jalview.git
5 days ago gmungocJAL-1854 fix Checkstyle import violations develop
5 days ago gmungocJAL-1854 Checkstyle updated to 8.12
2018-11-08 gmungocJAL-1889 ignore Clover instrumentation in test (second...
2018-11-08 gmungocJAL-1889 unit test tweaks for running on server
2018-09-20 gmungocJAL-2843 tweaks to help text for filters
2018-09-20 gmungocJAL-2843 help text for colour by attribute, feature...
2018-09-19 Jim ProcterMerge branch 'bug/JAL-3120restoreFeatureColour' into...
2018-09-19 gmungocJAL-3120 preserve plain colour value when changing...
2018-09-19 gmungocMerge branch 'develop' of https://source.jalview.org...
2018-09-19 Jim ProcterMerge branch 'cherrypick/JAL-2808_notabs' into develop
2018-09-19 Jim ProcterJAL-2808 JAL-3026 deleted all commented out tab code...
2018-09-19 gmungocJAL-2808 JAL-3032 drop tabbed layout for Colours and...
2018-09-18 Jim ProcterJAL-2865 release notes
2018-09-12 gmungocMerge branch 'develop' of https://source.jalview.org...
2018-09-12 Jim ProcterMerge branch 'merge/JAL-3091_JAL-3111_develop_211'...
2018-09-12 gmungocMerge branch 'develop' of https://source.jalview.org...
2018-09-12 gmungocJAL-1551 reinstated Save actions
2018-09-11 Jim ProcterJAL-3112 increased TEST_TIMEOUT to 9000ms - needed...
2018-09-11 Jim ProcterJAL-3112 Use classgraph to reconstruct the classpath...
2018-09-11 Jim ProcterMerge branch 'merge/JAL-3091_JAL-3111_develop_211'... releases/Release_2_11_Branch
2018-09-11 Jim ProcterJAL-3111 drop hts-1.33 as a dependency (in favour of...
2018-09-11 Jim ProcterMerge branch 'merge/JAL-3091_JAL-3111_develop_211'...
2018-09-11 Jim ProcterMerge branch 'releases/Release_2_11_Branch' into merge...
2018-09-11 Jim ProcterMerge branch 'develop' into releases/Release_2_11_Branch
2018-09-09 Jim ProcterJAL-3091 changed release date to 10th September - tweak... releases/Release_2_10_5_Branch Release_2_10_5
2018-09-09 Jim ProcterJAL-3106 normalise extension before checking if it...
2018-09-07 Jim ProcterJAL-3107 update any group associated annotation rows...
2018-09-07 Jim ProcterJAL-2988 JAL-2968 renamed patched VAqua5 to VAqua5...
2018-09-07 Jim ProcterJAL-2988 if selected file is null (On Java 10/OSX ...
2018-09-07 Jim ProcterJAL-2988 workaround: overload getSelectedFile() because...
2018-09-07 Jim ProcterJAL-3106 use .jvp as default
2018-09-07 Jim ProcterJAL-3105 fix for focus transfer after window closed...
2018-09-06 Jim ProcterJAL-3091 code committed in error (failed patch for...
2018-09-06 Jim ProcterJAL-3091 release notes for JAL-3104
2018-09-06 Jim ProcterJAL-3105 reallocate quality and consensus annotation...
2018-09-06 Jim ProcterJAL-2854 compute visible annotation panel height and...
2018-09-05 Jim ProcterJAL-3065 don’t quote class path args for Runtime.exec...
2018-09-05 Jim ProcterJAL-3091 update whats new!
2018-09-05 Jim ProcterJAL-3091 update Java 10 known issues/workarounds in...
2018-09-05 Jim ProcterJAL-3091 known defect in whats new for Java 10 issues...
2018-09-05 Jim ProcterJAL-3091 add Ben Soares to authors list and switch...
2018-09-05 Jim ProcterJAL-3091 release notes for updated memory settings
2018-09-05 Jim ProcterJAL-3091 release notes
2018-09-05 Jim ProcterJAL-3101 increase default heap size in IA and JNLP...
2018-09-05 Jim ProcterMerge branch 'patch/VAqua_saveload_update_JAL-2988...
2018-09-05 Jim ProcterJAL-2988 update InstallAnywhere install dependencies... patch/VAqua_saveload_update_JAL-2988
2018-09-05 Jim ProcterMerge branch 'bug/JAL-3076ensemblGeneId' into develop
2018-09-05 Jim ProcterJAL-3091 release date set for Thursday 6th September
2018-09-05 Jim ProcterMerge branch 'bug/JAL-3065_DH_keyPair_Exception_nogroov...
2018-09-05 Jim ProcterJAL-3065 - amended commit 4906697ab6e5a79fbce3baae89f7... bug/JAL-3065_DH_keyPair_Exception_nogroovysettings
2018-09-04 Jim ProcterJAL-3091 JAL-2988 release notes re Java 10 and OSX
2018-09-03 Jim ProcterMerge branch 'patch/VAqua_saveload_update_JAL-2988...
2018-09-03 Jim ProcterMerge branch 'releases/Release_2_10_5_Branch' of source...
2018-09-03 Jim ProcterJAL-3091 -Dnosign to disable jar signing phase of build
2018-09-03 Jim ProcterJAL-3091 -Dnosign to disable jar signing phase of build
2018-09-03 Jim ProcterJAL-3091 release notes and whats new !
2018-09-03 gmungocMerge branch 'trialMerge' into releases/Release_2_10_5_...
2018-09-03 gmungocJAL-3076 fetch Ensembl sequence as JSON instead of...
2018-09-03 Jim ProcterJAL-3065 release notes
2018-09-03 Jim ProcterMerge branch 'bug/JAL-3065_DH_keyPair_Exception' into...
2018-09-03 Jim ProcterJAL-3076 clarify javadoc handling single sequence respo... bug/JAL-3076ensemblGeneId
2018-09-03 Jim ProcterJAL-3087 release notes
2018-08-31 Jim ProcterJAL-3095 account for sequence start when highlighting...
2018-08-31 Jim ProcterJAL-3053 JAL-3061 JAL-3095 release notes
2018-08-31 Jim ProcterMerge branch 'bug/JAL-3061_RNA_secondary_structure_anno...
2018-08-31 Jim ProcterMerge branch 'releases/Release_2_10_5_Branch' of source...
2018-08-31 Jim ProcterJAL-3095 release notes
2018-08-31 Jim Procterjava doc and fix for JAL-3095 - region of trimmed RNA...
2018-08-31 gmungocJAL-3003 remove redundant call to drawSelectionGroup
2018-08-30 Jim ProcterJAL-3092 release notes
2018-08-30 Jim ProcterJAL-3092 make sure base pair counter is always moved... patch/JAL-3092_RNAhelixhang
2018-08-29 Jim ProcterJAL-3091 release notes for JAL-3003 JAL-3059
2018-08-28 Jim ProcterJAL-3003 different coloured borders in demo annotation...
2018-08-28 gmungocJAL-3059 use correct border colour for groups
2018-08-28 gmungocJAL-3003 draw selection group outline on main graphics...
2018-08-28 Jim ProcterJAL-247 release notes
2018-08-28 gmungocJAL-247 comment to clarify wrapped print algorithm
2018-08-28 gmungocJAL-247 print/export wrapped uses common code to draw...
2018-08-28 gmungocJAL-3087 include full alignment height in repeating...
2018-08-28 gmungocJAL-247 draw/print sequence ids now uses common code...
2018-08-28 Jim ProcterJAL-3091 release 2.10.5 added to release notes
2018-08-27 Ben SoaresJAL-3061 / JAL-3053 bug/JAL-3061_RNA_secondary_structure_annotation_gap_character
2018-08-22 Jim ProcterJAL-2988 workaround for jalview save as dialogs - clear...
2018-08-22 Jim ProcterJAL-2988 JAL-2976 update to latest VAqua release: VAqua5
2018-08-15 gmungocJAL-3080 remove tree partition if no groups created feature/JAL-3080clearTreeGroups
2018-08-14 gmungocJAL-3078 reset Tree font (only!) on Cancel bug/JAL-3078cancelTreeFont
2018-08-10 gmungocJAL-3018 updated to Ensembl REST 7.0
2018-08-10 gmungocJAL-3076 refactor for more efficient scan of 'gene...
2018-08-10 gmungocJAL-3076 fetch Ensembl sequence as JSON instead of...
2018-08-03 Ben SoaresJAL-3061
2018-08-03 Ben SoaresMerge branch 'bug/JAL-3061_RNA_secondary_structure_anno...
2018-08-02 Ben SoaresJAL-3053
2018-08-01 Jim ProcterMerge branch 'releases/Release_2_10_4_Branch' into...
2018-08-01 Jim ProcterMerge branch 'task/JAL-3047_clover2104b1_cherrypick... releases/Release_2_10_4_Branch
2018-08-01 Jim ProcterJAL-3047 don't set classes unconditionally (forgot... task/JAL-3047_clover2104b1_cherrypick
2018-08-01 Jim ProcterJAL-3047 don’t let the makedist task complete if a...
2018-08-01 Jim ProcterJAL-3047 ‘cloverclasses’ build directory for instrument...
2018-08-01 Jim ProcterJAL-3047 enable clover for testng
2018-08-01 Jim ProcterJAL-3047 ignore clover output dir
2018-07-31 bsoaresStockholm file for test
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