X-Git-Url: http://source.jalview.org/gitweb/?p=jalviewjs.git;a=blobdiff_plain;f=site%2Fj2s%2Fjalview%2Fanalysis%2FCodonComparator.js;h=afa4c8d62b018c21a9be0deaffe9241f48c61795;hp=7c07b9206a82d9164d73ba6007448c904db0d399;hb=b9b7a352eee79b7764c3b09c9d19663075061d8c;hpb=8ffd05b3abe52c0b6b79b011c0966361f82d5fe6

diff --git a/site/j2s/jalview/analysis/CodonComparator.js b/site/j2s/jalview/analysis/CodonComparator.js
index 7c07b92..afa4c8d 100644
--- a/site/j2s/jalview/analysis/CodonComparator.js
+++ b/site/j2s/jalview/analysis/CodonComparator.js
@@ -1,21 +1,21 @@
-Clazz.declarePackage ("jalview.analysis");
-c$ = Clazz.declareType (jalview.analysis, "CodonComparator", null, java.util.Comparator);
-Clazz.overrideMethod (c$, "compare", 
-function (ac1, ac2) {
-if (ac1 == null || ac2 == null || ac1.equals (ac2)) {
-return 0;
-}if (ac1.pos1 < ac2.pos1 && ac1.pos3 <= ac2.pos3) {
-return -1;
-}if (ac2.pos1 < ac1.pos1 && ac2.pos3 <= ac1.pos3) {
-return 1;
-}if (ac1.pos3 > ac2.pos3 && ac1.pos1 >= ac2.pos1) {
-return 1;
-}if (ac2.pos3 > ac1.pos3 && ac2.pos1 >= ac1.pos1) {
-return -1;
-}if (ac1.pos1 == ac2.pos1 && ac1.pos3 == ac2.pos3) {
-return Integer.compare (ac1.pos2, ac2.pos2);
-}var compareMiddles = Integer.compare (ac1.pos2, ac2.pos2);
-if (compareMiddles != 0) {
-return compareMiddles;
-}return Integer.compare (ac1.pos1, ac2.pos1);
-}, "jalview.datamodel.AlignedCodon,jalview.datamodel.AlignedCodon");
+Clazz.declarePackage ("jalview.analysis");
+c$ = Clazz.declareType (jalview.analysis, "CodonComparator", null, java.util.Comparator);
+Clazz.overrideMethod (c$, "compare", 
+function (ac1, ac2) {
+if (ac1 == null || ac2 == null || ac1.equals (ac2)) {
+return 0;
+}if (ac1.pos1 < ac2.pos1 && ac1.pos3 <= ac2.pos3) {
+return -1;
+}if (ac2.pos1 < ac1.pos1 && ac2.pos3 <= ac1.pos3) {
+return 1;
+}if (ac1.pos3 > ac2.pos3 && ac1.pos1 >= ac2.pos1) {
+return 1;
+}if (ac2.pos3 > ac1.pos3 && ac2.pos1 >= ac1.pos1) {
+return -1;
+}if (ac1.pos1 == ac2.pos1 && ac1.pos3 == ac2.pos3) {
+return Integer.compare (ac1.pos2, ac2.pos2);
+}var compareMiddles = Integer.compare (ac1.pos2, ac2.pos2);
+if (compareMiddles != 0) {
+return compareMiddles;
+}return Integer.compare (ac1.pos1, ac2.pos1);
+}, "jalview.datamodel.AlignedCodon,jalview.datamodel.AlignedCodon");