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2016-11-23 gmungocMerge branch 'develop' into features/JAL-2295setChimera... commit | commitdiff | tree | snapshot
2016-11-22 Jim ProcterJAL-2197 changed tooltip for Jnet annotation rows to... commit | commitdiff | tree | snapshot
2016-11-22 tcofoegbuMerge branch 'bug/JAL-2277_refactorPrintUnwrapped'... commit | commitdiff | tree | snapshot
2016-11-22 Jim ProcterMerge branch 'features/JAL-2177_update_jmol_to_14.6... commit | commitdiff | tree | snapshot
2016-11-22 Jim ProcterJAL-2325 update release date for 2.10.1
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2016-11-22 Jim ProcterMerge branch 'develop' into documentation/JAL-2325_rele... commit | commitdiff | tree | snapshot
2016-11-22 gmungocJAL-2337 fix: only adjust once for scroll offset bug/JAL-2277_refactorPrintUnwrapped commit | commitdiff | tree | snapshot
2016-11-22 gmungocJAL-1919 JAL-2177 handle empty pdbentries list correctly features/JAL-2177_update_jmol_to_14.6.4_2016.10.26 commit | commitdiff | tree | snapshot
2016-11-22 Jim ProcterMerge branch 'develop' of source.jalview.org/git/jalvie... commit | commitdiff | tree | snapshot
2016-11-22 tcofoegbuMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2016-11-22 tcofoegbuJAL-2322 added runnable interface to HTMLOutput class... commit | commitdiff | tree | snapshot
2016-11-22 Jim ProcterMerge branch 'features/JAL-1738_JAL-345_selectionfromhi... commit | commitdiff | tree | snapshot
2016-11-22 Jim ProcterMerge branch 'develop' of source.jalview.org/git/jalvie... commit | commitdiff | tree | snapshot
2016-11-22 Jim ProcterJAL-1738 JAL-345 changed keystroke to ‘B’ (with modifie... commit | commitdiff | tree | snapshot
2016-11-22 gmungocJAL-2277 refactored AlignmentPanel.printUnwrapped to... commit | commitdiff | tree | snapshot
2016-11-21 tcofoegbuJAL-2277 bug fix for mis-alligned graphics output for... commit | commitdiff | tree | snapshot
2016-11-21 Jim ProcterJAL-2325 JAL-2118 2.10.0 patch in release note commit | commitdiff | tree | snapshot
2016-11-21 Jim ProcterJAL-2335 patched FeatureRendererModel.findFeaturesAtRes... bug/JAL-2323disulfideOverview commit | commitdiff | tree | snapshot
2016-11-21 Jim ProcterJAL-2335 failing test for FeatureRendererModel.findFeat... commit | commitdiff | tree | snapshot
2016-11-21 Jim ProcterMerge branch 'documentation/JAL-2325_release2101' into... commit | commitdiff | tree | snapshot
2016-11-21 Jim ProcterMerge branch 'develop' into documentation/JAL-2325_rele... commit | commitdiff | tree | snapshot
2016-11-21 Jim ProcterJAL-2284 documentation for the new command-line option commit | commitdiff | tree | snapshot
2016-11-21 Jim ProcterJAL-2325 post-document JAL-2284 released in 2.10.0 commit | commitdiff | tree | snapshot
2016-11-21 Jim ProcterJAL-2325 release notes for JAL-2317 commit | commitdiff | tree | snapshot
2016-11-21 tcofoegbuMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2016-11-21 tcofoegbuJAL-2332 bugfix to enable structure chooser opening... commit | commitdiff | tree | snapshot
2016-11-21 gmungocJAL-2333 test beefed up with gaps commit | commitdiff | tree | snapshot
2016-11-21 Jim ProcterJAL-1888 JAL-2325 release 2.9.0b1 notes updated post... commit | commitdiff | tree | snapshot
2016-11-21 gmungocJAL-2333 corrected select columns with 'contact' feature commit | commitdiff | tree | snapshot
2016-11-21 Jim ProcterMerge branch 'documentation/JAL-2325_release2101' into... commit | commitdiff | tree | snapshot
2016-11-21 Jim ProcterJAL-1723 release notes and note in documentation about... commit | commitdiff | tree | snapshot
2016-11-21 Jim ProcterJAL-2325 update release 2.10.0 release notes for JAL... commit | commitdiff | tree | snapshot
2016-11-21 gmungocMerge branch 'develop' into bug/JAL-2323disulfideOverview commit | commitdiff | tree | snapshot
2016-11-18 Jim ProcterMerge branch 'bug/JAL-98consensusMemory' into develop commit | commitdiff | tree | snapshot
2016-11-18 gmungocJAL-98 with the two types missing from last commit... bug/JAL-98consensusMemory commit | commitdiff | tree | snapshot
2016-11-17 gmungocJAL-2323 revert to thread-safe iteration over array... commit | commitdiff | tree | snapshot
2016-11-17 gmungocJAL-98 ProfilesI container for profiles for columns commit | commitdiff | tree | snapshot
2016-11-17 gmungocJAL-98 javadoc, third party acknowledgements (and very... commit | commitdiff | tree | snapshot
2016-11-17 gmungocJAL-2327 disulfide bond abstracted to SequenceFeature... commit | commitdiff | tree | snapshot
2016-11-17 gmungocJAL-2327 add isContactFeature commit | commitdiff | tree | snapshot
2016-11-16 Jim ProcterMerge branch 'features/JAL-1723_sequenceReport' into... commit | commitdiff | tree | snapshot
2016-11-16 gmungocJAL-2296 unit test for reading Chimera attributes to... commit | commitdiff | tree | snapshot
2016-11-16 Jim ProcterMerge branch 'develop' of source.jalview.org/git/jalvie... commit | commitdiff | tree | snapshot
2016-11-16 Jim ProcterMerge branch 'documentation/JAL-2325_release2101' into... commit | commitdiff | tree | snapshot
2016-11-16 Jim ProcterJAL-2325 release notes for 2.10.1 - pass one commit | commitdiff | tree | snapshot
2016-11-16 kiramtMerge remote-tracking branch 'origin/bug/JAL-2282'... commit | commitdiff | tree | snapshot
2016-11-16 kiramtJAL-2282 Updated docs with information about when warni... bug/JAL-2282 commit | commitdiff | tree | snapshot
2016-11-16 gmungocJAL-2323 render disulfide bond correctly on overview... commit | commitdiff | tree | snapshot
2016-11-16 tcofoegbuMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2016-11-16 tcofoegbuJAL-2322 JAL-2309 replaced references to isheadless... commit | commitdiff | tree | snapshot
2016-11-16 Jim ProcterJAL-2318 revised documentation for above PID Threshold commit | commitdiff | tree | snapshot
2016-11-16 gmungocMerge branch 'develop' into features/JAL-2295setChimera... commit | commitdiff | tree | snapshot
2016-11-16 gmungocJAL-2324 fix and tests for comparison of Float.NaN... commit | commitdiff | tree | snapshot
2016-11-16 gmungocJAL-2319 corrected reporting of SIFTS mapping commit | commitdiff | tree | snapshot
2016-11-16 gmungocMerge branch 'develop' into features/JAL-2295setChimera... commit | commitdiff | tree | snapshot
2016-11-16 Jim ProcterJAL-2177 remove signature from desktop library Jmol jar commit | commitdiff | tree | snapshot
2016-11-16 gmungocJAL-2296 don't copy attribute with value False commit | commitdiff | tree | snapshot
2016-11-16 gmungocJAL-2295 don't exclude RESNUM from transfer to Chimera commit | commitdiff | tree | snapshot
2016-11-14 tcofoegbuJAL-2322 Refactored unified architecture for data ... commit | commitdiff | tree | snapshot
2016-11-14 gmungocJAL-2296 new code and refactoring for 'copy Chimera... commit | commitdiff | tree | snapshot
2016-11-14 gmungocJAL-2295 don't copy 'Chimera' features back to Chimera commit | commitdiff | tree | snapshot
2016-11-14 gmungocJAL-2296 parse Chimera atomspec to AtomSpec commit | commitdiff | tree | snapshot
2016-11-14 gmungocJAL-2296 report whether SequenceFeature actually added... commit | commitdiff | tree | snapshot
2016-11-14 gmungocJAL-2295 JAL-2296 skeleton 'attributes to features... commit | commitdiff | tree | snapshot
2016-11-11 tcofoegbuJAL-2277 Refactored out duplicated method - printUnwrap... commit | commitdiff | tree | snapshot
2016-11-11 Jim ProcterJAL-2177 remove Jmol project signature from jar so... commit | commitdiff | tree | snapshot
2016-11-11 gmungocMerge branch 'develop' into features/JAL-2295setChimera... commit | commitdiff | tree | snapshot
2016-11-11 gmungocJAL-2295 tests now 'network-free' with local PDB and... commit | commitdiff | tree | snapshot
2016-11-11 gmungocJAL-2295 JAL-2269 JAL-2319 mockable SIFTS file, fix... commit | commitdiff | tree | snapshot
2016-11-11 gmungocJAL-2295 improved integrity of 'isFinishedInit' flag commit | commitdiff | tree | snapshot
2016-11-11 gmungocJAL-1270 corrected command-line args commit | commitdiff | tree | snapshot
2016-11-11 gmungocJAL-2295 set finishedInit to false before checking... commit | commitdiff | tree | snapshot
2016-11-11 gmungocJAL-2295 test that verifies transfer of features to... commit | commitdiff | tree | snapshot
2016-11-11 gmungocJAL-2295 sorted properties for readability commit | commitdiff | tree | snapshot
2016-11-11 gmungocJAL-2295 (optionally) return Chimera command reply commit | commitdiff | tree | snapshot
2016-11-11 gmungocJAL-2295 correct test for Float.isNaN(score) ! commit | commitdiff | tree | snapshot
2016-11-10 tcofoegbuMerge branch 'bug/JAL-2317_jmol_chimera-chain-factorisa... commit | commitdiff | tree | snapshot
2016-11-10 tcofoegbuMerge branch 'develop' into bug/JAL-2317_jmol_chimera... commit | commitdiff | tree | snapshot
2016-11-10 tcofoegbuMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2016-11-10 tcofoegbuJAL-2317 Fixed Chimera command for hiding/showing disti... bug/JAL-2317_jmol_chimera-chain-factorisation commit | commitdiff | tree | snapshot
2016-11-10 gmungocJAL-2295 additional tests, stronger sanitisation of... commit | commitdiff | tree | snapshot
2016-11-10 tcofoegbuBugfix to enable accurate chain extraction/association... commit | commitdiff | tree | snapshot
2016-11-10 gmungocJAL-2320 thread to close Chimera viewer panel if Chimer... features/JAL-2320_closeChimeraAction commit | commitdiff | tree | snapshot
2016-11-10 gmungocJAL-2320 added getViewer() method to return Chimera... commit | commitdiff | tree | snapshot
2016-11-09 gmungocJAL-2295 set attributes commands include feature value... commit | commitdiff | tree | snapshot
2016-11-09 gmungocJAL-2295 single constant for "RESNUM" feature name commit | commitdiff | tree | snapshot
2016-11-08 gmungocJAL-2295 JAL-1596 method to pass a command script file... commit | commitdiff | tree | snapshot
2016-11-08 gmungocJAL-2301 corrected search example to match AA propertie... commit | commitdiff | tree | snapshot
2016-11-08 gmungocJAL-2301 made T hydrophobic as per the cited conservati... commit | commitdiff | tree | snapshot
2016-11-08 gmungocJAL-1961 added link to GFF3 format as well as GFF2 commit | commitdiff | tree | snapshot
2016-11-08 gmungocJAL-2295 feature and colour commands refactored to... commit | commitdiff | tree | snapshot
2016-11-08 gmungocJAL-2295 method added to return a compact mapped range... commit | commitdiff | tree | snapshot
2016-11-08 kiramtJAL-2309 Made test timeout slightly longer bug/JAL-2309 commit | commitdiff | tree | snapshot
2016-11-08 kiramtJAL-2309 Adjusted timeout on headless tests commit | commitdiff | tree | snapshot
2016-11-08 gmungocJAL-2295 extracted AtomSpecModel for reuse in Chimera... commit | commitdiff | tree | snapshot
2016-11-08 gmungocJAL-2295 make RangeComparator a top level class for... commit | commitdiff | tree | snapshot
2016-11-08 tcofoegbuJAL-2280 Updated spanish translation as recommended... commit | commitdiff | tree | snapshot
2016-11-08 tcofoegbuJAL-2292 updated method calls commit | commitdiff | tree | snapshot
2016-11-08 tcofoegbuMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2016-11-08 tcofoegbuJAL-2292 renamed method and improved implementation... commit | commitdiff | tree | snapshot
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