JAL-1807 includes ?j2sdebug flag and DebugJS._(msg)

[jalviewjs.git] / site / j2s / jalview / analysis / Conservation.js

diff --git a/site/j2s/jalview/analysis/Conservation.js b/site/j2s/jalview/analysis/Conservation.js
index 4891461..e49ae2a 100644 (file)
--- a/site/j2s/jalview/analysis/Conservation.js
+++ b/site/j2s/jalview/analysis/Conservation.js
@@ -1,5 +1,5 @@
 Clazz.declarePackage ("jalview.analysis");\r
-Clazz.load (null, "jalview.analysis.Conservation", ["jalview.datamodel.Annotation", "$.Sequence", "jalview.schemes.ResidueProperties", "jalview.util.Comparison", "java.awt.Color", "java.lang.Character", "$.Double", "$.StringBuffer", "java.util.Hashtable", "$.Vector"], function () {\r
+Clazz.load (null, "jalview.analysis.Conservation", ["jalview.datamodel.Annotation", "$.Sequence", "jalview.schemes.ResidueProperties", "jalview.util.Comparison", "java.awt.Color", "java.lang.Character", "$.Double", "$.StringBuffer", "java.util.Hashtable", "$.Vector", "JU.DebugJS"], function () {\r
 c$ = Clazz.decorateAsClass (function () {\r
 this.sequences = null;\r
 this.start = 0;\r
@@ -202,9 +202,8 @@ this.consSymbs[i - this.start] = type + " " + this.consSymbs[i - this.start];
 }}count++;\r
 }}}\r
 if (count < 10) {\r
-{\r
-consString.append(""+count);\r
-}} else {\r
+consString.append ("" + count);\r
+} else {\r
 consString.append ((gapcons[0] == 1) ? "*" : "+");\r
 }} else {\r
 consString.append ('-');\r
@@ -354,6 +353,7 @@ vprop = value - qmin;
 vprop /= qmax;\r
 quality2.annotations[i] =  new jalview.datamodel.Annotation (" ", String.valueOf (value), ' ', value,  new java.awt.Color (minR + (maxR * vprop), minG + (maxG * vprop), minB + (maxB * vprop)));\r
 }}\r
+JU.DebugJS._ ("Conservation");\r
 }, "jalview.datamodel.AlignmentAnnotation,jalview.datamodel.AlignmentAnnotation,~N,~N");\r
 c$.calculateConservation = Clazz.defineMethod (c$, "calculateConservation", \r
 function (name, consHash, threshold, seqs, start, end, posOrNeg, consPercGaps, calcQuality) {\r