X-Git-Url: http://source.jalview.org/gitweb/?p=jalviewjs.git;a=blobdiff_plain;f=src%2Fjalview%2Fappletgui%2FSequenceRenderer.java;h=b0733e45fb854d1feccf5908c8be21e6b954c120;hp=e2e98cbc2890334a7494dd509b25f94ba2bce324;hb=36d803e4a1f98728e91e80de5fa0b95e0cadb0d4;hpb=5b669b6c1a4f1f29b178283a46bc22fcd66aabad

diff --git a/src/jalview/appletgui/SequenceRenderer.java b/src/jalview/appletgui/SequenceRenderer.java
index e2e98cb..b0733e4 100644
--- a/src/jalview/appletgui/SequenceRenderer.java
+++ b/src/jalview/appletgui/SequenceRenderer.java
@@ -116,7 +116,7 @@ public class SequenceRenderer implements jalview.api.SequenceRenderer
   {
     if (cs != null)
     {
-      resBoxColour = cs.findColour(seq.getCharAt(i), i, seq);
+      resBoxColour = cs.findColourSeq(seq.getCharAt(i), i, seq);
     }
     else if (forOverview && !Comparison.isGap(seq.getCharAt(i)))
     {
@@ -308,7 +308,7 @@ public class SequenceRenderer implements jalview.api.SequenceRenderer
       }
 
       charOffset = (avCharWidth - fm.charWidth(s)) / 2;
-      graphics.drawString(String.valueOf(s), charOffset + avCharWidth
+      awt2swing.Util.drawString(graphics, String.valueOf(s), charOffset + avCharWidth
               * (i - start), y1);
     }
 
@@ -370,7 +370,7 @@ public class SequenceRenderer implements jalview.api.SequenceRenderer
         }
 
         charOffset = (avCharWidth - fm.charWidth(s)) / 2;
-        graphics.drawString(String.valueOf(s), charOffset + x1
+        awt2swing.Util.drawString(graphics, String.valueOf(s), charOffset + x1
                 + avCharWidth * (i - start), y1 + avCharHeight - pady);
       }
     }
@@ -391,7 +391,7 @@ public class SequenceRenderer implements jalview.api.SequenceRenderer
     {
 
       charOffset = (av.getCharWidth() - fm.charWidth(s)) / 2;
-      graphics.drawString(String.valueOf(s), charOffset + x1,
+      awt2swing.Util.drawString(graphics, String.valueOf(s), charOffset + x1,
               (y1 + av.getCharHeight()) - pady);
     }
   }