X-Git-Url: http://source.jalview.org/gitweb/?p=jalviewjs.git;a=blobdiff_plain;f=site%2Fj2s%2Fjalview%2Fworkers%2FAlignCalcWorker.js;h=6636e6d731a0d27381a776b2ed617c6b1e14548a;hp=43b690b7cefe8987cd3627001b4702d2113987aa;hb=b9b7a352eee79b7764c3b09c9d19663075061d8c;hpb=7301a2415adab88038b291fc54caeeb3a5a47a44

diff --git a/site/j2s/jalview/workers/AlignCalcWorker.js b/site/j2s/jalview/workers/AlignCalcWorker.js
index 43b690b..6636e6d 100644
--- a/site/j2s/jalview/workers/AlignCalcWorker.js
+++ b/site/j2s/jalview/workers/AlignCalcWorker.js
@@ -1,54 +1,54 @@
-Clazz.declarePackage ("jalview.workers");
-Clazz.load (["jalview.api.AlignCalcWorkerI", "swingjs.JSThread"], "jalview.workers.AlignCalcWorker", null, function () {
-c$ = Clazz.decorateAsClass (function () {
-this.iFirst = 0;
-this.iLast = 0;
-this.nPer = 2;
-this.started = 0;
-this.alignment = null;
-this.aWidth = 0;
-this.alignViewport = null;
-this.calcMan = null;
-this.ap = null;
-this.ourAnnots = null;
-Clazz.instantialize (this, arguments);
-}, jalview.workers, "AlignCalcWorker", swingjs.JSThread, jalview.api.AlignCalcWorkerI);
-Clazz.makeConstructor (c$, 
-function (alignViewport, alignPanel) {
-Clazz.superConstructor (this, jalview.workers.AlignCalcWorker, [null, "AlignCalcWorker"]);
-this.alignViewport = alignViewport;
-this.calcMan = alignViewport.getCalcManager ();
-this.ap = alignPanel;
-}, "jalview.api.AlignViewportI,jalview.api.AlignmentViewPanel");
-Clazz.defineMethod (c$, "abortAndDestroy", 
-function () {
-if (this.calcMan != null) {
-this.calcMan.workerComplete (this);
-}this.alignViewport = null;
-this.calcMan = null;
-this.ap = null;
-});
-Clazz.overrideMethod (c$, "involves", 
-function (i) {
-return this.ourAnnots != null && this.ourAnnots.contains (i);
-}, "jalview.datamodel.AlignmentAnnotation");
-Clazz.overrideMethod (c$, "removeOurAnnotation", 
-function () {
-if (this.ourAnnots != null && this.alignViewport != null) {
-var alignment = this.alignViewport.getAlignment ();
-{
-for (var aa, $aa = this.ourAnnots.iterator (); $aa.hasNext () && ((aa = $aa.next ()) || true);) {
-alignment.deleteAnnotation (aa, true);
-}
-}}});
-Clazz.defineMethod (c$, "notifyDone", 
-function () {
-if (this.ap != null) {
-this.ap.paintAlignment (true);
-}this.calcMan.workerComplete (this);
-});
-Clazz.defineStatics (c$,
-"LOOP_STANDBY", 3,
-"LOOP_CALCULATE", 4,
-"MS_MAX", 500);
-});
+Clazz.declarePackage ("jalview.workers");
+Clazz.load (["jalview.api.AlignCalcWorkerI", "swingjs.JSThread"], "jalview.workers.AlignCalcWorker", null, function () {
+c$ = Clazz.decorateAsClass (function () {
+this.iFirst = 0;
+this.iLast = 0;
+this.nPer = 2;
+this.started = 0;
+this.alignment = null;
+this.aWidth = 0;
+this.alignViewport = null;
+this.calcMan = null;
+this.ap = null;
+this.ourAnnots = null;
+Clazz.instantialize (this, arguments);
+}, jalview.workers, "AlignCalcWorker", swingjs.JSThread, jalview.api.AlignCalcWorkerI);
+Clazz.makeConstructor (c$, 
+function (alignViewport, alignPanel) {
+Clazz.superConstructor (this, jalview.workers.AlignCalcWorker, [null, "AlignCalcWorker"]);
+this.alignViewport = alignViewport;
+this.calcMan = alignViewport.getCalcManager ();
+this.ap = alignPanel;
+}, "jalview.api.AlignViewportI,jalview.api.AlignmentViewPanel");
+Clazz.defineMethod (c$, "abortAndDestroy", 
+function () {
+if (this.calcMan != null) {
+this.calcMan.workerComplete (this);
+}this.alignViewport = null;
+this.calcMan = null;
+this.ap = null;
+});
+Clazz.overrideMethod (c$, "involves", 
+function (i) {
+return this.ourAnnots != null && this.ourAnnots.contains (i);
+}, "jalview.datamodel.AlignmentAnnotation");
+Clazz.overrideMethod (c$, "removeOurAnnotation", 
+function () {
+if (this.ourAnnots != null && this.alignViewport != null) {
+var alignment = this.alignViewport.getAlignment ();
+{
+for (var aa, $aa = this.ourAnnots.iterator (); $aa.hasNext () && ((aa = $aa.next ()) || true);) {
+alignment.deleteAnnotation (aa, true);
+}
+}}});
+Clazz.defineMethod (c$, "notifyDone", 
+function () {
+if (this.ap != null) {
+this.ap.paintAlignment (true);
+}this.calcMan.workerComplete (this);
+});
+Clazz.defineStatics (c$,
+"LOOP_STANDBY", 3,
+"LOOP_CALCULATE", 4,
+"MS_MAX", 500);
+});