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jalview.git
2019-01-08 Ben SoaresJAL-3141 Made some more suggested changes from code... commit | commitdiff | tree | snapshot
2019-01-08 Ben SoaresJAL-3141 Made some suggested changes from code review commit | commitdiff | tree | snapshot
2019-01-08 gmungocJAL-3180 Disabled 'By Annotation' group colour menu... feature/JAL-3180colourAnnotationMenu commit | commitdiff | tree | snapshot
2019-01-04 gmungocJAL-3180 fix By Annotation selection state in colour... commit | commitdiff | tree | snapshot
2019-01-04 gmungocJAL-3181 refactor: extracted buildLinkMenu() for testab... feature/JAL-3181linkOrdering commit | commitdiff | tree | snapshot
2019-01-04 gmungocJAL-3181 simplified code and test commit | commitdiff | tree | snapshot
2019-01-03 gmungocJAL-3181 order link menu items commit | commitdiff | tree | snapshot
2019-01-03 gmungocJAL-1889 additional test for clover-added fields commit | commitdiff | tree | snapshot
2019-01-03 gmungocJAL-1889 ignore 'synthetic' fields added for jacoco commit | commitdiff | tree | snapshot
2018-12-21 gmungocJAL-1767 minimise local variable scope commit | commitdiff | tree | snapshot
2018-12-20 Jim ProcterJAL-1767 port save/load PCA panel to JAXB - JAL-3063 commit | commitdiff | tree | snapshot
2018-12-20 Jim ProcterJAL-3171 JAL-3063 merge updates from JAL-1767 commit | commitdiff | tree | snapshot
2018-12-19 Jim ProcterMerge branch 'features/JAL-1767pcaInProject' into bug... commit | commitdiff | tree | snapshot
2018-12-19 gmungocJAL-2621 Overview uses hand cursor in drag box, crossha... bug/JAL-2621 commit | commitdiff | tree | snapshot
2018-12-19 gmungocJAL-3178 include non-positional features in their group... bug/JAL-2791exportFilteredFeature commit | commitdiff | tree | snapshot
2018-12-19 gmungocJAL-2791 JAL-2808 correct Javadoc for api method commit | commitdiff | tree | snapshot
2018-12-19 gmungocJAL-3032 ignore /site also on non-JS branches commit | commitdiff | tree | snapshot
2018-12-18 Jim ProcterJAL-2846 ahem - proper release note for this fix from... commit | commitdiff | tree | snapshot
2018-12-18 Jim ProcterJAL-3178 known defect in release notes commit | commitdiff | tree | snapshot
2018-12-17 Jim ProcterJAL-3111 JAL-2846 release notes commit | commitdiff | tree | snapshot
2018-12-17 Jim ProcterMerge branch 'bug/JAL-2846' into develop commit | commitdiff | tree | snapshot
2018-12-17 Jim ProcterJAL-3111 tweaked release notes and documented JAL-2864 commit | commitdiff | tree | snapshot
2018-12-17 Jim ProcterMerge branch 'bug/JAL-2864nullOverviewCanvas' into... commit | commitdiff | tree | snapshot
2018-12-17 Jim ProcterJAL-2865 release notes commit | commitdiff | tree | snapshot
2018-12-17 Jim ProcterMerge branch 'bug/JAL-2750' into develop commit | commitdiff | tree | snapshot
2018-12-17 Jim ProcterMerge branch 'task/JAL-3174_fixed_filename_tests' into... commit | commitdiff | tree | snapshot
2018-12-17 Jim ProcterJAL-3174 backout un-needed stacktrace for exception... commit | commitdiff | tree | snapshot
2018-12-17 Ben SoaresJAL-3174 Merging in some test filename-case fixes commit | commitdiff | tree | snapshot
2018-12-17 Jim ProcterMerge branch 'bug/JAL-2541cutRelocateFeatures' into... commit | commitdiff | tree | snapshot
2018-12-17 Jim ProcterJAL-2541 JAL-2822 release notes commit | commitdiff | tree | snapshot
2018-12-17 Jim ProcterJAL-3111 bump release 2.11 release to January 2019 commit | commitdiff | tree | snapshot
2018-12-17 Jim ProcterMerge branch 'develop' into bug/JAL-2541cutRelocateFeatures commit | commitdiff | tree | snapshot
2018-12-14 Jim ProcterJAL-3171 dataset reference tests now in Functional... bug/JAL-3171_maintain_datasets_across_views commit | commitdiff | tree | snapshot
2018-12-14 Jim ProcterJAL-3171 record mapping between unmarshalled sequence... commit | commitdiff | tree | snapshot
2018-12-14 Jim ProcterJAL-3171 raise warning when a dataset reference exists... commit | commitdiff | tree | snapshot
2018-12-14 Jim ProcterJAL-3171 more complex project test - where sequences... commit | commitdiff | tree | snapshot
2018-12-14 Jim ProcterJAL-3171 resolve dataset for imported projects via... commit | commitdiff | tree | snapshot
2018-12-14 Jim ProcterJAL-3171 failing test for legacy projects and fixing... commit | commitdiff | tree | snapshot
2018-12-14 Jim ProcterJAL-3171 register existing dataset for new view commit | commitdiff | tree | snapshot
2018-12-14 Jim ProcterJAL-3171 failing test checking preservation of dataset commit | commitdiff | tree | snapshot
2018-12-10 gmungocJAL-1421 added type to List and Vector feature/JAL-3169cancelOverwrite commit | commitdiff | tree | snapshot
2018-12-10 gmungocJAL-3169 leave file browser open on Cancel in overwrite... commit | commitdiff | tree | snapshot
2018-12-06 gmungocJAL-1854 fix Checkstyle import violations commit | commitdiff | tree | snapshot
2018-12-06 gmungocJAL-1854 Checkstyle updated to 8.12 commit | commitdiff | tree | snapshot
2018-12-03 gmungocJAL-3063 Castor removed from codebase commit | commitdiff | tree | snapshot
2018-12-03 gmungocMerge branch 'feature/JAL-3063JAXB' into feature/JAL... commit | commitdiff | tree | snapshot
2018-11-30 gmungocJAL-2420 don't offer Reveal All over alignment panel bug/JAL-2420revealAllMenu commit | commitdiff | tree | snapshot
2018-11-30 gmungocJAL-3166 catch NPE if all sequences are hidden bug/JAL-3166npeAllRowsHidden commit | commitdiff | tree | snapshot
2018-11-29 gmungocJAL-3140 updated IntervalStore jar commit | commitdiff | tree | snapshot
2018-11-29 gmungocJAL-3140 named tagged version of intervalstore.jar commit | commitdiff | tree | snapshot
2018-11-29 gmungocJAL-3140 NCList now via IntervalStore library commit | commitdiff | tree | snapshot
2018-11-28 gmungocJAL-3164 redraw complement overview on hide columns bug/JAL-3164complementOverview commit | commitdiff | tree | snapshot
2018-11-28 gmungocJAL-3158 additional calls to reset 'selection changed... bug/JAL-3158selectionBroadcasts commit | commitdiff | tree | snapshot
2018-11-22 gmungocJAL-3161 limit tooltip and status updates to visible... bug/JAL-3161annotationTooltipRange commit | commitdiff | tree | snapshot
2018-11-20 Ben Soares.gitignore changes commit | commitdiff | tree | snapshot
2018-11-20 Jim ProcterJAL-3127 Sequence ID Colour and nominal spanish translation commit | commitdiff | tree | snapshot
2018-11-19 Jim ProcterJAL-3127 javadoc, don’t darken white when shading resid... commit | commitdiff | tree | snapshot
2018-11-19 Jim ProcterJAL-3156 JAL-3127 code tidy commit | commitdiff | tree | snapshot
2018-11-19 Jim ProcterJAL-3156 javadoc re JAL-3127 and FIXME to make Alignmen... commit | commitdiff | tree | snapshot
2018-11-19 Jim ProcterJAL-3127 drop redundant hidden representative sequences... commit | commitdiff | tree | snapshot
2018-11-19 Jim ProcterJAL-3127 JAL-2773 don’t need to call paintAlignment... commit | commitdiff | tree | snapshot
2018-11-19 Jim ProcterJAL-3127 tidier tree group colour -> view propagation commit | commitdiff | tree | snapshot
2018-11-19 gmungocJAL-3154 disable drag to reorder JTable columns bug/JAL-3154tableColumnDrag commit | commitdiff | tree | snapshot
2018-11-09 Jim ProcterJAL-3127 polished setColor after review commit | commitdiff | tree | snapshot
2018-11-08 gmungocJAL-1889 ignore Clover instrumentation in test (second... commit | commitdiff | tree | snapshot
2018-11-08 gmungocJAL-1889 unit test tweaks for running on server commit | commitdiff | tree | snapshot
2018-11-05 Ben SoaresJAL-3141 Slightly improved message and more thorough... commit | commitdiff | tree | snapshot
2018-11-05 Ben SoaresJAL-3141 couple of minor fixes for example files being... commit | commitdiff | tree | snapshot
2018-11-02 Ben SoaresJAL-3141 Tests now available and working, bringing... commit | commitdiff | tree | snapshot
2018-11-01 Ben SoaresJAL-3141 Preferences 'Backups' tab now fits. Moved... commit | commitdiff | tree | snapshot
2018-10-31 Ben SoaresJAL-3141 Preferences 'Backups' tab now working. Doesn... commit | commitdiff | tree | snapshot
2018-10-25 gmungocJAL-3143 unit tests updated for code changes! commit | commitdiff | tree | snapshot
2018-10-25 Ben SoaresJAL-3141 Ostensibly all backups working for alignment... commit | commitdiff | tree | snapshot
2018-10-25 gmungocJAL-3143 comma-delimited feature attributes for alleles, commit | commitdiff | tree | snapshot
2018-10-25 gmungocJAL-3143 fetch Ensembl(Genomes) features as JSON not GFF commit | commitdiff | tree | snapshot
2018-10-24 Ben SoaresJAL-3141 Code checkout. Not compiling. commit | commitdiff | tree | snapshot
2018-10-24 Ben SoaresJAL-3141 Code checkout. Not compiling. commit | commitdiff | tree | snapshot
2018-10-23 Ben SoaresBackupFilter and other unfinished business commit | commitdiff | tree | snapshot
2018-10-23 gmungocJAL-3139 check group visibility when removing 'redundan... bug/JAL-3139colocatedFeatures commit | commitdiff | tree | snapshot
2018-10-22 Ben SoaresJAL-3141 Taken the backing up code out of FileChooser... commit | commitdiff | tree | snapshot
2018-10-22 Ben SoaresJAL-3141 Taken the backing up code out of FileChooser... commit | commitdiff | tree | snapshot
2018-10-22 Ben SoaresJAL-3141 Tidying commit | commitdiff | tree | snapshot
2018-10-19 Ben SoaresJAL-3141 Backup files being created with default suffix... commit | commitdiff | tree | snapshot
2018-10-16 Jim ProcterJAL-3127 always look up sequence ID colour from view... commit | commitdiff | tree | snapshot
2018-10-16 Jim ProcterJAL-3127 tidy up terminology in colour schemes help... commit | commitdiff | tree | snapshot
2018-10-16 Jim ProcterJAL-3127 updated colours menu and tree view documentation commit | commitdiff | tree | snapshot
2018-10-16 Jim ProcterJAL-3127 reinstate ability to set sequence ID colour... commit | commitdiff | tree | snapshot
2018-10-16 Jim ProcterJAL-3127 use AlignViewportI.addGroup to create & propag... commit | commitdiff | tree | snapshot
2018-10-16 Jim ProcterJAL-3127 use AlignViewportI.addGroup() to add group... commit | commitdiff | tree | snapshot
2018-10-16 Jim Procterviewport flag to indicate when structure view needs... commit | commitdiff | tree | snapshot
2018-10-09 Jim ProcterJAL-3127 Colour sequences by ID - need to check that... commit | commitdiff | tree | snapshot
2018-10-09 Jim ProcterJAL-3127 TODO - resolve reference to Viewport for group... commit | commitdiff | tree | snapshot
2018-10-09 Jim ProcterJAL-3127 pass reference to AlignViewportI when creating... commit | commitdiff | tree | snapshot
2018-10-08 gmungocJAL-1244 comments, javadoc, method signature tweaks feature/JAL-1244stretchStatusMsg commit | commitdiff | tree | snapshot
2018-10-08 gmungocJAL-1244 editSequence extract method refactoring commit | commitdiff | tree | snapshot
2018-10-05 gmungocJAL-1244 improved status message for insert/delete gap commit | commitdiff | tree | snapshot
2018-10-04 gmungocJAL-3132 status message for sequence and/or graph group... commit | commitdiff | tree | snapshot
2018-10-04 gmungocJAL-1244 no status message (yet) for locked edit of... commit | commitdiff | tree | snapshot
2018-10-04 gmungocJAL-1244 status message for insert/delete gaps on singl... commit | commitdiff | tree | snapshot
2018-10-04 gmungocJAL-1244 status message while dragging a stretch group commit | commitdiff | tree | snapshot
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