X-Git-Url: http://source.jalview.org/gitweb/?p=jalviewjs.git;a=blobdiff_plain;f=site%2Fj2s%2Fjalview%2Fcommands%2FChangeCaseCommand.js;fp=site%2Fj2s%2Fjalview%2Fcommands%2FChangeCaseCommand.js;h=0ebfc96568a3f143681d0fde112e427c2d5c0eaf;hp=fb085d662a6238a3532ea518d9dfe36fc7a34661;hb=b9b7a352eee79b7764c3b09c9d19663075061d8c;hpb=7301a2415adab88038b291fc54caeeb3a5a47a44

diff --git a/site/j2s/jalview/commands/ChangeCaseCommand.js b/site/j2s/jalview/commands/ChangeCaseCommand.js
index fb085d6..0ebfc96 100644
--- a/site/j2s/jalview/commands/ChangeCaseCommand.js
+++ b/site/j2s/jalview/commands/ChangeCaseCommand.js
@@ -1,74 +1,74 @@
-Clazz.declarePackage ("jalview.commands");
-Clazz.load (["jalview.commands.CommandI"], "jalview.commands.ChangeCaseCommand", ["java.lang.StringBuffer"], function () {
-c$ = Clazz.decorateAsClass (function () {
-this.description = null;
-this.caseChange = -1;
-this.seqs = null;
-this.regions = null;
-Clazz.instantialize (this, arguments);
-}, jalview.commands, "ChangeCaseCommand", null, jalview.commands.CommandI);
-Clazz.makeConstructor (c$, 
-function (description, seqs, regions, caseChange) {
-this.description = description;
-this.seqs = seqs;
-this.regions = regions;
-this.caseChange = caseChange;
-this.doCommand (null);
-}, "~S,~A,java.util.List,~N");
-Clazz.overrideMethod (c$, "getDescription", 
-function () {
-return this.description;
-});
-Clazz.overrideMethod (c$, "getSize", 
-function () {
-return 1;
-});
-Clazz.overrideMethod (c$, "doCommand", 
-function (views) {
-this.changeCase (true);
-}, "~A");
-Clazz.overrideMethod (c$, "undoCommand", 
-function (views) {
-this.changeCase (false);
-}, "~A");
-Clazz.defineMethod (c$, "changeCase", 
-function (doCommand) {
-var sequence;
-var start;
-var end;
-var nextChar;
-for (var r, $r = this.regions.iterator (); $r.hasNext () && ((r = $r.next ()) || true);) {
-start = r[0];
-for (var s = 0; s < this.seqs.length; s++) {
-sequence = this.seqs[s].getSequenceAsString ();
-var newSeq =  new StringBuffer ();
-if (r[1] > sequence.length) {
-end = sequence.length;
-} else {
-end = r[1];
-}if (start > 0) {
-newSeq.append (sequence.substring (0, start));
-}if ((this.caseChange == jalview.commands.ChangeCaseCommand.TO_UPPER && doCommand) || (this.caseChange == jalview.commands.ChangeCaseCommand.TO_LOWER && !doCommand)) {
-newSeq.append (sequence.substring (start, end).toUpperCase ());
-} else if ((this.caseChange == jalview.commands.ChangeCaseCommand.TO_LOWER && doCommand) || (this.caseChange == jalview.commands.ChangeCaseCommand.TO_UPPER && !doCommand)) {
-newSeq.append (sequence.substring (start, end).toLowerCase ());
-} else {
-for (var c = start; c < end; c++) {
-nextChar = sequence.charAt (c);
-if ('a' <= nextChar && nextChar <= 'z') {
-nextChar = String.fromCharCode (nextChar.charCodeAt (0) - (32));
-} else if ('A' <= nextChar && nextChar <= 'Z') {
-nextChar = String.fromCharCode (nextChar.charCodeAt (0) + (32));
-}newSeq.append (nextChar);
-}
-}if (end < sequence.length) {
-newSeq.append (sequence.substring (end));
-}this.seqs[s].setSequence (newSeq.toString ());
-}
-}
-}, "~B");
-Clazz.defineStatics (c$,
-"TO_LOWER", 0,
-"TO_UPPER", 1,
-"TOGGLE_CASE", 2);
-});
+Clazz.declarePackage ("jalview.commands");
+Clazz.load (["jalview.commands.CommandI"], "jalview.commands.ChangeCaseCommand", ["java.lang.StringBuffer"], function () {
+c$ = Clazz.decorateAsClass (function () {
+this.description = null;
+this.caseChange = -1;
+this.seqs = null;
+this.regions = null;
+Clazz.instantialize (this, arguments);
+}, jalview.commands, "ChangeCaseCommand", null, jalview.commands.CommandI);
+Clazz.makeConstructor (c$, 
+function (description, seqs, regions, caseChange) {
+this.description = description;
+this.seqs = seqs;
+this.regions = regions;
+this.caseChange = caseChange;
+this.doCommand (null);
+}, "~S,~A,java.util.List,~N");
+Clazz.overrideMethod (c$, "getDescription", 
+function () {
+return this.description;
+});
+Clazz.overrideMethod (c$, "getSize", 
+function () {
+return 1;
+});
+Clazz.overrideMethod (c$, "doCommand", 
+function (views) {
+this.changeCase (true);
+}, "~A");
+Clazz.overrideMethod (c$, "undoCommand", 
+function (views) {
+this.changeCase (false);
+}, "~A");
+Clazz.defineMethod (c$, "changeCase", 
+function (doCommand) {
+var sequence;
+var start;
+var end;
+var nextChar;
+for (var r, $r = this.regions.iterator (); $r.hasNext () && ((r = $r.next ()) || true);) {
+start = r[0];
+for (var s = 0; s < this.seqs.length; s++) {
+sequence = this.seqs[s].getSequenceAsString ();
+var newSeq =  new StringBuffer ();
+if (r[1] > sequence.length) {
+end = sequence.length;
+} else {
+end = r[1];
+}if (start > 0) {
+newSeq.append (sequence.substring (0, start));
+}if ((this.caseChange == jalview.commands.ChangeCaseCommand.TO_UPPER && doCommand) || (this.caseChange == jalview.commands.ChangeCaseCommand.TO_LOWER && !doCommand)) {
+newSeq.append (sequence.substring (start, end).toUpperCase ());
+} else if ((this.caseChange == jalview.commands.ChangeCaseCommand.TO_LOWER && doCommand) || (this.caseChange == jalview.commands.ChangeCaseCommand.TO_UPPER && !doCommand)) {
+newSeq.append (sequence.substring (start, end).toLowerCase ());
+} else {
+for (var c = start; c < end; c++) {
+nextChar = sequence.charAt (c);
+if ('a' <= nextChar && nextChar <= 'z') {
+nextChar = String.fromCharCode (nextChar.charCodeAt (0) - (32));
+} else if ('A' <= nextChar && nextChar <= 'Z') {
+nextChar = String.fromCharCode (nextChar.charCodeAt (0) + (32));
+}newSeq.append (nextChar);
+}
+}if (end < sequence.length) {
+newSeq.append (sequence.substring (end));
+}this.seqs[s].setSequence (newSeq.toString ());
+}
+}
+}, "~B");
+Clazz.defineStatics (c$,
+"TO_LOWER", 0,
+"TO_UPPER", 1,
+"TOGGLE_CASE", 2);
+});