JAL-1807 includes ?j2sdebug flag and DebugJS._(msg)

[jalviewjs.git] / bin / jalview / datamodel / DBRefSource.js

diff --git a/bin/jalview/datamodel/DBRefSource.js b/bin/jalview/datamodel/DBRefSource.js
index 587f6f3..00d7337 100644 (file)
--- a/bin/jalview/datamodel/DBRefSource.js
+++ b/bin/jalview/datamodel/DBRefSource.js
@@ -1,29 +1,29 @@
-Clazz.declarePackage ("jalview.datamodel");\r
-c$ = Clazz.declareType (jalview.datamodel, "DBRefSource");\r
-Clazz.defineStatics (c$,\r
-"UNIPROT", "UNIPROT");\r
-c$.UP_NAME = c$.prototype.UP_NAME = "UNIPROT_NAME".toUpperCase ();\r
-c$.UNIPROTKB = c$.prototype.UNIPROTKB = "UniProtKB/TrEMBL".toUpperCase ();\r
-c$.EMBLCDSProduct = c$.prototype.EMBLCDSProduct = "EMBLCDSProtein".toUpperCase ();\r
-Clazz.defineStatics (c$,\r
-"PDB", "PDB",\r
-"EMBL", "EMBL",\r
-"EMBLCDS", "EMBLCDS",\r
-"PFAM", "PFAM",\r
-"RFAM", "RFAM");\r
-c$.GENEDB = c$.prototype.GENEDB = "GeneDB".toUpperCase ();\r
-c$.DNACODINGDBS = c$.prototype.DNACODINGDBS =  Clazz.newArray (-1, [jalview.datamodel.DBRefSource.EMBL, jalview.datamodel.DBRefSource.EMBLCDS, jalview.datamodel.DBRefSource.GENEDB]);\r
-c$.CODINGDBS = c$.prototype.CODINGDBS =  Clazz.newArray (-1, [jalview.datamodel.DBRefSource.EMBLCDS, jalview.datamodel.DBRefSource.GENEDB]);\r
-c$.PROTEINDBS = c$.prototype.PROTEINDBS =  Clazz.newArray (-1, [jalview.datamodel.DBRefSource.UNIPROT, jalview.datamodel.DBRefSource.PDB, jalview.datamodel.DBRefSource.UNIPROTKB, jalview.datamodel.DBRefSource.EMBLCDSProduct]);\r
-c$.PROTEINSEQ = c$.prototype.PROTEINSEQ =  Clazz.newArray (-1, [jalview.datamodel.DBRefSource.UNIPROT, jalview.datamodel.DBRefSource.UNIPROTKB, jalview.datamodel.DBRefSource.EMBLCDSProduct]);\r
-c$.PROTEINSTR = c$.prototype.PROTEINSTR =  Clazz.newArray (-1, [jalview.datamodel.DBRefSource.PDB]);\r
-c$.DOMAINDBS = c$.prototype.DOMAINDBS =  Clazz.newArray (-1, [jalview.datamodel.DBRefSource.PFAM, jalview.datamodel.DBRefSource.RFAM]);\r
-Clazz.defineStatics (c$,\r
-"SEQDB", "SQ",\r
-"DNASEQDB", "NASQ",\r
-"PROTSEQDB", "PROTSQ",\r
-"CODINGSEQDB", "CODING",\r
-"DNACODINGSEQDB", "XONCODING",\r
-"DOMAINDB", "DOMAIN",\r
-"MULTIACC", "MULTIACC",\r
-"ALIGNMENTDB", "ALIGNMENTS");\r
+Clazz.declarePackage ("jalview.datamodel");
+c$ = Clazz.declareType (jalview.datamodel, "DBRefSource");
+Clazz.defineStatics (c$,
+"UNIPROT", "UNIPROT");
+c$.UP_NAME = c$.prototype.UP_NAME = "UNIPROT_NAME".toUpperCase ();
+c$.UNIPROTKB = c$.prototype.UNIPROTKB = "UniProtKB/TrEMBL".toUpperCase ();
+c$.EMBLCDSProduct = c$.prototype.EMBLCDSProduct = "EMBLCDSProtein".toUpperCase ();
+Clazz.defineStatics (c$,
+"PDB", "PDB",
+"EMBL", "EMBL",
+"EMBLCDS", "EMBLCDS",
+"PFAM", "PFAM",
+"RFAM", "RFAM");
+c$.GENEDB = c$.prototype.GENEDB = "GeneDB".toUpperCase ();
+c$.DNACODINGDBS = c$.prototype.DNACODINGDBS =  Clazz.newArray (-1, [jalview.datamodel.DBRefSource.EMBL, jalview.datamodel.DBRefSource.EMBLCDS, jalview.datamodel.DBRefSource.GENEDB]);
+c$.CODINGDBS = c$.prototype.CODINGDBS =  Clazz.newArray (-1, [jalview.datamodel.DBRefSource.EMBLCDS, jalview.datamodel.DBRefSource.GENEDB]);
+c$.PROTEINDBS = c$.prototype.PROTEINDBS =  Clazz.newArray (-1, [jalview.datamodel.DBRefSource.UNIPROT, jalview.datamodel.DBRefSource.PDB, jalview.datamodel.DBRefSource.UNIPROTKB, jalview.datamodel.DBRefSource.EMBLCDSProduct]);
+c$.PROTEINSEQ = c$.prototype.PROTEINSEQ =  Clazz.newArray (-1, [jalview.datamodel.DBRefSource.UNIPROT, jalview.datamodel.DBRefSource.UNIPROTKB, jalview.datamodel.DBRefSource.EMBLCDSProduct]);
+c$.PROTEINSTR = c$.prototype.PROTEINSTR =  Clazz.newArray (-1, [jalview.datamodel.DBRefSource.PDB]);
+c$.DOMAINDBS = c$.prototype.DOMAINDBS =  Clazz.newArray (-1, [jalview.datamodel.DBRefSource.PFAM, jalview.datamodel.DBRefSource.RFAM]);
+Clazz.defineStatics (c$,
+"SEQDB", "SQ",
+"DNASEQDB", "NASQ",
+"PROTSEQDB", "PROTSQ",
+"CODINGSEQDB", "CODING",
+"DNACODINGSEQDB", "XONCODING",
+"DOMAINDB", "DOMAIN",
+"MULTIACC", "MULTIACC",
+"ALIGNMENTDB", "ALIGNMENTS");