-3063 JAXB binding classes generated by xjc from...
2018-09-18 gmungocJAL-3063 tweak schema so JAXB tool xjc recognises XML...
2018-09-18 gmungocJAL-3063 tweak schema so JAXB generates enums for enume...
2018-09-18 Jim ProcterJAL-2865 release notes
2018-09-17 gmungocJAL-3116 test method renamed to match code
2018-09-17 gmungocJAL-3116 unit tests adapted to EMBL over JAXB
2018-09-14 gmungocJAL-3116 parse EMBL XML with JAXB (todo: update unit...
2018-09-13 gmungocJAL-3116 Uniprot XML unmarshalled using JAXB not Castor
2018-09-12 gmungocMerge branch 'develop' of https://source.jalview.org...
2018-09-12 Jim ProcterMerge branch 'merge/JAL-3091_JAL-3111_develop_211'...
2018-09-12 gmungocMerge branch 'develop' of https://source.jalview.org...
2018-09-12 gmungocJAL-1551 reinstated Save actions
2018-09-11 Jim ProcterJAL-3112 increased TEST_TIMEOUT to 9000ms - needed...
2018-09-11 Jim ProcterJAL-3112 Use classgraph to reconstruct the classpath...
2018-09-11 Jim ProcterMerge branch 'merge/JAL-3091_JAL-3111_develop_211'... releases/Release_2_11_Branch
2018-09-11 Jim ProcterJAL-3111 drop hts-1.33 as a dependency (in favour of...
2018-09-11 Jim ProcterMerge branch 'merge/JAL-3091_JAL-3111_develop_211'...
2018-09-11 Jim ProcterMerge branch 'releases/Release_2_11_Branch' into merge...
2018-09-11 Jim ProcterMerge branch 'develop' into releases/Release_2_11_Branch
2018-09-09 Jim ProcterJAL-3091 changed release date to 10th September - tweak... releases/Release_2_10_5_Branch Release_2_10_5
2018-09-09 Jim ProcterJAL-3106 normalise extension before checking if it...
2018-09-07 Jim ProcterJAL-3107 update any group associated annotation rows...
2018-09-07 Jim ProcterJAL-2988 JAL-2968 renamed patched VAqua5 to VAqua5...
2018-09-07 Jim ProcterJAL-2988 if selected file is null (On Java 10/OSX ...
2018-09-07 Jim ProcterJAL-2988 workaround: overload getSelectedFile() because...
2018-09-07 Jim ProcterJAL-3106 use .jvp as default
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