source.jalview.org Git - jalview.git/tree

drwxr-xr-x		..
-rwxr-xr-x	1075	ASequence.java	blob \| history \| raw
-rwxr-xr-x	1039	ASequenceI.java	blob \| history \| raw
-rw-r--r--	2652	AlignExportSettingsAdapter.java	blob \| history \| raw
-rw-r--r--	3202	AlignedCodon.java	blob \| history \| raw
-rw-r--r--	24822	AlignedCodonFrame.java	blob \| history \| raw
-rwxr-xr-x	49516	Alignment.java	blob \| history \| raw
-rwxr-xr-x	47529	AlignmentAnnotation.java	blob \| history \| raw
-rw-r--r--	1676	AlignmentExportData.java	blob \| history \| raw
-rwxr-xr-x	17409	AlignmentI.java	blob \| history \| raw
-rwxr-xr-x	7288	AlignmentOrder.java	blob \| history \| raw
-rw-r--r--	36825	AlignmentView.java	blob \| history \| raw
-rw-r--r--	1503	AllColsCollection.java	blob \| history \| raw
-rw-r--r--	1724	AllColsIterator.java	blob \| history \| raw
-rw-r--r--	1669	AllRowsCollection.java	blob \| history \| raw
-rw-r--r--	1756	AllRowsIterator.java	blob \| history \| raw
-rw-r--r--	2094	AnnotatedCollectionI.java	blob \| history \| raw
-rwxr-xr-x	5572	Annotation.java	blob \| history \| raw
-rwxr-xr-x	6928	BinaryNode.java	blob \| history \| raw
-rwxr-xr-x	4277	BinarySequence.java	blob \| history \| raw
-rw-r--r--	10986	CigarArray.java	blob \| history \| raw
-rw-r--r--	19850	CigarBase.java	blob \| history \| raw
-rw-r--r--	1696	CigarCigar.java	blob \| history \| raw
-rw-r--r--	1172	CigarSimple.java	blob \| history \| raw
-rw-r--r--	20720	ColumnSelection.java	blob \| history \| raw
-rw-r--r--	1288	ContactListI.java	blob \| history \| raw
-rw-r--r--	3202	ContactListImpl.java	blob \| history \| raw
-rw-r--r--	1924	ContactListProviderI.java	blob \| history \| raw
-rw-r--r--	2815	ContactMapHolder.java	blob \| history \| raw
-rw-r--r--	781	ContactMapHolderI.java	blob \| history \| raw
-rw-r--r--	5498	ContactMatrix.java	blob \| history \| raw
-rw-r--r--	5516	ContactMatrixI.java	blob \| history \| raw
-rw-r--r--	3187	ContactRange.java	blob \| history \| raw
-rw-r--r--	1002	ContiguousI.java	blob \| history \| raw
-rwxr-xr-x	11141	DBRefEntry.java	blob \| history \| raw
-rwxr-xr-x	5708	DBRefSource.java	blob \| history \| raw
-rw-r--r--	2124	FeatureProperties.java	blob \| history \| raw
-rw-r--r--	3108	FloatContactMatrix.java	blob \| history \| raw
-rw-r--r--	1548	GeneLociI.java	blob \| history \| raw
-rw-r--r--	2994	GeneLocus.java	blob \| history \| raw
-rwxr-xr-x	2069	GraphLine.java	blob \| history \| raw
-rw-r--r--	5462	GroupSet.java	blob \| history \| raw
-rw-r--r--	358	GroupSetHolder.java	blob \| history \| raw
-rw-r--r--	1450	GroupSetI.java	blob \| history \| raw
-rw-r--r--	29975	HiddenColumns.java	blob \| history \| raw
-rw-r--r--	6489	HiddenColumnsCursor.java	blob \| history \| raw
-rw-r--r--	1344	HiddenCursorPosition.java	blob \| history \| raw
-rwxr-xr-x	10429	HiddenSequences.java	blob \| history \| raw
-rw-r--r--	1107	IncompleteCodonException.java	blob \| history \| raw
-rw-r--r--	9387	MappedFeatures.java	blob \| history \| raw
-rw-r--r--	16835	Mapping.java	blob \| history \| raw
-rw-r--r--	1911	MappingType.java	blob \| history \| raw
-rw-r--r--	999	NodeTransformI.java	blob \| history \| raw
-rwxr-xr-x	14512	PDBEntry.java	blob \| history \| raw
-rw-r--r--	2191	Point.java	blob \| history \| raw
-rw-r--r--	3645	Profile.java	blob \| history \| raw
-rw-r--r--	2370	ProfileI.java	blob \| history \| raw
-rw-r--r--	1618	Profiles.java	blob \| history \| raw
-rw-r--r--	997	ProfilesI.java	blob \| history \| raw
-rwxr-xr-x	1426	Provenance.java	blob \| history \| raw
-rwxr-xr-x	1331	ProvenanceEntry.java	blob \| history \| raw
-rw-r--r--	1621	Range.java	blob \| history \| raw
-rw-r--r--	2490	RangeElementsIterator.java	blob \| history \| raw
-rw-r--r--	3461	RangeIterator.java	blob \| history \| raw
-rw-r--r--	14677	ResidueCount.java	blob \| history \| raw
-rw-r--r--	1677	RnaViewerModel.java	blob \| history \| raw
-rw-r--r--	1985	SearchResultMatchI.java	blob \| history \| raw
-rwxr-xr-x	12072	SearchResults.java	blob \| history \| raw
-rw-r--r--	4125	SearchResultsI.java	blob \| history \| raw
-rw-r--r--	1502	SecondaryStructureAnnotation.java	blob \| history \| raw
-rw-r--r--	18643	SeqCigar.java	blob \| history \| raw
-rw-r--r--	3305	SeqDistanceContactMatrix.java	blob \| history \| raw
-rwxr-xr-x	51679	Sequence.java	blob \| history \| raw
-rw-r--r--	2373	SequenceCollectionI.java	blob \| history \| raw
-rw-r--r--	4251	SequenceCursor.java	blob \| history \| raw
-rw-r--r--	1771	SequenceDummy.java	blob \| history \| raw
-rwxr-xr-x	18642	SequenceFeature.java	blob \| history \| raw
-rwxr-xr-x	35179	SequenceGroup.java	blob \| history \| raw
-rwxr-xr-x	16727	SequenceI.java	blob \| history \| raw
-rwxr-xr-x	2563	SequenceNode.java	blob \| history \| raw
-rwxr-xr-x	2362	SequencePoint.java	blob \| history \| raw
-rw-r--r--	4056	StartRegionIterator.java	blob \| history \| raw
-rw-r--r--	4401	StructureViewerModel.java	blob \| history \| raw
-rw-r--r--	1461	VisibleColsCollection.java	blob \| history \| raw
-rw-r--r--	2907	VisibleContigsIterator.java	blob \| history \| raw
-rw-r--r--	1584	VisibleRowsCollection.java	blob \| history \| raw
-rw-r--r--	2335	VisibleRowsIterator.java	blob \| history \| raw
drwxr-xr-x	-	annotations	tree \| history
drwxr-xr-x	-	features	tree \| history