X-Git-Url: http://source.jalview.org/gitweb/?p=jalviewjs.git;a=blobdiff_plain;f=site%2Fj2s%2Fjalview%2Fdatamodel%2FCigarCigar.js;h=9448de40f88bf3466790a1c94c14fa767cbe7a58;hp=12f3e399d1d4fbc8f7c9ffa7e617b6b788422c10;hb=b9b7a352eee79b7764c3b09c9d19663075061d8c;hpb=8ffd05b3abe52c0b6b79b011c0966361f82d5fe6 diff --git a/site/j2s/jalview/datamodel/CigarCigar.js b/site/j2s/jalview/datamodel/CigarCigar.js index 12f3e39..9448de4 100644 --- a/site/j2s/jalview/datamodel/CigarCigar.js +++ b/site/j2s/jalview/datamodel/CigarCigar.js @@ -1,22 +1,22 @@ -Clazz.declarePackage ("jalview.datamodel"); -Clazz.load (["jalview.datamodel.CigarSimple"], "jalview.datamodel.CigarCigar", null, function () { -c$ = Clazz.decorateAsClass (function () { -this.refCigar = null; -Clazz.instantialize (this, arguments); -}, jalview.datamodel, "CigarCigar", jalview.datamodel.CigarSimple); -Clazz.makeConstructor (c$, -function (cigar) { -Clazz.superConstructor (this, jalview.datamodel.CigarCigar); -this.refCigar = cigar; -}, "jalview.datamodel.SeqCigar"); -Clazz.overrideMethod (c$, "getSequenceString", -function (GapChar) { -if (this.length == 0) { -return ""; -}var refString = this.refCigar.getSequenceString (GapChar); -if (refString != null) { -return (this.length == 0) ? "" : this.getSequenceAndDeletions (refString, GapChar)[0]; -} else { -return null; -}}, "~S"); -}); +Clazz.declarePackage ("jalview.datamodel"); +Clazz.load (["jalview.datamodel.CigarSimple"], "jalview.datamodel.CigarCigar", null, function () { +c$ = Clazz.decorateAsClass (function () { +this.refCigar = null; +Clazz.instantialize (this, arguments); +}, jalview.datamodel, "CigarCigar", jalview.datamodel.CigarSimple); +Clazz.makeConstructor (c$, +function (cigar) { +Clazz.superConstructor (this, jalview.datamodel.CigarCigar); +this.refCigar = cigar; +}, "jalview.datamodel.SeqCigar"); +Clazz.overrideMethod (c$, "getSequenceString", +function (GapChar) { +if (this.length == 0) { +return ""; +}var refString = this.refCigar.getSequenceString (GapChar); +if (refString != null) { +return (this.length == 0) ? "" : this.getSequenceAndDeletions (refString, GapChar)[0]; +} else { +return null; +}}, "~S"); +});