X-Git-Url: http://source.jalview.org/gitweb/?p=jalviewjs.git;a=blobdiff_plain;f=site%2Fj2s%2Fjalview%2Fanalysis%2FConservation.js;h=e49ae2a8f46736743550829de6fa6d1d735059e1;hp=48914616ff1c7c660b3284fc6468a72569ab8735;hb=7301a2415adab88038b291fc54caeeb3a5a47a44;hpb=6154cb57a6eac3bb1344b8342495f5bb701ee921

diff --git a/site/j2s/jalview/analysis/Conservation.js b/site/j2s/jalview/analysis/Conservation.js
index 4891461..e49ae2a 100644
--- a/site/j2s/jalview/analysis/Conservation.js
+++ b/site/j2s/jalview/analysis/Conservation.js
@@ -1,5 +1,5 @@
 Clazz.declarePackage ("jalview.analysis");
-Clazz.load (null, "jalview.analysis.Conservation", ["jalview.datamodel.Annotation", "$.Sequence", "jalview.schemes.ResidueProperties", "jalview.util.Comparison", "java.awt.Color", "java.lang.Character", "$.Double", "$.StringBuffer", "java.util.Hashtable", "$.Vector"], function () {
+Clazz.load (null, "jalview.analysis.Conservation", ["jalview.datamodel.Annotation", "$.Sequence", "jalview.schemes.ResidueProperties", "jalview.util.Comparison", "java.awt.Color", "java.lang.Character", "$.Double", "$.StringBuffer", "java.util.Hashtable", "$.Vector", "JU.DebugJS"], function () {
 c$ = Clazz.decorateAsClass (function () {
 this.sequences = null;
 this.start = 0;
@@ -202,9 +202,8 @@ this.consSymbs[i - this.start] = type + " " + this.consSymbs[i - this.start];
 }}count++;
 }}}
 if (count < 10) {
-{
-consString.append(""+count);
-}} else {
+consString.append ("" + count);
+} else {
 consString.append ((gapcons[0] == 1) ? "*" : "+");
 }} else {
 consString.append ('-');
@@ -354,6 +353,7 @@ vprop = value - qmin;
 vprop /= qmax;
 quality2.annotations[i] =  new jalview.datamodel.Annotation (" ", String.valueOf (value), ' ', value,  new java.awt.Color (minR + (maxR * vprop), minG + (maxG * vprop), minB + (maxB * vprop)));
 }}
+JU.DebugJS._ ("Conservation");
 }, "jalview.datamodel.AlignmentAnnotation,jalview.datamodel.AlignmentAnnotation,~N,~N");
 c$.calculateConservation = Clazz.defineMethod (c$, "calculateConservation", 
 function (name, consHash, threshold, seqs, start, end, posOrNeg, consPercGaps, calcQuality) {