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jalview.git
2012-09-19 jprocterJAL-1130 refactored standard hyperlink handler code... commit | commitdiff | tree | snapshot
2012-09-19 jprocterJAL-1130 trial view of new logo on splashscreen. commit | commitdiff | tree | snapshot
2012-09-19 jprocterJAL-1170 column and row positions confused in implement... commit | commitdiff | tree | snapshot
2012-09-07 jproctertodos commit | commitdiff | tree | snapshot
2012-09-06 jprocterJAL-1065 documentation and image commit | commitdiff | tree | snapshot
2012-09-06 jprocterJAL-958 commit | commitdiff | tree | snapshot
2012-09-06 jprocterJAL-842 documentation commit | commitdiff | tree | snapshot
2012-09-06 jprocter2.7.1 squashed commit | commitdiff | tree | snapshot
2012-09-06 jproctertypo commit | commitdiff | tree | snapshot
2012-09-06 jprocterJAL-1065 whats new entry for tcoffee scores commit | commitdiff | tree | snapshot
2012-09-06 jprocterfix image link commit | commitdiff | tree | snapshot
2012-09-06 jprocterJAL-958 documented logo menu items commit | commitdiff | tree | snapshot
2012-09-06 jproctermerge new 2.7.1 and 2.8 features into one commit | commitdiff | tree | snapshot
2012-09-06 jproctertypo commit | commitdiff | tree | snapshot
2012-09-06 jprocterJAL-958 flag indicating if visualization settings for... commit | commitdiff | tree | snapshot
2012-09-06 jprocterJAL-958 store/recover normalised flag commit | commitdiff | tree | snapshot
2012-09-06 jprocterJAL-958 store normalised flag in jalview project commit | commitdiff | tree | snapshot
2012-09-06 jprocterPCA what's new and score matrix documentation page commit | commitdiff | tree | snapshot
2012-09-06 jprocterJAL-1013 JAL-1167 JAL-1121 JAL-1125 commit | commitdiff | tree | snapshot
2012-09-06 jprocterJAL-1027 JAL-1167 documentation and patched DNA/RNA... commit | commitdiff | tree | snapshot
2012-09-06 jprocterJAL-1013 - employ index parameter rather than hardcode... commit | commitdiff | tree | snapshot
2012-09-06 jprocterJAL-1167 method and simple tests for printing score... commit | commitdiff | tree | snapshot
2012-09-05 jprocterJAL-979 tidy up shmmr hardcoded WS definition commit | commitdiff | tree | snapshot
2012-09-05 jprocterJAL-1136 give pre-existing custom settings a special... commit | commitdiff | tree | snapshot
2012-09-05 jprocterformatting commit | commitdiff | tree | snapshot
2012-09-05 jprocterpatch for NPE when no services are available to resolve... commit | commitdiff | tree | snapshot
2012-09-05 jprocterJAL-975 null any existing preset if user has supplied... commit | commitdiff | tree | snapshot
2012-09-05 jprocterJAL-1162 catch security exception and just use bare... commit | commitdiff | tree | snapshot
2012-09-05 jprocterJAL-994 fix when sequence is too short and no jobs run commit | commitdiff | tree | snapshot
2012-09-05 jprocterJAL-1111 allow news reader window to be moved even... commit | commitdiff | tree | snapshot
2012-09-05 jprocterJAL-976 fix AACon name typo in source and GUI commit | commitdiff | tree | snapshot
2012-09-04 jproctertypo commit | commitdiff | tree | snapshot
2012-09-04 jprocterJAL-976 documentation for disorder, AACon, ClustalO... commit | commitdiff | tree | snapshot
2012-09-04 jprocterJAL-975 note about black colouring bug commit | commitdiff | tree | snapshot
2012-09-04 jprocterJAL-1066 documentation for per-sequence annotation... commit | commitdiff | tree | snapshot
2012-09-04 jprocterJAL-1060 new dialog box image commit | commitdiff | tree | snapshot
2012-09-04 jprocterJAL-1060 documentation for new layout commit | commitdiff | tree | snapshot
2012-09-04 jprocteroff by one for sequence associated annotation commit | commitdiff | tree | snapshot
2012-09-04 jprocterunused variable commit | commitdiff | tree | snapshot
2012-09-04 jprocterJAL-974 JRonn thresholds commit | commitdiff | tree | snapshot
2012-09-03 jprocterJAL-591 adapt option layout to width of dialog box commit | commitdiff | tree | snapshot
2012-09-03 jprocterJAL-975 JAL-974 JAL-976 always adjust height after... commit | commitdiff | tree | snapshot
2012-09-03 jprocterJAL-974 show thresholds for disorder predictor annotati... commit | commitdiff | tree | snapshot
2012-09-03 jprocterJAL-1153 ensure _linecolour is copied in copy constructor commit | commitdiff | tree | snapshot
2012-09-03 jprocterJAL-1111 news reader shouldn't be modal. commit | commitdiff | tree | snapshot
2012-09-03 jprocterJAL-1111 doh - helps if you pass modality flag onto... commit | commitdiff | tree | snapshot
2012-09-02 jprocterJAL-812 only trigger alignment redraw and calculation... commit | commitdiff | tree | snapshot
2012-09-02 jprocterJAL-1007 refactored code and patched calculation bug commit | commitdiff | tree | snapshot
2012-09-02 jprocterJAL-1015 documentation for basic HTML sequence annotati... commit | commitdiff | tree | snapshot
2012-09-02 jprocterJAL-1075 JAL-1062 documentation and new figure for... commit | commitdiff | tree | snapshot
2012-09-02 jprocterJAL-1158 - request focus after opening window. commit | commitdiff | tree | snapshot
2012-09-02 jprocterJAL-659 cope with case insensitive accessions by forcin... commit | commitdiff | tree | snapshot
2012-09-02 jprocterJAL-1062 JAL-659 correct start position for retrieved... commit | commitdiff | tree | snapshot
2012-09-02 jprocterJAL-1062 use matching region or first section of sequen... commit | commitdiff | tree | snapshot
2012-09-01 jprocterJAL-1075 sort nodes alphabetically commit | commitdiff | tree | snapshot
2012-09-01 jprocterJAL-1160 support horizontal mouse wheel scrolling events commit | commitdiff | tree | snapshot
2012-09-01 jprocterJAL-1161 JAL-1160 implement custom mousewheel listener... commit | commitdiff | tree | snapshot
2012-09-01 jprocterjavadoc commit | commitdiff | tree | snapshot
2012-08-31 jprocterJAL-1015 equivalent menu items for applet - not visible... commit | commitdiff | tree | snapshot
2012-08-31 jprocterJAL-1015 new menu items in desktop popup menu for creat... commit | commitdiff | tree | snapshot
2012-08-31 jprocterJAL-1015 resolve dataset sequence before searching... commit | commitdiff | tree | snapshot
2012-08-31 jprocterJAL-1157 new window for displaying HTML formatted text... commit | commitdiff | tree | snapshot
2012-08-31 jprocterJAL-1015 refactor tooltip html generation code to jalvi... commit | commitdiff | tree | snapshot
2012-08-31 jprocterJAL-974 - ensure annotation created in local sequence... commit | commitdiff | tree | snapshot
2012-08-31 jprocterJAL-1064 patch for NPE when registerd database names... commit | commitdiff | tree | snapshot
2012-08-29 jprocterJAL-1155 fix panel length calculation for grouped graph... commit | commitdiff | tree | snapshot
2012-08-29 jprocterJAL-1066 limit available rows to per-sequence when... commit | commitdiff | tree | snapshot
2012-08-29 jprocterJAL-974 skip empty rows commit | commitdiff | tree | snapshot
2012-08-29 jprocterJAL-974 set GlobPlot raw/smooth score annotation rows... commit | commitdiff | tree | snapshot
2012-08-29 jprocterformatting commit | commitdiff | tree | snapshot
2012-08-29 jprocterJAL-1153 JAL-1155 improved layout and allowed labels... commit | commitdiff | tree | snapshot
2012-08-29 jprocterJAL-1153 new runtime property set to first non-null... commit | commitdiff | tree | snapshot
2012-08-29 jprocterJAL-48 patch NPE when encountering an alignment window... commit | commitdiff | tree | snapshot
2012-08-28 jprocterremove contaminant imports commit | commitdiff | tree | snapshot
2012-08-28 jprocterremove contaminant imports commit | commitdiff | tree | snapshot
2012-08-28 jprocterJAL-676 JAL-1001 - simple menu item to access documenta... commit | commitdiff | tree | snapshot
2012-08-28 jprocterformatting commit | commitdiff | tree | snapshot
2012-08-28 jprocterJAL-1066 basic gui and functionality for per-sequence... commit | commitdiff | tree | snapshot
2012-08-28 jprocterJAL-1066 - per-sequence colouring with sequence associa... commit | commitdiff | tree | snapshot
2012-08-28 jprocterformatting commit | commitdiff | tree | snapshot
2012-08-28 jprocterJAL-1145 patch: sequence associated annotation with... commit | commitdiff | tree | snapshot
2012-08-28 jprocterJAL-974 create mixture of sequence features marking... commit | commitdiff | tree | snapshot
2012-08-28 jprocterJAL-974 refactored creation of Annotation rows from... commit | commitdiff | tree | snapshot
2012-08-28 jprocterJAL-974 JAL-975 try to cope with temporary server error... commit | commitdiff | tree | snapshot
2012-08-28 jprocterJAL-1136 sometimes there are no parameters associated... commit | commitdiff | tree | snapshot
2012-08-28 jprocterJAL-1001 - hack to extract the global URL for a service... commit | commitdiff | tree | snapshot
2012-08-28 jprocterjavadoc and note about broken semantics for findIndex commit | commitdiff | tree | snapshot
2012-08-28 jprocterJAL-1149 patch commit | commitdiff | tree | snapshot
2012-08-28 jprocterJAL-1148 reinstate sequence references for annotation... commit | commitdiff | tree | snapshot
2012-08-24 jprocterJAL-1087 skip processing any of the other command line... commit | commitdiff | tree | snapshot
2012-08-24 jprocterJAL-1143 - ensure we revalidate annotation panel height... commit | commitdiff | tree | snapshot
2012-08-23 jprocterJAL-975 JAL-951 test class for viewing layout for JABAW... commit | commitdiff | tree | snapshot
2012-08-07 jprocterJAL-1137 clean up old-style menu code and look commit | commitdiff | tree | snapshot
2012-08-07 jprocterJAL-1137 JAL-975 simpler menu for the AACon service... commit | commitdiff | tree | snapshot
2012-08-07 jprocterDebug message associated with TODO for JAL-1136 - re... commit | commitdiff | tree | snapshot
2012-08-07 jprocterJAL-975 JAL-1137 debug messages for web service client... commit | commitdiff | tree | snapshot
2012-08-05 jprocterJAL-1131 - todos for later versions commit | commitdiff | tree | snapshot
2012-08-05 jprocterJAL-1131 ensure new dataset sequence is created if... commit | commitdiff | tree | snapshot
2012-08-03 jprocterJAL-1136 Ensure asynchronously calculated autoannotatio... commit | commitdiff | tree | snapshot
2012-08-03 jprocterJAL-1136 JAL-811 JAL-812 store/recover autocalc alignme... commit | commitdiff | tree | snapshot
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