jalview.git
2019-01-18 gmungocJAL-3143 'id' not 'ID' attribute drives generation...
2019-01-17 Jim ProcterJAL-3116 clear out whitespace when materialising Sequen...
2019-01-16 Ben SoaresJAL-3141 Remove no longer used exampleLabel
2019-01-16 Jim ProcterMerge branch 'feature/JAL-3063jaxbNoCastor' into develop
2019-01-16 Jim ProcterMerge branch 'features/pca_jaxb_datasetrefs_JAL-3171_JA...
2019-01-15 Jim ProcterJAL-1767 test that changing view association for PCA... features/pca_jaxb_datasetrefs_JAL-3171_JAL-3063_JAL-1767
2019-01-15 Jim ProcterJAL-1767 refactor associated view logic to public metho...
2019-01-15 Jim ProcterJAL-1767 patch buggy PCA view association test
2019-01-14 Ben SoaresJAL-3141 Forgot this file, sorry!
2019-01-14 Ben SoaresJAL-3141 Added a 'Save Project as...' File menu item...
2019-01-14 Ben SoaresJAL-3141 Made more constants
2019-01-14 gmungocJAL-3186 remove Variable Colour from popup menu
2019-01-14 gmungocJAL-3186 remove duplicate message keys
2019-01-14 gmungocJAL-2069 wider dialog so all fields show!
2019-01-14 gmungocJAL-2069 clear any error colour when setting threshold...
2019-01-14 gmungocJAL-3125 tidy up
2019-01-14 gmungocJAL-3125 avoid slider 'rounding' threshold field value
2019-01-09 Ben SoaresJAL-3141 removed redundant method to tests
2019-01-09 Jim ProcterJAL-1767 failing test to check if the PCA view associat...
2019-01-09 Jim ProcterMerge branch 'feature/JAL-3063JAXB' into features/pca_j...
2019-01-09 Jim ProcterMerge branch 'feature/JAL-3063JAXB' into feature/JAL...
2019-01-09 Jim ProcterJAL-3063 remove stale JAXB binding POJO
2019-01-09 Jim ProcterMerge branch 'feature/JAL-3063JAXB' into features/pca_j...
2019-01-09 Jim ProcterMerge branch 'feature/JAL-3063JAXB' into feature/JAL...
2019-01-09 Jim ProcterJAL-3063 - ant task for regenerating JAXB schema -...
2019-01-09 Ben SoaresJAL-3141 language word ending corrections
2019-01-09 Ben SoaresJAL-3141 Added i18n for the example filenames in Prefer...
2019-01-09 Ben SoaresJAL-3141 forgot to add this file after extracting the...
2019-01-09 Ben SoaresJAL-3141 Made one more suggested change from code review
2019-01-08 Ben SoaresJAL-3141 Made some more suggested changes from code...
2019-01-08 Ben SoaresJAL-3141 Made some suggested changes from code review
2019-01-03 gmungocJAL-1889 additional test for clover-added fields
2019-01-03 gmungocJAL-1889 ignore 'synthetic' fields added for jacoco
2018-12-21 gmungocJAL-1767 minimise local variable scope
2018-12-20 Jim ProcterJAL-1767 port save/load PCA panel to JAXB - JAL-3063
2018-12-20 Jim ProcterJAL-3171 JAL-3063 merge updates from JAL-1767
2018-12-19 Jim ProcterMerge branch 'features/JAL-1767pcaInProject' into bug...
2018-12-19 gmungocJAL-2621 Overview uses hand cursor in drag box, crossha... bug/JAL-2621
2018-12-19 gmungocJAL-3178 include non-positional features in their group... bug/JAL-2791exportFilteredFeature
2018-12-19 gmungocJAL-2791 JAL-2808 correct Javadoc for api method
2018-12-19 gmungocJAL-3032 ignore /site also on non-JS branches
2018-12-18 Jim ProcterJAL-2846 ahem - proper release note for this fix from...
2018-12-18 Jim ProcterJAL-3178 known defect in release notes
2018-12-17 Jim ProcterJAL-3111 JAL-2846 release notes
2018-12-17 Jim ProcterMerge branch 'bug/JAL-2846' into develop
2018-12-17 Jim ProcterJAL-3111 tweaked release notes and documented JAL-2864
2018-12-17 Jim ProcterMerge branch 'bug/JAL-2864nullOverviewCanvas' into...
2018-12-17 Jim ProcterJAL-2865 release notes
2018-12-17 Jim ProcterMerge branch 'bug/JAL-2750' into develop
2018-12-17 Jim ProcterMerge branch 'task/JAL-3174_fixed_filename_tests' into...
2018-12-17 Jim ProcterJAL-3174 backout un-needed stacktrace for exception...
2018-12-17 Ben SoaresJAL-3174 Merging in some test filename-case fixes
2018-12-17 Jim ProcterMerge branch 'bug/JAL-2541cutRelocateFeatures' into...
2018-12-17 Jim ProcterJAL-2541 JAL-2822 release notes
2018-12-17 Jim ProcterJAL-3111 bump release 2.11 release to January 2019
2018-12-17 Jim ProcterMerge branch 'develop' into bug/JAL-2541cutRelocateFeatures
2018-12-14 Jim ProcterJAL-3171 dataset reference tests now in Functional... bug/JAL-3171_maintain_datasets_across_views
2018-12-14 Jim ProcterJAL-3171 record mapping between unmarshalled sequence...
2018-12-14 Jim ProcterJAL-3171 raise warning when a dataset reference exists...
2018-12-14 Jim ProcterJAL-3171 more complex project test - where sequences...
2018-12-14 Jim ProcterJAL-3171 resolve dataset for imported projects via...
2018-12-14 Jim ProcterJAL-3171 failing test for legacy projects and fixing...
2018-12-14 Jim ProcterJAL-3171 register existing dataset for new view
2018-12-14 Jim ProcterJAL-3171 failing test checking preservation of dataset
2018-12-10 gmungocJAL-1421 added type to List and Vector feature/JAL-3169cancelOverwrite
2018-12-10 gmungocJAL-3169 leave file browser open on Cancel in overwrite...
2018-12-06 gmungocJAL-1854 fix Checkstyle import violations
2018-12-06 gmungocJAL-1854 Checkstyle updated to 8.12
2018-12-03 gmungocJAL-3063 Castor removed from codebase
2018-12-03 gmungocMerge branch 'feature/JAL-3063JAXB' into feature/JAL...
2018-11-30 gmungocJAL-2420 don't offer Reveal All over alignment panel bug/JAL-2420revealAllMenu
2018-11-30 gmungocJAL-3166 catch NPE if all sequences are hidden bug/JAL-3166npeAllRowsHidden
2018-11-29 gmungocJAL-3140 updated IntervalStore jar
2018-11-29 gmungocJAL-3140 named tagged version of intervalstore.jar
2018-11-29 gmungocJAL-3140 NCList now via IntervalStore library
2018-11-28 gmungocJAL-3164 redraw complement overview on hide columns bug/JAL-3164complementOverview
2018-11-28 gmungocJAL-3158 additional calls to reset 'selection changed... bug/JAL-3158selectionBroadcasts
2018-11-22 gmungocJAL-3161 limit tooltip and status updates to visible... bug/JAL-3161annotationTooltipRange
2018-11-20 Ben Soares.gitignore changes
2018-11-19 gmungocJAL-3154 disable drag to reorder JTable columns bug/JAL-3154tableColumnDrag
2018-11-08 gmungocJAL-1889 ignore Clover instrumentation in test (second...
2018-11-08 gmungocJAL-1889 unit test tweaks for running on server
2018-11-05 Ben SoaresJAL-3141 Slightly improved message and more thorough...
2018-11-05 Ben SoaresJAL-3141 couple of minor fixes for example files being...
2018-11-02 Ben SoaresJAL-3141 Tests now available and working, bringing...
2018-11-01 Ben SoaresJAL-3141 Preferences 'Backups' tab now fits. Moved...
2018-10-31 Ben SoaresJAL-3141 Preferences 'Backups' tab now working. Doesn...
2018-10-25 gmungocJAL-3143 unit tests updated for code changes!
2018-10-25 Ben SoaresJAL-3141 Ostensibly all backups working for alignment...
2018-10-25 gmungocJAL-3143 comma-delimited feature attributes for alleles,
2018-10-25 gmungocJAL-3143 fetch Ensembl(Genomes) features as JSON not GFF
2018-10-24 Ben SoaresJAL-3141 Code checkout. Not compiling.
2018-10-24 Ben SoaresJAL-3141 Code checkout. Not compiling.
2018-10-23 Ben SoaresBackupFilter and other unfinished business
2018-10-23 gmungocJAL-3139 check group visibility when removing 'redundan... bug/JAL-3139colocatedFeatures
2018-10-22 Ben SoaresJAL-3141 Taken the backing up code out of FileChooser...
2018-10-22 Ben SoaresJAL-3141 Taken the backing up code out of FileChooser...
2018-10-22 Ben SoaresJAL-3141 Tidying
2018-10-19 Ben SoaresJAL-3141 Backup files being created with default suffix...
2018-10-08 gmungocJAL-1244 comments, javadoc, method signature tweaks feature/JAL-1244stretchStatusMsg
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