-Clazz.declarePackage ("jalview.viewmodel.styles");\r
-Clazz.load (["jalview.api.ViewStyleI", "java.awt.Color"], "jalview.viewmodel.styles.ViewStyle", ["java.lang.Boolean"], function () {\r
-c$ = Clazz.decorateAsClass (function () {\r
-this.abovePIDThreshold = false;\r
-this.charHeight = 0;\r
-this.charWidth = 0;\r
-this.idWidth = -1;\r
-this.colourAppliesToAllGroups = false;\r
-this.centreColumnLabels = false;\r
-this.showdbrefs = false;\r
-this.shownpfeats = false;\r
-this.colourByReferenceSeq = false;\r
-this.conservationColourSelected = false;\r
-this.displayReferenceSeq = false;\r
-this.increment = 0;\r
-this.renderGaps = true;\r
-this.rightAlignIds = false;\r
-this.scaleAboveWrapped = false;\r
-this.scaleLeftWrapped = true;\r
-this.scaleRightWrapped = true;\r
-this.seqNameItalics = false;\r
-this.showAnnotation = true;\r
-this.showBoxes = true;\r
-this.showColourText = false;\r
-this.showHiddenMarkers = true;\r
-this.showJVSuffix = true;\r
-this.showSeqFeaturesHeight = false;\r
-this.showSequenceFeatures = false;\r
-this.showText = true;\r
-this.showUnconserved = false;\r
-this.textColour = null;\r
-this.textColour2 = null;\r
-this.threshold = 0;\r
-this.thresholdTextColour = 0;\r
-this.upperCasebold = false;\r
-this.fontName = null;\r
-this.fontSize = 0;\r
-this.scaleProteinAsCdna = true;\r
-this.wrapAlignment = false;\r
-this.wrappedWidth = 0;\r
-this.fontStyle = 0;\r
-Clazz.instantialize (this, arguments);\r
-}, jalview.viewmodel.styles, "ViewStyle", null, jalview.api.ViewStyleI);\r
-Clazz.prepareFields (c$, function () {\r
-this.textColour = java.awt.Color.black;\r
-this.textColour2 = java.awt.Color.white;\r
-});\r
-Clazz.makeConstructor (c$, \r
-function (vs) {\r
-this.setAbovePIDThreshold (vs.getAbovePIDThreshold ());\r
-this.setCentreColumnLabels (vs.isCentreColumnLabels ());\r
-this.setCharHeight (vs.getCharHeight ());\r
-this.setCharWidth (vs.getCharWidth ());\r
-this.setColourAppliesToAllGroups (vs.getColourAppliesToAllGroups ());\r
-this.setColourByReferenceSeq (vs.isColourByReferenceSeq ());\r
-this.setColourText (vs.getColourText ());\r
-this.setConservationColourSelected (vs.isConservationColourSelected ());\r
-this.setConservationSelected (vs.getConservationSelected ());\r
-this.setDisplayReferenceSeq (vs.isDisplayReferenceSeq ());\r
-this.setFontName (vs.getFontName ());\r
-this.setFontSize (vs.getFontSize ());\r
-this.setFontStyle (vs.getFontStyle ());\r
-this.setIdWidth (vs.getIdWidth ());\r
-this.setIncrement (vs.getIncrement ());\r
-this.setRenderGaps (vs.isRenderGaps ());\r
-this.setRightAlignIds (vs.isRightAlignIds ());\r
-this.setScaleAboveWrapped (vs.getScaleAboveWrapped ());\r
-this.setScaleLeftWrapped (vs.getScaleLeftWrapped ());\r
-this.setScaleProteinAsCdna (vs.isScaleProteinAsCdna ());\r
-this.setScaleRightWrapped (vs.getScaleRightWrapped ());\r
-this.setSeqNameItalics (vs.isSeqNameItalics ());\r
-this.setShowAnnotation (vs.isShowAnnotation ());\r
-this.setShowBoxes (vs.getShowBoxes ());\r
-this.setShowColourText (vs.isShowColourText ());\r
-this.setShowDBRefs (vs.isShowDBRefs ());\r
-this.setShowHiddenMarkers (vs.getShowHiddenMarkers ());\r
-this.setShowJVSuffix (vs.getShowJVSuffix ());\r
-this.setShowNPFeats (vs.isShowNPFeats ());\r
-this.setShowSequenceFeaturesHeight (vs.isShowSequenceFeaturesHeight ());\r
-this.setShowSequenceFeatures (vs.isShowSequenceFeatures ());\r
-this.setShowText (vs.getShowText ());\r
-this.setShowUnconserved (vs.getShowUnconserved ());\r
-this.setTextColour (vs.getTextColour ());\r
-this.setTextColour2 (vs.getTextColour2 ());\r
-this.setThreshold (vs.getThreshold ());\r
-this.setThresholdTextColour (vs.getThresholdTextColour ());\r
-this.setUpperCasebold (vs.isUpperCasebold ());\r
-this.setWrapAlignment (vs.getWrapAlignment ());\r
-this.setWrappedWidth (vs.getWrappedWidth ());\r
-}, "jalview.api.ViewStyleI");\r
-Clazz.makeConstructor (c$, \r
-function () {\r
-});\r
-Clazz.overrideMethod (c$, "equals", \r
-function (other) {\r
-if (other == null || !(Clazz.instanceOf (other, jalview.viewmodel.styles.ViewStyle))) {\r
-return false;\r
-}var vs = other;\r
-var match = (this.getAbovePIDThreshold () == vs.getAbovePIDThreshold () && this.isCentreColumnLabels () == vs.isCentreColumnLabels () && this.getCharHeight () == vs.getCharHeight () && this.getCharWidth () == vs.getCharWidth () && this.getColourAppliesToAllGroups () == vs.getColourAppliesToAllGroups () && this.isColourByReferenceSeq () == vs.isColourByReferenceSeq () && this.getColourText () == vs.getColourText () && this.isConservationColourSelected () == vs.isConservationColourSelected () && this.getConservationSelected () == vs.getConservationSelected () && this.isDisplayReferenceSeq () == vs.isDisplayReferenceSeq () && this.getFontSize () == vs.getFontSize () && this.getFontStyle () == vs.getFontStyle () && this.getIdWidth () == vs.getIdWidth () && this.getIncrement () == vs.getIncrement () && this.isRenderGaps () == vs.isRenderGaps () && this.isRightAlignIds () == vs.isRightAlignIds () && this.getScaleAboveWrapped () == vs.getScaleAboveWrapped () && this.getScaleLeftWrapped () == vs.getScaleLeftWrapped () && this.isScaleProteinAsCdna () == vs.isScaleProteinAsCdna () && this.getScaleRightWrapped () == vs.getScaleRightWrapped () && this.isSeqNameItalics () == vs.isSeqNameItalics () && this.isShowAnnotation () == vs.isShowAnnotation () && this.getShowBoxes () == vs.getShowBoxes () && this.isShowColourText () == vs.isShowColourText () && this.isShowDBRefs () == vs.isShowDBRefs () && this.getShowHiddenMarkers () == vs.getShowHiddenMarkers () && this.getShowJVSuffix () == vs.getShowJVSuffix () && this.isShowNPFeats () == vs.isShowNPFeats () && this.isShowSequenceFeaturesHeight () == vs.isShowSequenceFeaturesHeight () && this.isShowSequenceFeatures () == vs.isShowSequenceFeatures () && this.getShowText () == vs.getShowText () && this.getShowUnconserved () == vs.getShowUnconserved () && this.getThreshold () == vs.getThreshold () && this.getThresholdTextColour () == vs.getThresholdTextColour () && this.isUpperCasebold () == vs.isUpperCasebold () && this.getWrapAlignment () == vs.getWrapAlignment () && this.getWrappedWidth () == vs.getWrappedWidth ());\r
-match = match && String.valueOf (this.getFontName ()).equals (String.valueOf (vs.getFontName ()));\r
-match = match && String.valueOf (this.getTextColour ()).equals (String.valueOf (vs.getTextColour ()));\r
-match = match && String.valueOf (this.getTextColour2 ()).equals (String.valueOf (vs.getTextColour2 ()));\r
-return match;\r
-}, "~O");\r
-Clazz.overrideMethod (c$, "hashCode", \r
-function () {\r
-var hash = 0;\r
-var m = 1;\r
-hash += m++ * Boolean.$valueOf (this.abovePIDThreshold).hashCode ();\r
-hash += m++ * Boolean.$valueOf (this.centreColumnLabels).hashCode ();\r
-hash += m++ * Boolean.$valueOf (this.colourAppliesToAllGroups).hashCode ();\r
-hash += m++ * Boolean.$valueOf (this.displayReferenceSeq).hashCode ();\r
-hash += m++ * Boolean.$valueOf (this.renderGaps).hashCode ();\r
-hash += m++ * Boolean.$valueOf (this.rightAlignIds).hashCode ();\r
-hash += m++ * Boolean.$valueOf (this.scaleProteinAsCdna).hashCode ();\r
-hash += m++ * Boolean.$valueOf (this.scaleRightWrapped).hashCode ();\r
-hash += m++ * Boolean.$valueOf (this.seqNameItalics).hashCode ();\r
-hash += m++ * Boolean.$valueOf (this.showAnnotation).hashCode ();\r
-hash += m++ * Boolean.$valueOf (this.showBoxes).hashCode ();\r
-hash += m++ * Boolean.$valueOf (this.showdbrefs).hashCode ();\r
-hash += m++ * Boolean.$valueOf (this.showJVSuffix).hashCode ();\r
-hash += m++ * Boolean.$valueOf (this.showSequenceFeatures).hashCode ();\r
-hash += m++ * Boolean.$valueOf (this.showUnconserved).hashCode ();\r
-hash += m++ * Boolean.$valueOf (this.wrapAlignment).hashCode ();\r
-hash += m++ * this.charHeight;\r
-hash += m++ * this.charWidth;\r
-hash += m++ * this.fontSize;\r
-hash += m++ * this.fontStyle;\r
-hash += m++ * this.idWidth;\r
-hash += String.valueOf (this.fontName).hashCode ();\r
-return hash;\r
-});\r
-Clazz.defineMethod (c$, "isUpperCasebold", \r
-function () {\r
-return this.upperCasebold;\r
-});\r
-Clazz.overrideMethod (c$, "setUpperCasebold", \r
-function (upperCasebold) {\r
-this.upperCasebold = upperCasebold;\r
-}, "~B");\r
-Clazz.defineMethod (c$, "getAbovePIDThreshold", \r
-function () {\r
-return this.abovePIDThreshold;\r
-});\r
-Clazz.defineMethod (c$, "getCharHeight", \r
-function () {\r
-return this.charHeight;\r
-});\r
-Clazz.defineMethod (c$, "getCharWidth", \r
-function () {\r
-return this.charWidth;\r
-});\r
-Clazz.defineMethod (c$, "getColourAppliesToAllGroups", \r
-function () {\r
-return this.colourAppliesToAllGroups;\r
-});\r
-Clazz.defineMethod (c$, "getColourText", \r
-function () {\r
-return this.showColourText;\r
-});\r
-Clazz.defineMethod (c$, "getConservationSelected", \r
-function () {\r
-return this.conservationColourSelected;\r
-});\r
-Clazz.defineMethod (c$, "getIncrement", \r
-function () {\r
-return this.increment;\r
-});\r
-Clazz.defineMethod (c$, "getScaleAboveWrapped", \r
-function () {\r
-return this.scaleAboveWrapped;\r
-});\r
-Clazz.defineMethod (c$, "getScaleLeftWrapped", \r
-function () {\r
-return this.scaleLeftWrapped;\r
-});\r
-Clazz.defineMethod (c$, "getScaleRightWrapped", \r
-function () {\r
-return this.scaleRightWrapped;\r
-});\r
-Clazz.defineMethod (c$, "getShowBoxes", \r
-function () {\r
-return this.showBoxes;\r
-});\r
-Clazz.defineMethod (c$, "getShowHiddenMarkers", \r
-function () {\r
-return this.showHiddenMarkers;\r
-});\r
-Clazz.defineMethod (c$, "getShowJVSuffix", \r
-function () {\r
-return this.showJVSuffix;\r
-});\r
-Clazz.defineMethod (c$, "getShowText", \r
-function () {\r
-return this.showText;\r
-});\r
-Clazz.defineMethod (c$, "getShowUnconserved", \r
-function () {\r
-return this.showUnconserved;\r
-});\r
-Clazz.defineMethod (c$, "getTextColour", \r
-function () {\r
-return this.textColour;\r
-});\r
-Clazz.defineMethod (c$, "getTextColour2", \r
-function () {\r
-return this.textColour2;\r
-});\r
-Clazz.defineMethod (c$, "getThreshold", \r
-function () {\r
-return this.threshold;\r
-});\r
-Clazz.defineMethod (c$, "getThresholdTextColour", \r
-function () {\r
-return this.thresholdTextColour;\r
-});\r
-Clazz.defineMethod (c$, "getWrapAlignment", \r
-function () {\r
-return this.wrapAlignment;\r
-});\r
-Clazz.defineMethod (c$, "getWrappedWidth", \r
-function () {\r
-return this.wrappedWidth;\r
-});\r
-Clazz.defineMethod (c$, "isColourByReferenceSeq", \r
-function () {\r
-return this.colourByReferenceSeq;\r
-});\r
-Clazz.defineMethod (c$, "isConservationColourSelected", \r
-function () {\r
-return this.conservationColourSelected;\r
-});\r
-Clazz.defineMethod (c$, "isDisplayReferenceSeq", \r
-function () {\r
-return this.displayReferenceSeq;\r
-});\r
-Clazz.defineMethod (c$, "isRenderGaps", \r
-function () {\r
-return this.renderGaps;\r
-});\r
-Clazz.defineMethod (c$, "isRightAlignIds", \r
-function () {\r
-return this.rightAlignIds;\r
-});\r
-Clazz.defineMethod (c$, "isSeqNameItalics", \r
-function () {\r
-return this.seqNameItalics;\r
-});\r
-Clazz.defineMethod (c$, "isShowAnnotation", \r
-function () {\r
-return this.showAnnotation;\r
-});\r
-Clazz.defineMethod (c$, "isShowColourText", \r
-function () {\r
-return this.showColourText;\r
-});\r
-Clazz.defineMethod (c$, "isShowSequenceFeaturesHeight", \r
-function () {\r
-return this.showSeqFeaturesHeight;\r
-});\r
-Clazz.defineMethod (c$, "isShowSequenceFeatures", \r
-function () {\r
-return this.showSequenceFeatures;\r
-});\r
-Clazz.overrideMethod (c$, "setAbovePIDThreshold", \r
-function (b) {\r
-this.abovePIDThreshold = b;\r
-}, "~B");\r
-Clazz.overrideMethod (c$, "setCharHeight", \r
-function (h) {\r
-this.charHeight = h;\r
-}, "~N");\r
-Clazz.overrideMethod (c$, "setCharWidth", \r
-function (w) {\r
-this.charWidth = w;\r
-}, "~N");\r
-Clazz.overrideMethod (c$, "setColourAppliesToAllGroups", \r
-function (b) {\r
-this.colourAppliesToAllGroups = b;\r
-}, "~B");\r
-Clazz.overrideMethod (c$, "setColourByReferenceSeq", \r
-function (colourByReferenceSeq) {\r
-this.colourByReferenceSeq = colourByReferenceSeq;\r
-}, "~B");\r
-Clazz.overrideMethod (c$, "setColourText", \r
-function (state) {\r
-this.showColourText = state;\r
-}, "~B");\r
-Clazz.overrideMethod (c$, "setConservationColourSelected", \r
-function (conservationColourSelected) {\r
-this.conservationColourSelected = conservationColourSelected;\r
-}, "~B");\r
-Clazz.overrideMethod (c$, "setConservationSelected", \r
-function (b) {\r
-this.conservationColourSelected = b;\r
-}, "~B");\r
-Clazz.overrideMethod (c$, "setDisplayReferenceSeq", \r
-function (displayReferenceSeq) {\r
-this.displayReferenceSeq = displayReferenceSeq;\r
-}, "~B");\r
-Clazz.overrideMethod (c$, "setIncrement", \r
-function (inc) {\r
-this.increment = inc;\r
-}, "~N");\r
-Clazz.overrideMethod (c$, "setRenderGaps", \r
-function (state) {\r
-this.renderGaps = state;\r
-}, "~B");\r
-Clazz.overrideMethod (c$, "setRightAlignIds", \r
-function (rightAlignIds) {\r
-this.rightAlignIds = rightAlignIds;\r
-}, "~B");\r
-Clazz.overrideMethod (c$, "setScaleAboveWrapped", \r
-function (b) {\r
-this.scaleAboveWrapped = b;\r
-}, "~B");\r
-Clazz.overrideMethod (c$, "setScaleLeftWrapped", \r
-function (b) {\r
-this.scaleLeftWrapped = b;\r
-}, "~B");\r
-Clazz.overrideMethod (c$, "setScaleRightWrapped", \r
-function (b) {\r
-this.scaleRightWrapped = b;\r
-}, "~B");\r
-Clazz.overrideMethod (c$, "setSeqNameItalics", \r
-function (italics) {\r
-this.seqNameItalics = italics;\r
-}, "~B");\r
-Clazz.overrideMethod (c$, "setShowAnnotation", \r
-function (b) {\r
-this.showAnnotation = b;\r
-}, "~B");\r
-Clazz.overrideMethod (c$, "setShowBoxes", \r
-function (state) {\r
-this.showBoxes = state;\r
-}, "~B");\r
-Clazz.overrideMethod (c$, "setShowColourText", \r
-function (showColourText) {\r
-this.showColourText = showColourText;\r
-}, "~B");\r
-Clazz.overrideMethod (c$, "setShowHiddenMarkers", \r
-function (show) {\r
-this.showHiddenMarkers = show;\r
-}, "~B");\r
-Clazz.overrideMethod (c$, "setShowJVSuffix", \r
-function (b) {\r
-this.showJVSuffix = b;\r
-}, "~B");\r
-Clazz.overrideMethod (c$, "setShowSequenceFeaturesHeight", \r
-function (selected) {\r
-this.showSeqFeaturesHeight = selected;\r
-}, "~B");\r
-Clazz.overrideMethod (c$, "setShowSequenceFeatures", \r
-function (b) {\r
-this.showSequenceFeatures = b;\r
-}, "~B");\r
-Clazz.overrideMethod (c$, "setShowText", \r
-function (state) {\r
-this.showText = state;\r
-}, "~B");\r
-Clazz.overrideMethod (c$, "setShowUnconserved", \r
-function (showunconserved) {\r
-this.showUnconserved = showunconserved;\r
-}, "~B");\r
-Clazz.overrideMethod (c$, "setTextColour", \r
-function (textColour) {\r
-this.textColour = textColour;\r
-}, "java.awt.Color");\r
-Clazz.overrideMethod (c$, "setTextColour2", \r
-function (textColour2) {\r
-this.textColour2 = textColour2;\r
-}, "java.awt.Color");\r
-Clazz.overrideMethod (c$, "setThreshold", \r
-function (thresh) {\r
-this.threshold = thresh;\r
-}, "~N");\r
-Clazz.overrideMethod (c$, "setThresholdTextColour", \r
-function (thresholdTextColour) {\r
-this.thresholdTextColour = thresholdTextColour;\r
-}, "~N");\r
-Clazz.overrideMethod (c$, "setWrapAlignment", \r
-function (state) {\r
-this.wrapAlignment = state;\r
-}, "~B");\r
-Clazz.overrideMethod (c$, "setWrappedWidth", \r
-function (w) {\r
-this.wrappedWidth = w;\r
-}, "~N");\r
-Clazz.overrideMethod (c$, "sameStyle", \r
-function (that) {\r
-return this.equals (that);\r
-}, "jalview.api.ViewStyleI");\r
-Clazz.defineMethod (c$, "getFontName", \r
-function () {\r
-return this.fontName;\r
-});\r
-Clazz.defineMethod (c$, "getFontSize", \r
-function () {\r
-return this.fontSize;\r
-});\r
-Clazz.defineMethod (c$, "getFontStyle", \r
-function () {\r
-return this.fontStyle;\r
-});\r
-Clazz.overrideMethod (c$, "setFontName", \r
-function (name) {\r
-this.fontName = name;\r
-}, "~S");\r
-Clazz.overrideMethod (c$, "setFontSize", \r
-function (size) {\r
-this.fontSize = size;\r
-}, "~N");\r
-Clazz.overrideMethod (c$, "setFontStyle", \r
-function (style) {\r
-this.fontStyle = style;\r
-}, "~N");\r
-Clazz.defineMethod (c$, "getIdWidth", \r
-function () {\r
-return this.idWidth;\r
-});\r
-Clazz.overrideMethod (c$, "setIdWidth", \r
-function (idWidth) {\r
-this.idWidth = idWidth;\r
-}, "~N");\r
-Clazz.defineMethod (c$, "isCentreColumnLabels", \r
-function () {\r
-return this.centreColumnLabels;\r
-});\r
-Clazz.overrideMethod (c$, "setCentreColumnLabels", \r
-function (centreColumnLabels) {\r
-this.centreColumnLabels = centreColumnLabels;\r
-}, "~B");\r
-Clazz.defineMethod (c$, "isShowDBRefs", \r
-function () {\r
-return this.showdbrefs;\r
-});\r
-Clazz.overrideMethod (c$, "setShowDBRefs", \r
-function (showdbrefs) {\r
-this.showdbrefs = showdbrefs;\r
-}, "~B");\r
-Clazz.defineMethod (c$, "isShowNPFeats", \r
-function () {\r
-return this.shownpfeats;\r
-});\r
-Clazz.overrideMethod (c$, "setShowNPFeats", \r
-function (shownpfeats) {\r
-this.shownpfeats = shownpfeats;\r
-}, "~B");\r
-Clazz.defineMethod (c$, "isScaleProteinAsCdna", \r
-function () {\r
-return this.scaleProteinAsCdna;\r
-});\r
-Clazz.overrideMethod (c$, "setScaleProteinAsCdna", \r
-function (b) {\r
-this.scaleProteinAsCdna = b;\r
-}, "~B");\r
-});\r
+Clazz.declarePackage ("jalview.viewmodel.styles");
+Clazz.load (["jalview.api.ViewStyleI", "java.awt.Color"], "jalview.viewmodel.styles.ViewStyle", ["java.lang.Boolean"], function () {
+c$ = Clazz.decorateAsClass (function () {
+this.abovePIDThreshold = false;
+this.charHeight = 0;
+this.charWidth = 0;
+this.idWidth = -1;
+this.colourAppliesToAllGroups = false;
+this.centreColumnLabels = false;
+this.showdbrefs = false;
+this.shownpfeats = false;
+this.colourByReferenceSeq = false;
+this.conservationColourSelected = false;
+this.displayReferenceSeq = false;
+this.increment = 0;
+this.renderGaps = true;
+this.rightAlignIds = false;
+this.scaleAboveWrapped = false;
+this.scaleLeftWrapped = true;
+this.scaleRightWrapped = true;
+this.seqNameItalics = false;
+this.showAnnotation = true;
+this.showBoxes = true;
+this.showColourText = false;
+this.showHiddenMarkers = true;
+this.showJVSuffix = true;
+this.showSeqFeaturesHeight = false;
+this.showSequenceFeatures = false;
+this.showText = true;
+this.showUnconserved = false;
+this.textColour = null;
+this.textColour2 = null;
+this.threshold = 0;
+this.thresholdTextColour = 0;
+this.upperCasebold = false;
+this.fontName = null;
+this.fontSize = 0;
+this.scaleProteinAsCdna = true;
+this.wrapAlignment = false;
+this.wrappedWidth = 0;
+this.fontStyle = 0;
+Clazz.instantialize (this, arguments);
+}, jalview.viewmodel.styles, "ViewStyle", null, jalview.api.ViewStyleI);
+Clazz.prepareFields (c$, function () {
+this.textColour = java.awt.Color.black;
+this.textColour2 = java.awt.Color.white;
+});
+Clazz.makeConstructor (c$,
+function (vs) {
+this.setAbovePIDThreshold (vs.getAbovePIDThreshold ());
+this.setCentreColumnLabels (vs.isCentreColumnLabels ());
+this.setCharHeight (vs.getCharHeight ());
+this.setCharWidth (vs.getCharWidth ());
+this.setColourAppliesToAllGroups (vs.getColourAppliesToAllGroups ());
+this.setColourByReferenceSeq (vs.isColourByReferenceSeq ());
+this.setColourText (vs.getColourText ());
+this.setConservationColourSelected (vs.isConservationColourSelected ());
+this.setConservationSelected (vs.getConservationSelected ());
+this.setDisplayReferenceSeq (vs.isDisplayReferenceSeq ());
+this.setFontName (vs.getFontName ());
+this.setFontSize (vs.getFontSize ());
+this.setFontStyle (vs.getFontStyle ());
+this.setIdWidth (vs.getIdWidth ());
+this.setIncrement (vs.getIncrement ());
+this.setRenderGaps (vs.isRenderGaps ());
+this.setRightAlignIds (vs.isRightAlignIds ());
+this.setScaleAboveWrapped (vs.getScaleAboveWrapped ());
+this.setScaleLeftWrapped (vs.getScaleLeftWrapped ());
+this.setScaleProteinAsCdna (vs.isScaleProteinAsCdna ());
+this.setScaleRightWrapped (vs.getScaleRightWrapped ());
+this.setSeqNameItalics (vs.isSeqNameItalics ());
+this.setShowAnnotation (vs.isShowAnnotation ());
+this.setShowBoxes (vs.getShowBoxes ());
+this.setShowColourText (vs.isShowColourText ());
+this.setShowDBRefs (vs.isShowDBRefs ());
+this.setShowHiddenMarkers (vs.getShowHiddenMarkers ());
+this.setShowJVSuffix (vs.getShowJVSuffix ());
+this.setShowNPFeats (vs.isShowNPFeats ());
+this.setShowSequenceFeaturesHeight (vs.isShowSequenceFeaturesHeight ());
+this.setShowSequenceFeatures (vs.isShowSequenceFeatures ());
+this.setShowText (vs.getShowText ());
+this.setShowUnconserved (vs.getShowUnconserved ());
+this.setTextColour (vs.getTextColour ());
+this.setTextColour2 (vs.getTextColour2 ());
+this.setThreshold (vs.getThreshold ());
+this.setThresholdTextColour (vs.getThresholdTextColour ());
+this.setUpperCasebold (vs.isUpperCasebold ());
+this.setWrapAlignment (vs.getWrapAlignment ());
+this.setWrappedWidth (vs.getWrappedWidth ());
+}, "jalview.api.ViewStyleI");
+Clazz.makeConstructor (c$,
+function () {
+});
+Clazz.overrideMethod (c$, "equals",
+function (other) {
+if (other == null || !(Clazz.instanceOf (other, jalview.viewmodel.styles.ViewStyle))) {
+return false;
+}var vs = other;
+var match = (this.getAbovePIDThreshold () == vs.getAbovePIDThreshold () && this.isCentreColumnLabels () == vs.isCentreColumnLabels () && this.getCharHeight () == vs.getCharHeight () && this.getCharWidth () == vs.getCharWidth () && this.getColourAppliesToAllGroups () == vs.getColourAppliesToAllGroups () && this.isColourByReferenceSeq () == vs.isColourByReferenceSeq () && this.getColourText () == vs.getColourText () && this.isConservationColourSelected () == vs.isConservationColourSelected () && this.getConservationSelected () == vs.getConservationSelected () && this.isDisplayReferenceSeq () == vs.isDisplayReferenceSeq () && this.getFontSize () == vs.getFontSize () && this.getFontStyle () == vs.getFontStyle () && this.getIdWidth () == vs.getIdWidth () && this.getIncrement () == vs.getIncrement () && this.isRenderGaps () == vs.isRenderGaps () && this.isRightAlignIds () == vs.isRightAlignIds () && this.getScaleAboveWrapped () == vs.getScaleAboveWrapped () && this.getScaleLeftWrapped () == vs.getScaleLeftWrapped () && this.isScaleProteinAsCdna () == vs.isScaleProteinAsCdna () && this.getScaleRightWrapped () == vs.getScaleRightWrapped () && this.isSeqNameItalics () == vs.isSeqNameItalics () && this.isShowAnnotation () == vs.isShowAnnotation () && this.getShowBoxes () == vs.getShowBoxes () && this.isShowColourText () == vs.isShowColourText () && this.isShowDBRefs () == vs.isShowDBRefs () && this.getShowHiddenMarkers () == vs.getShowHiddenMarkers () && this.getShowJVSuffix () == vs.getShowJVSuffix () && this.isShowNPFeats () == vs.isShowNPFeats () && this.isShowSequenceFeaturesHeight () == vs.isShowSequenceFeaturesHeight () && this.isShowSequenceFeatures () == vs.isShowSequenceFeatures () && this.getShowText () == vs.getShowText () && this.getShowUnconserved () == vs.getShowUnconserved () && this.getThreshold () == vs.getThreshold () && this.getThresholdTextColour () == vs.getThresholdTextColour () && this.isUpperCasebold () == vs.isUpperCasebold () && this.getWrapAlignment () == vs.getWrapAlignment () && this.getWrappedWidth () == vs.getWrappedWidth ());
+match = match && String.valueOf (this.getFontName ()).equals (String.valueOf (vs.getFontName ()));
+match = match && String.valueOf (this.getTextColour ()).equals (String.valueOf (vs.getTextColour ()));
+match = match && String.valueOf (this.getTextColour2 ()).equals (String.valueOf (vs.getTextColour2 ()));
+return match;
+}, "~O");
+Clazz.overrideMethod (c$, "hashCode",
+function () {
+var hash = 0;
+var m = 1;
+hash += m++ * Boolean.$valueOf (this.abovePIDThreshold).hashCode ();
+hash += m++ * Boolean.$valueOf (this.centreColumnLabels).hashCode ();
+hash += m++ * Boolean.$valueOf (this.colourAppliesToAllGroups).hashCode ();
+hash += m++ * Boolean.$valueOf (this.displayReferenceSeq).hashCode ();
+hash += m++ * Boolean.$valueOf (this.renderGaps).hashCode ();
+hash += m++ * Boolean.$valueOf (this.rightAlignIds).hashCode ();
+hash += m++ * Boolean.$valueOf (this.scaleProteinAsCdna).hashCode ();
+hash += m++ * Boolean.$valueOf (this.scaleRightWrapped).hashCode ();
+hash += m++ * Boolean.$valueOf (this.seqNameItalics).hashCode ();
+hash += m++ * Boolean.$valueOf (this.showAnnotation).hashCode ();
+hash += m++ * Boolean.$valueOf (this.showBoxes).hashCode ();
+hash += m++ * Boolean.$valueOf (this.showdbrefs).hashCode ();
+hash += m++ * Boolean.$valueOf (this.showJVSuffix).hashCode ();
+hash += m++ * Boolean.$valueOf (this.showSequenceFeatures).hashCode ();
+hash += m++ * Boolean.$valueOf (this.showUnconserved).hashCode ();
+hash += m++ * Boolean.$valueOf (this.wrapAlignment).hashCode ();
+hash += m++ * this.charHeight;
+hash += m++ * this.charWidth;
+hash += m++ * this.fontSize;
+hash += m++ * this.fontStyle;
+hash += m++ * this.idWidth;
+hash += String.valueOf (this.fontName).hashCode ();
+return hash;
+});
+Clazz.defineMethod (c$, "isUpperCasebold",
+function () {
+return this.upperCasebold;
+});
+Clazz.overrideMethod (c$, "setUpperCasebold",
+function (upperCasebold) {
+this.upperCasebold = upperCasebold;
+}, "~B");
+Clazz.defineMethod (c$, "getAbovePIDThreshold",
+function () {
+return this.abovePIDThreshold;
+});
+Clazz.defineMethod (c$, "getCharHeight",
+function () {
+return this.charHeight;
+});
+Clazz.defineMethod (c$, "getCharWidth",
+function () {
+return this.charWidth;
+});
+Clazz.defineMethod (c$, "getColourAppliesToAllGroups",
+function () {
+return this.colourAppliesToAllGroups;
+});
+Clazz.defineMethod (c$, "getColourText",
+function () {
+return this.showColourText;
+});
+Clazz.defineMethod (c$, "getConservationSelected",
+function () {
+return this.conservationColourSelected;
+});
+Clazz.defineMethod (c$, "getIncrement",
+function () {
+return this.increment;
+});
+Clazz.defineMethod (c$, "getScaleAboveWrapped",
+function () {
+return this.scaleAboveWrapped;
+});
+Clazz.defineMethod (c$, "getScaleLeftWrapped",
+function () {
+return this.scaleLeftWrapped;
+});
+Clazz.defineMethod (c$, "getScaleRightWrapped",
+function () {
+return this.scaleRightWrapped;
+});
+Clazz.defineMethod (c$, "getShowBoxes",
+function () {
+return this.showBoxes;
+});
+Clazz.defineMethod (c$, "getShowHiddenMarkers",
+function () {
+return this.showHiddenMarkers;
+});
+Clazz.defineMethod (c$, "getShowJVSuffix",
+function () {
+return this.showJVSuffix;
+});
+Clazz.defineMethod (c$, "getShowText",
+function () {
+return this.showText;
+});
+Clazz.defineMethod (c$, "getShowUnconserved",
+function () {
+return this.showUnconserved;
+});
+Clazz.defineMethod (c$, "getTextColour",
+function () {
+return this.textColour;
+});
+Clazz.defineMethod (c$, "getTextColour2",
+function () {
+return this.textColour2;
+});
+Clazz.defineMethod (c$, "getThreshold",
+function () {
+return this.threshold;
+});
+Clazz.defineMethod (c$, "getThresholdTextColour",
+function () {
+return this.thresholdTextColour;
+});
+Clazz.defineMethod (c$, "getWrapAlignment",
+function () {
+return this.wrapAlignment;
+});
+Clazz.defineMethod (c$, "getWrappedWidth",
+function () {
+return this.wrappedWidth;
+});
+Clazz.defineMethod (c$, "isColourByReferenceSeq",
+function () {
+return this.colourByReferenceSeq;
+});
+Clazz.defineMethod (c$, "isConservationColourSelected",
+function () {
+return this.conservationColourSelected;
+});
+Clazz.defineMethod (c$, "isDisplayReferenceSeq",
+function () {
+return this.displayReferenceSeq;
+});
+Clazz.defineMethod (c$, "isRenderGaps",
+function () {
+return this.renderGaps;
+});
+Clazz.defineMethod (c$, "isRightAlignIds",
+function () {
+return this.rightAlignIds;
+});
+Clazz.defineMethod (c$, "isSeqNameItalics",
+function () {
+return this.seqNameItalics;
+});
+Clazz.defineMethod (c$, "isShowAnnotation",
+function () {
+return this.showAnnotation;
+});
+Clazz.defineMethod (c$, "isShowColourText",
+function () {
+return this.showColourText;
+});
+Clazz.defineMethod (c$, "isShowSequenceFeaturesHeight",
+function () {
+return this.showSeqFeaturesHeight;
+});
+Clazz.defineMethod (c$, "isShowSequenceFeatures",
+function () {
+return this.showSequenceFeatures;
+});
+Clazz.overrideMethod (c$, "setAbovePIDThreshold",
+function (b) {
+this.abovePIDThreshold = b;
+}, "~B");
+Clazz.overrideMethod (c$, "setCharHeight",
+function (h) {
+this.charHeight = h;
+}, "~N");
+Clazz.overrideMethod (c$, "setCharWidth",
+function (w) {
+this.charWidth = w;
+}, "~N");
+Clazz.overrideMethod (c$, "setColourAppliesToAllGroups",
+function (b) {
+this.colourAppliesToAllGroups = b;
+}, "~B");
+Clazz.overrideMethod (c$, "setColourByReferenceSeq",
+function (colourByReferenceSeq) {
+this.colourByReferenceSeq = colourByReferenceSeq;
+}, "~B");
+Clazz.overrideMethod (c$, "setColourText",
+function (state) {
+this.showColourText = state;
+}, "~B");
+Clazz.overrideMethod (c$, "setConservationColourSelected",
+function (conservationColourSelected) {
+this.conservationColourSelected = conservationColourSelected;
+}, "~B");
+Clazz.overrideMethod (c$, "setConservationSelected",
+function (b) {
+this.conservationColourSelected = b;
+}, "~B");
+Clazz.overrideMethod (c$, "setDisplayReferenceSeq",
+function (displayReferenceSeq) {
+this.displayReferenceSeq = displayReferenceSeq;
+}, "~B");
+Clazz.overrideMethod (c$, "setIncrement",
+function (inc) {
+this.increment = inc;
+}, "~N");
+Clazz.overrideMethod (c$, "setRenderGaps",
+function (state) {
+this.renderGaps = state;
+}, "~B");
+Clazz.overrideMethod (c$, "setRightAlignIds",
+function (rightAlignIds) {
+this.rightAlignIds = rightAlignIds;
+}, "~B");
+Clazz.overrideMethod (c$, "setScaleAboveWrapped",
+function (b) {
+this.scaleAboveWrapped = b;
+}, "~B");
+Clazz.overrideMethod (c$, "setScaleLeftWrapped",
+function (b) {
+this.scaleLeftWrapped = b;
+}, "~B");
+Clazz.overrideMethod (c$, "setScaleRightWrapped",
+function (b) {
+this.scaleRightWrapped = b;
+}, "~B");
+Clazz.overrideMethod (c$, "setSeqNameItalics",
+function (italics) {
+this.seqNameItalics = italics;
+}, "~B");
+Clazz.overrideMethod (c$, "setShowAnnotation",
+function (b) {
+this.showAnnotation = b;
+}, "~B");
+Clazz.overrideMethod (c$, "setShowBoxes",
+function (state) {
+this.showBoxes = state;
+}, "~B");
+Clazz.overrideMethod (c$, "setShowColourText",
+function (showColourText) {
+this.showColourText = showColourText;
+}, "~B");
+Clazz.overrideMethod (c$, "setShowHiddenMarkers",
+function (show) {
+this.showHiddenMarkers = show;
+}, "~B");
+Clazz.overrideMethod (c$, "setShowJVSuffix",
+function (b) {
+this.showJVSuffix = b;
+}, "~B");
+Clazz.overrideMethod (c$, "setShowSequenceFeaturesHeight",
+function (selected) {
+this.showSeqFeaturesHeight = selected;
+}, "~B");
+Clazz.overrideMethod (c$, "setShowSequenceFeatures",
+function (b) {
+this.showSequenceFeatures = b;
+}, "~B");
+Clazz.overrideMethod (c$, "setShowText",
+function (state) {
+this.showText = state;
+}, "~B");
+Clazz.overrideMethod (c$, "setShowUnconserved",
+function (showunconserved) {
+this.showUnconserved = showunconserved;
+}, "~B");
+Clazz.overrideMethod (c$, "setTextColour",
+function (textColour) {
+this.textColour = textColour;
+}, "java.awt.Color");
+Clazz.overrideMethod (c$, "setTextColour2",
+function (textColour2) {
+this.textColour2 = textColour2;
+}, "java.awt.Color");
+Clazz.overrideMethod (c$, "setThreshold",
+function (thresh) {
+this.threshold = thresh;
+}, "~N");
+Clazz.overrideMethod (c$, "setThresholdTextColour",
+function (thresholdTextColour) {
+this.thresholdTextColour = thresholdTextColour;
+}, "~N");
+Clazz.overrideMethod (c$, "setWrapAlignment",
+function (state) {
+this.wrapAlignment = state;
+}, "~B");
+Clazz.overrideMethod (c$, "setWrappedWidth",
+function (w) {
+this.wrappedWidth = w;
+}, "~N");
+Clazz.overrideMethod (c$, "sameStyle",
+function (that) {
+return this.equals (that);
+}, "jalview.api.ViewStyleI");
+Clazz.defineMethod (c$, "getFontName",
+function () {
+return this.fontName;
+});
+Clazz.defineMethod (c$, "getFontSize",
+function () {
+return this.fontSize;
+});
+Clazz.defineMethod (c$, "getFontStyle",
+function () {
+return this.fontStyle;
+});
+Clazz.overrideMethod (c$, "setFontName",
+function (name) {
+this.fontName = name;
+}, "~S");
+Clazz.overrideMethod (c$, "setFontSize",
+function (size) {
+this.fontSize = size;
+}, "~N");
+Clazz.overrideMethod (c$, "setFontStyle",
+function (style) {
+this.fontStyle = style;
+}, "~N");
+Clazz.defineMethod (c$, "getIdWidth",
+function () {
+return this.idWidth;
+});
+Clazz.overrideMethod (c$, "setIdWidth",
+function (idWidth) {
+this.idWidth = idWidth;
+}, "~N");
+Clazz.defineMethod (c$, "isCentreColumnLabels",
+function () {
+return this.centreColumnLabels;
+});
+Clazz.overrideMethod (c$, "setCentreColumnLabels",
+function (centreColumnLabels) {
+this.centreColumnLabels = centreColumnLabels;
+}, "~B");
+Clazz.defineMethod (c$, "isShowDBRefs",
+function () {
+return this.showdbrefs;
+});
+Clazz.overrideMethod (c$, "setShowDBRefs",
+function (showdbrefs) {
+this.showdbrefs = showdbrefs;
+}, "~B");
+Clazz.defineMethod (c$, "isShowNPFeats",
+function () {
+return this.shownpfeats;
+});
+Clazz.overrideMethod (c$, "setShowNPFeats",
+function (shownpfeats) {
+this.shownpfeats = shownpfeats;
+}, "~B");
+Clazz.defineMethod (c$, "isScaleProteinAsCdna",
+function () {
+return this.scaleProteinAsCdna;
+});
+Clazz.overrideMethod (c$, "setScaleProteinAsCdna",
+function (b) {
+this.scaleProteinAsCdna = b;
+}, "~B");
+});
git://source.jalview.org / jalviewjs.git / blobdiff