Merge branch 'master' of https://source.jalview.org/git/jalviewjs.git

[jalviewjs.git] / site / j2s / jalview / jsdev / GenericFileAdapter.js

diff --git a/site/j2s/jalview/jsdev/GenericFileAdapter.js b/site/j2s/jalview/jsdev/GenericFileAdapter.js
index de5baed..6df0a9f 100644 (file)
--- a/site/j2s/jalview/jsdev/GenericFileAdapter.js
+++ b/site/j2s/jalview/jsdev/GenericFileAdapter.js
@@ -1,85 +1,85 @@
-Clazz.declarePackage ("jalview.jsdev");\r
-Clazz.load (["jalview.io.AlignFile"], "jalview.jsdev.GenericFileAdapter", ["jalview.datamodel.AlignmentI", "jalview.io.FileParse", "java.io.BufferedReader", "$.InputStreamReader", "java.net.URL"], function () {\r
-c$ = Clazz.declareType (jalview.jsdev, "GenericFileAdapter", jalview.io.AlignFile);\r
-c$.getFile = Clazz.defineMethod (c$, "getFile", \r
-function (fileType, params) {\r
-var cl = null;\r
-try {\r
-cl = Clazz._4Name ("jalview.io." + fileType);\r
-} catch (e) {\r
-if (Clazz.exceptionOf (e, ClassNotFoundException)) {\r
-System.err.println ("did not find file jalview.io." + fileType);\r
-return null;\r
-} else {\r
-throw e;\r
-}\r
-}\r
-var m;\r
-var ex = null;\r
-try {\r
-switch (params.length) {\r
-case 0:\r
-return cl.newInstance ();\r
-case 1:\r
-m = (Clazz.instanceOf (params[0], jalview.io.FileParse) ? cl.getConstructor ([jalview.io.FileParse]) : cl.getConstructor ([jalview.datamodel.AlignmentI]));\r
-break;\r
-case 2:\r
-m = cl.getConstructor ([String, String]);\r
-break;\r
-default:\r
-return null;\r
-}\r
-return m.newInstance (params);\r
-} catch (e$$) {\r
-if (Clazz.exceptionOf (e$$, InstantiationException)) {\r
-var e = e$$;\r
-{\r
-ex = e;\r
-}\r
-} else if (Clazz.exceptionOf (e$$, IllegalAccessException)) {\r
-var e = e$$;\r
-{\r
-ex = e;\r
-}\r
-} else if (Clazz.exceptionOf (e$$, NoSuchMethodException)) {\r
-var e = e$$;\r
-{\r
-ex = e;\r
-}\r
-} else if (Clazz.exceptionOf (e$$, SecurityException)) {\r
-var e = e$$;\r
-{\r
-ex = e;\r
-}\r
-} else if (Clazz.exceptionOf (e$$, IllegalArgumentException)) {\r
-var e = e$$;\r
-{\r
-ex = e;\r
-}\r
-} else if (Clazz.exceptionOf (e$$, java.lang.reflect.InvocationTargetException)) {\r
-var e = e$$;\r
-{\r
-ex = e;\r
-}\r
-} else {\r
-throw e$$;\r
-}\r
-}\r
-if (ex != null) {\r
-System.err.println ("Error in GenericFileAdapter: " + ex);\r
-{\r
-alert(ex)\r
-}}return null;\r
-}, "~S,~A");\r
-c$.isJS = Clazz.defineMethod (c$, "isJS", \r
-function () {\r
-{\r
-return true;\r
-}});\r
-c$.getReader = Clazz.defineMethod (c$, "getReader", \r
-function (fileName, forceURL) {\r
-if (!forceURL && !jalview.jsdev.GenericFileAdapter.isJS ()) return  new java.io.BufferedReader ( new java.io.FileReader (fileName));\r
-if (fileName.indexOf ("//") < 0) fileName = "file://" + fileName;\r
-return  new java.io.BufferedReader ( new java.io.InputStreamReader ( new java.net.URL (fileName).openStream ()));\r
-}, "~S,~B");\r
-});\r
+Clazz.declarePackage ("jalview.jsdev");
+Clazz.load (["jalview.io.AlignFile"], "jalview.jsdev.GenericFileAdapter", ["jalview.datamodel.AlignmentI", "jalview.io.FileParse", "java.io.BufferedReader", "$.InputStreamReader", "java.net.URL"], function () {
+c$ = Clazz.declareType (jalview.jsdev, "GenericFileAdapter", jalview.io.AlignFile);
+c$.getFile = Clazz.defineMethod (c$, "getFile", 
+function (fileType, params) {
+var cl = null;
+try {
+cl = Clazz._4Name ("jalview.io." + fileType);
+} catch (e) {
+if (Clazz.exceptionOf (e, ClassNotFoundException)) {
+System.err.println ("did not find file jalview.io." + fileType);
+return null;
+} else {
+throw e;
+}
+}
+var m;
+var ex = null;
+try {
+switch (params.length) {
+case 0:
+return cl.newInstance ();
+case 1:
+m = (Clazz.instanceOf (params[0], jalview.io.FileParse) ? cl.getConstructor ([jalview.io.FileParse]) : cl.getConstructor ([jalview.datamodel.AlignmentI]));
+break;
+case 2:
+m = cl.getConstructor ([String, String]);
+break;
+default:
+return null;
+}
+return m.newInstance (params);
+} catch (e$$) {
+if (Clazz.exceptionOf (e$$, InstantiationException)) {
+var e = e$$;
+{
+ex = e;
+}
+} else if (Clazz.exceptionOf (e$$, IllegalAccessException)) {
+var e = e$$;
+{
+ex = e;
+}
+} else if (Clazz.exceptionOf (e$$, NoSuchMethodException)) {
+var e = e$$;
+{
+ex = e;
+}
+} else if (Clazz.exceptionOf (e$$, SecurityException)) {
+var e = e$$;
+{
+ex = e;
+}
+} else if (Clazz.exceptionOf (e$$, IllegalArgumentException)) {
+var e = e$$;
+{
+ex = e;
+}
+} else if (Clazz.exceptionOf (e$$, java.lang.reflect.InvocationTargetException)) {
+var e = e$$;
+{
+ex = e;
+}
+} else {
+throw e$$;
+}
+}
+if (ex != null) {
+System.err.println ("Error in GenericFileAdapter: " + ex);
+{
+alert(ex)
+}}return null;
+}, "~S,~A");
+c$.isJS = Clazz.defineMethod (c$, "isJS", 
+function () {
+{
+return true;
+}});
+c$.getReader = Clazz.defineMethod (c$, "getReader", 
+function (fileName, forceURL) {
+if (!forceURL && !jalview.jsdev.GenericFileAdapter.isJS ()) return  new java.io.BufferedReader ( new java.io.FileReader (fileName));
+if (fileName.indexOf ("//") < 0) fileName = "file://" + fileName;
+return  new java.io.BufferedReader ( new java.io.InputStreamReader ( new java.net.URL (fileName).openStream ()));
+}, "~S,~B");
+});