X-Git-Url: http://source.jalview.org/gitweb/?p=jalviewjs.git;a=blobdiff_plain;f=site%2Fj2s%2Fjalview%2Fappletgui%2FSequenceRenderer.js;h=908e633e644b58a3fa8481f7ee5d6ad2d99134c1;hp=103924e80e2f0fef45dbf8f32ec0f7d51b2b00be;hb=36d803e4a1f98728e91e80de5fa0b95e0cadb0d4;hpb=5b669b6c1a4f1f29b178283a46bc22fcd66aabad

diff --git a/site/j2s/jalview/appletgui/SequenceRenderer.js b/site/j2s/jalview/appletgui/SequenceRenderer.js
index 103924e..908e633 100644
--- a/site/j2s/jalview/appletgui/SequenceRenderer.js
+++ b/site/j2s/jalview/appletgui/SequenceRenderer.js
@@ -1,5 +1,5 @@
 Clazz.declarePackage ("jalview.appletgui");
-Clazz.load (["jalview.api.SequenceRenderer"], "jalview.appletgui.SequenceRenderer", ["jalview.util.Comparison", "java.awt.Color", "$.Font"], function () {
+Clazz.load (["jalview.api.SequenceRenderer"], "jalview.appletgui.SequenceRenderer", ["awt2swing.Util", "jalview.util.Comparison", "java.awt.Color", "$.Font"], function () {
 c$ = Clazz.decorateAsClass (function () {
 this.av = null;
 this.fm = null;
@@ -41,7 +41,7 @@ col = fr.findFeatureColour (col, seq, position);
 Clazz.defineMethod (c$, "getBoxColour", 
 function (cs, seq, i) {
 if (cs != null) {
-this.resBoxColour = cs.findColour (seq.getCharAt (i), i, seq);
+this.resBoxColour = cs.findColourSeq (seq.getCharAt (i), i, seq);
 } else if (this.forOverview && !jalview.util.Comparison.isGap (seq.getCharAt (i))) {
 this.resBoxColour = java.awt.Color.lightGray;
 } else {
@@ -141,7 +141,7 @@ this.graphics.setFont (boldFont);
 this.graphics.setFont (this.av.font);
 bold = false;
 }}charOffset = Clazz.doubleToInt ((avCharWidth - this.fm.charWidth (s)) / 2);
-this.graphics.drawString (String.valueOf (s), charOffset + avCharWidth * (i - start), y1);
+awt2swing.Util.drawString (this.graphics, String.valueOf (s), charOffset + avCharWidth * (i - start), y1);
 }
 }, "jalview.datamodel.SequenceI,~N,~N,~N");
 Clazz.defineMethod (c$, "getDisplayChar", 
@@ -177,7 +177,7 @@ for (var i = start; i <= end; i++) {
 if (i < seq.getLength ()) {
 s = seq.getCharAt (i);
 }charOffset = Clazz.doubleToInt ((avCharWidth - this.fm.charWidth (s)) / 2);
-this.graphics.drawString (String.valueOf (s), charOffset + x1 + avCharWidth * (i - start), y1 + avCharHeight - pady);
+awt2swing.Util.drawString (this.graphics, String.valueOf (s), charOffset + x1 + avCharWidth * (i - start), y1 + avCharHeight - pady);
 }
 }}, "jalview.datamodel.SequenceI,~N,~N,~N,~N");
 Clazz.defineMethod (c$, "drawCursor", 
@@ -191,6 +191,6 @@ this.graphics.setColor (java.awt.Color.white);
 var s = seq.getCharAt (res);
 if (this.av.validCharWidth) {
 charOffset = Clazz.doubleToInt ((this.av.getCharWidth () - this.fm.charWidth (s)) / 2);
-this.graphics.drawString (String.valueOf (s), charOffset + x1, (y1 + this.av.getCharHeight ()) - pady);
+awt2swing.Util.drawString (this.graphics, String.valueOf (s), charOffset + x1, (y1 + this.av.getCharHeight ()) - pady);
 }}, "jalview.datamodel.SequenceI,~N,~N,~N");
 });