X-Git-Url: http://source.jalview.org/gitweb/?p=jalviewjs.git;a=blobdiff_plain;f=site%2Fj2s%2Fjalview%2Futil%2FUrlLink.js;h=a28894bccd830620bc39046202c7492bf5c62c5e;hp=c50c6ae7c71c77eb75505df503faf4854d8607a2;hb=b9b7a352eee79b7764c3b09c9d19663075061d8c;hpb=8ffd05b3abe52c0b6b79b011c0966361f82d5fe6

diff --git a/site/j2s/jalview/util/UrlLink.js b/site/j2s/jalview/util/UrlLink.js
index c50c6ae..a28894b 100644
--- a/site/j2s/jalview/util/UrlLink.js
+++ b/site/j2s/jalview/util/UrlLink.js
@@ -1,148 +1,148 @@
-Clazz.declarePackage ("jalview.util");
-Clazz.load (null, "jalview.util.UrlLink", ["jalview.jsdev.RegExp", "java.util.Vector"], function () {
-c$ = Clazz.decorateAsClass (function () {
-this.url_suffix = null;
-this.url_prefix = null;
-this.target = null;
-this.label = null;
-this.regexReplace = null;
-this.dynamic = false;
-this.invalidMessage = null;
-Clazz.instantialize (this, arguments);
-}, jalview.util, "UrlLink");
-Clazz.makeConstructor (c$, 
-function (link) {
-var sep = link.indexOf ("|");
-var psqid = link.indexOf ("$SEQUENCE_ID");
-if (psqid > -1) {
-this.dynamic = true;
-var p = sep;
-do {
-sep = p;
-p = link.indexOf ("|", sep + 1);
-} while (p > sep && p < psqid);
-this.label = link.substring (0, sep);
-if (this.label.indexOf ("|") > -1) {
-this.target = this.label.substring (0, this.label.indexOf ("|"));
-} else if (this.label.indexOf (" ") > 2) {
-this.target = this.label.substring (0, this.label.indexOf (" "));
-} else {
-this.target = this.label;
-}this.url_prefix = link.substring (sep + 1, psqid);
-if (link.indexOf ("$SEQUENCE_ID=/") == psqid && (p = link.indexOf ("/=$", psqid + 14)) > psqid + 14) {
-this.url_suffix = link.substring (p + 3);
-this.regexReplace = link.substring (psqid + 14, p);
-try {
-var rg = jalview.jsdev.RegExp.perlCode ("/" + this.regexReplace + "/");
-if (rg == null) {
-this.invalidMessage = "Invalid Regular Expression : '" + this.regexReplace + "'\n";
-}} catch (e) {
-if (Clazz.exceptionOf (e, Exception)) {
-this.invalidMessage = "Invalid Regular Expression : '" + this.regexReplace + "'\n";
-} else {
-throw e;
-}
-}
-} else {
-this.regexReplace = null;
-if (link.indexOf ("$SEQUENCE_ID$") == psqid) {
-this.url_suffix = link.substring (psqid + 13);
-this.regexReplace = null;
-} else {
-this.invalidMessage = "Warning: invalid regex structure for URL link : " + link;
-}}} else {
-this.target = link.substring (0, sep);
-this.label = link.substring (0, sep = link.lastIndexOf ("|"));
-this.url_prefix = link.substring (sep + 1);
-this.regexReplace = null;
-this.url_suffix = null;
-}}, "~S");
-Clazz.defineMethod (c$, "getUrl_suffix", 
-function () {
-return this.url_suffix;
-});
-Clazz.defineMethod (c$, "getUrl_prefix", 
-function () {
-return this.url_prefix;
-});
-Clazz.defineMethod (c$, "getTarget", 
-function () {
-return this.target;
-});
-Clazz.defineMethod (c$, "getLabel", 
-function () {
-return this.label;
-});
-Clazz.defineMethod (c$, "getRegexReplace", 
-function () {
-return this.regexReplace;
-});
-Clazz.defineMethod (c$, "getInvalidMessage", 
-function () {
-return this.invalidMessage;
-});
-Clazz.defineMethod (c$, "isValid", 
-function () {
-return this.invalidMessage == null;
-});
-Clazz.defineMethod (c$, "makeUrls", 
-function (idstring, onlyIfMatches) {
-if (this.dynamic) {
-if (this.regexReplace != null) {
-var rg = jalview.jsdev.RegExp.perlCode ("/" + this.regexReplace + "/");
-if (rg.search (idstring)) {
-var ns = rg.numSubs ();
-if (ns == 0) {
-return  Clazz.newArray (-1, [rg.stringMatchedI (ns), this.url_prefix + rg.stringMatched () + this.url_suffix]);
-} else {
-for (var s = 0; s <= rg.numSubs (); s++) {
-System.err.println ("Sub " + s + " : " + rg.matchedFromI (s) + " : " + rg.matchedToI (s) + " : '" + rg.stringMatchedI (s) + "'");
-}
-var subs =  new java.util.Vector ();
-var s = 0;
-while (s <= ns) {
-if (s + 1 <= ns && rg.matchedToI (s) > -1 && rg.matchedToI (s + 1) > -1 && rg.matchedToI (s + 1) < rg.matchedToI (s)) {
-var r = s + 1;
-var mtch = "";
-while (r <= ns && rg.matchedToI (r) <= rg.matchedToI (s)) {
-if (rg.matchedFromI (r) > -1) {
-mtch += rg.stringMatchedI (r);
-}r++;
-}
-if (mtch.length > 0) {
-subs.addElement (mtch);
-subs.addElement (this.url_prefix + mtch + this.url_suffix);
-}s = r;
-} else {
-if (rg.matchedFromI (s) > -1) {
-subs.addElement (rg.stringMatchedI (s));
-subs.addElement (this.url_prefix + rg.stringMatchedI (s) + this.url_suffix);
-}s++;
-}}
-var res =  new Array (subs.size ());
-for (var r = 0, rs = subs.size (); r < rs; r++) {
-res[r] = subs.elementAt (r);
-}
-subs.removeAllElements ();
-return res;
-}}if (onlyIfMatches) {
-return null;
-}}if (idstring.indexOf ("|") > -1) {
-idstring = idstring.substring (idstring.lastIndexOf ("|") + 1);
-}return  Clazz.newArray (-1, [idstring, this.url_prefix + idstring + this.url_suffix]);
-} else {
-return  Clazz.newArray (-1, ["", this.url_prefix]);
-}}, "~S,~B");
-Clazz.overrideMethod (c$, "toString", 
-function () {
-return this.label + "|" + this.url_prefix + (this.dynamic ? ("$SEQUENCE_ID" + ((this.regexReplace != null) ? "=" + this.regexReplace + "=$" : "$")) : "") + ((this.url_suffix == null) ? "" : this.url_suffix);
-});
-Clazz.defineMethod (c$, "isDynamic", 
-function () {
-return this.dynamic;
-});
-Clazz.defineMethod (c$, "setLabel", 
-function (newlabel) {
-this.label = newlabel;
-}, "~S");
-});
+Clazz.declarePackage ("jalview.util");
+Clazz.load (null, "jalview.util.UrlLink", ["jalview.jsdev.RegExp", "java.util.Vector"], function () {
+c$ = Clazz.decorateAsClass (function () {
+this.url_suffix = null;
+this.url_prefix = null;
+this.target = null;
+this.label = null;
+this.regexReplace = null;
+this.dynamic = false;
+this.invalidMessage = null;
+Clazz.instantialize (this, arguments);
+}, jalview.util, "UrlLink");
+Clazz.makeConstructor (c$, 
+function (link) {
+var sep = link.indexOf ("|");
+var psqid = link.indexOf ("$SEQUENCE_ID");
+if (psqid > -1) {
+this.dynamic = true;
+var p = sep;
+do {
+sep = p;
+p = link.indexOf ("|", sep + 1);
+} while (p > sep && p < psqid);
+this.label = link.substring (0, sep);
+if (this.label.indexOf ("|") > -1) {
+this.target = this.label.substring (0, this.label.indexOf ("|"));
+} else if (this.label.indexOf (" ") > 2) {
+this.target = this.label.substring (0, this.label.indexOf (" "));
+} else {
+this.target = this.label;
+}this.url_prefix = link.substring (sep + 1, psqid);
+if (link.indexOf ("$SEQUENCE_ID=/") == psqid && (p = link.indexOf ("/=$", psqid + 14)) > psqid + 14) {
+this.url_suffix = link.substring (p + 3);
+this.regexReplace = link.substring (psqid + 14, p);
+try {
+var rg = jalview.jsdev.RegExp.perlCode ("/" + this.regexReplace + "/");
+if (rg == null) {
+this.invalidMessage = "Invalid Regular Expression : '" + this.regexReplace + "'\n";
+}} catch (e) {
+if (Clazz.exceptionOf (e, Exception)) {
+this.invalidMessage = "Invalid Regular Expression : '" + this.regexReplace + "'\n";
+} else {
+throw e;
+}
+}
+} else {
+this.regexReplace = null;
+if (link.indexOf ("$SEQUENCE_ID$") == psqid) {
+this.url_suffix = link.substring (psqid + 13);
+this.regexReplace = null;
+} else {
+this.invalidMessage = "Warning: invalid regex structure for URL link : " + link;
+}}} else {
+this.target = link.substring (0, sep);
+this.label = link.substring (0, sep = link.lastIndexOf ("|"));
+this.url_prefix = link.substring (sep + 1);
+this.regexReplace = null;
+this.url_suffix = null;
+}}, "~S");
+Clazz.defineMethod (c$, "getUrl_suffix", 
+function () {
+return this.url_suffix;
+});
+Clazz.defineMethod (c$, "getUrl_prefix", 
+function () {
+return this.url_prefix;
+});
+Clazz.defineMethod (c$, "getTarget", 
+function () {
+return this.target;
+});
+Clazz.defineMethod (c$, "getLabel", 
+function () {
+return this.label;
+});
+Clazz.defineMethod (c$, "getRegexReplace", 
+function () {
+return this.regexReplace;
+});
+Clazz.defineMethod (c$, "getInvalidMessage", 
+function () {
+return this.invalidMessage;
+});
+Clazz.defineMethod (c$, "isValid", 
+function () {
+return this.invalidMessage == null;
+});
+Clazz.defineMethod (c$, "makeUrls", 
+function (idstring, onlyIfMatches) {
+if (this.dynamic) {
+if (this.regexReplace != null) {
+var rg = jalview.jsdev.RegExp.perlCode ("/" + this.regexReplace + "/");
+if (rg.search (idstring)) {
+var ns = rg.numSubs ();
+if (ns == 0) {
+return  Clazz.newArray (-1, [rg.stringMatchedI (ns), this.url_prefix + rg.stringMatched () + this.url_suffix]);
+} else {
+for (var s = 0; s <= rg.numSubs (); s++) {
+System.err.println ("Sub " + s + " : " + rg.matchedFromI (s) + " : " + rg.matchedToI (s) + " : '" + rg.stringMatchedI (s) + "'");
+}
+var subs =  new java.util.Vector ();
+var s = 0;
+while (s <= ns) {
+if (s + 1 <= ns && rg.matchedToI (s) > -1 && rg.matchedToI (s + 1) > -1 && rg.matchedToI (s + 1) < rg.matchedToI (s)) {
+var r = s + 1;
+var mtch = "";
+while (r <= ns && rg.matchedToI (r) <= rg.matchedToI (s)) {
+if (rg.matchedFromI (r) > -1) {
+mtch += rg.stringMatchedI (r);
+}r++;
+}
+if (mtch.length > 0) {
+subs.addElement (mtch);
+subs.addElement (this.url_prefix + mtch + this.url_suffix);
+}s = r;
+} else {
+if (rg.matchedFromI (s) > -1) {
+subs.addElement (rg.stringMatchedI (s));
+subs.addElement (this.url_prefix + rg.stringMatchedI (s) + this.url_suffix);
+}s++;
+}}
+var res =  new Array (subs.size ());
+for (var r = 0, rs = subs.size (); r < rs; r++) {
+res[r] = subs.elementAt (r);
+}
+subs.removeAllElements ();
+return res;
+}}if (onlyIfMatches) {
+return null;
+}}if (idstring.indexOf ("|") > -1) {
+idstring = idstring.substring (idstring.lastIndexOf ("|") + 1);
+}return  Clazz.newArray (-1, [idstring, this.url_prefix + idstring + this.url_suffix]);
+} else {
+return  Clazz.newArray (-1, ["", this.url_prefix]);
+}}, "~S,~B");
+Clazz.overrideMethod (c$, "toString", 
+function () {
+return this.label + "|" + this.url_prefix + (this.dynamic ? ("$SEQUENCE_ID" + ((this.regexReplace != null) ? "=" + this.regexReplace + "=$" : "$")) : "") + ((this.url_suffix == null) ? "" : this.url_suffix);
+});
+Clazz.defineMethod (c$, "isDynamic", 
+function () {
+return this.dynamic;
+});
+Clazz.defineMethod (c$, "setLabel", 
+function (newlabel) {
+this.label = newlabel;
+}, "~S");
+});