JAL-1807 Bob's JalviewJS prototype first commit
authorgmungoc <g.m.carstairs@dundee.ac.uk>
Thu, 23 Jul 2015 13:14:52 +0000 (14:14 +0100)
committergmungoc <g.m.carstairs@dundee.ac.uk>
Thu, 23 Jul 2015 13:14:52 +0000 (14:14 +0100)
commit6154cb57a6eac3bb1344b8342495f5bb701ee921
tree53e1fd883d492a4c15012dccb46df1ba8d5389bb
JAL-1807 Bob's JalviewJS prototype first commit
4759 files changed:
.classpath [new file with mode: 0644]
.gitattributes [new file with mode: 0644]
.j2s [new file with mode: 0644]
.project [new file with mode: 0644]
.settings/org.eclipse.jdt.core.prefs [new file with mode: 0644]
bin/MCview/Atom.class [new file with mode: 0644]
bin/MCview/Atom.js [new file with mode: 0644]
bin/MCview/Bond.class [new file with mode: 0644]
bin/MCview/Bond.js [new file with mode: 0644]
bin/MCview/PDBChain.class [new file with mode: 0644]
bin/MCview/PDBChain.js [new file with mode: 0644]
bin/MCview/PDBfile.class [new file with mode: 0644]
bin/MCview/PDBfile.js [new file with mode: 0644]
bin/MCview/Residue.class [new file with mode: 0644]
bin/MCview/Residue.js [new file with mode: 0644]
bin/awt2swing/Button.class [new file with mode: 0644]
bin/awt2swing/Button.js [new file with mode: 0644]
bin/awt2swing/Canvas.class [new file with mode: 0644]
bin/awt2swing/Canvas.js [new file with mode: 0644]
bin/awt2swing/Checkbox.class [new file with mode: 0644]
bin/awt2swing/Checkbox.js [new file with mode: 0644]
bin/awt2swing/CheckboxMenuItem.class [new file with mode: 0644]
bin/awt2swing/CheckboxMenuItem.js [new file with mode: 0644]
bin/awt2swing/Choice.class [new file with mode: 0644]
bin/awt2swing/Choice.js [new file with mode: 0644]
bin/awt2swing/Frame.class [new file with mode: 0644]
bin/awt2swing/Frame.js [new file with mode: 0644]
bin/awt2swing/Label.class [new file with mode: 0644]
bin/awt2swing/Label.js [new file with mode: 0644]
bin/awt2swing/Menu.class [new file with mode: 0644]
bin/awt2swing/Menu.js [new file with mode: 0644]
bin/awt2swing/MenuBar.class [new file with mode: 0644]
bin/awt2swing/MenuBar.js [new file with mode: 0644]
bin/awt2swing/MenuItem.class [new file with mode: 0644]
bin/awt2swing/MenuItem.js [new file with mode: 0644]
bin/awt2swing/Panel.class [new file with mode: 0644]
bin/awt2swing/Panel.js [new file with mode: 0644]
bin/awt2swing/PopupMenu.class [new file with mode: 0644]
bin/awt2swing/PopupMenu.js [new file with mode: 0644]
bin/awt2swing/ScrollPane.class [new file with mode: 0644]
bin/awt2swing/ScrollPane.js [new file with mode: 0644]
bin/awt2swing/Scrollbar.class [new file with mode: 0644]
bin/awt2swing/Scrollbar.js [new file with mode: 0644]
bin/awt2swing/TextArea.class [new file with mode: 0644]
bin/awt2swing/TextArea.js [new file with mode: 0644]
bin/awt2swing/TextField$1.class [new file with mode: 0644]
bin/awt2swing/TextField.class [new file with mode: 0644]
bin/awt2swing/TextField.js [new file with mode: 0644]
bin/com/stevesoft/pat/AmpersandRule.class [new file with mode: 0644]
bin/com/stevesoft/pat/AmpersandRule.js [new file with mode: 0644]
bin/com/stevesoft/pat/Any.class [new file with mode: 0644]
bin/com/stevesoft/pat/Any.js [new file with mode: 0644]
bin/com/stevesoft/pat/BackG.class [new file with mode: 0644]
bin/com/stevesoft/pat/BackG.js [new file with mode: 0644]
bin/com/stevesoft/pat/BackMatch.class [new file with mode: 0644]
bin/com/stevesoft/pat/BackMatch.js [new file with mode: 0644]
bin/com/stevesoft/pat/BackRefRule.class [new file with mode: 0644]
bin/com/stevesoft/pat/BackRefRule.js [new file with mode: 0644]
bin/com/stevesoft/pat/Backup.class [new file with mode: 0644]
bin/com/stevesoft/pat/Backup.js [new file with mode: 0644]
bin/com/stevesoft/pat/BadRangeArgs.class [new file with mode: 0644]
bin/com/stevesoft/pat/BasicStringBufferLike.class [new file with mode: 0644]
bin/com/stevesoft/pat/BasicStringBufferLike.js [new file with mode: 0644]
bin/com/stevesoft/pat/Bits.class [new file with mode: 0644]
bin/com/stevesoft/pat/Bits.js [new file with mode: 0644]
bin/com/stevesoft/pat/Boundary.class [new file with mode: 0644]
bin/com/stevesoft/pat/Boundary.js [new file with mode: 0644]
bin/com/stevesoft/pat/Bracket.class [new file with mode: 0644]
bin/com/stevesoft/pat/Bracket.js [new file with mode: 0644]
bin/com/stevesoft/pat/Branch.class [new file with mode: 0644]
bin/com/stevesoft/pat/CaseMgr.class [new file with mode: 0644]
bin/com/stevesoft/pat/CaseMgr.js [new file with mode: 0644]
bin/com/stevesoft/pat/ChangeRule.class [new file with mode: 0644]
bin/com/stevesoft/pat/ChangeRule.js [new file with mode: 0644]
bin/com/stevesoft/pat/CodeRule.class [new file with mode: 0644]
bin/com/stevesoft/pat/CodeRule.js [new file with mode: 0644]
bin/com/stevesoft/pat/CodeVal.class [new file with mode: 0644]
bin/com/stevesoft/pat/Ctrl.class [new file with mode: 0644]
bin/com/stevesoft/pat/Ctrl.js [new file with mode: 0644]
bin/com/stevesoft/pat/Custom.class [new file with mode: 0644]
bin/com/stevesoft/pat/Custom.js [new file with mode: 0644]
bin/com/stevesoft/pat/CustomEndpoint.class [new file with mode: 0644]
bin/com/stevesoft/pat/CustomEndpoint.js [new file with mode: 0644]
bin/com/stevesoft/pat/DirFileRegex.class [new file with mode: 0644]
bin/com/stevesoft/pat/DirFileRegex.js [new file with mode: 0644]
bin/com/stevesoft/pat/DotMulti.class [new file with mode: 0644]
bin/com/stevesoft/pat/DotMulti.js [new file with mode: 0644]
bin/com/stevesoft/pat/End.class [new file with mode: 0644]
bin/com/stevesoft/pat/End.js [new file with mode: 0644]
bin/com/stevesoft/pat/FastBracket.class [new file with mode: 0644]
bin/com/stevesoft/pat/FastBracket.js [new file with mode: 0644]
bin/com/stevesoft/pat/FastChar.class [new file with mode: 0644]
bin/com/stevesoft/pat/FastMulti.class [new file with mode: 0644]
bin/com/stevesoft/pat/FastMulti.js [new file with mode: 0644]
bin/com/stevesoft/pat/FileRegex.class [new file with mode: 0644]
bin/com/stevesoft/pat/FileRegex.js [new file with mode: 0644]
bin/com/stevesoft/pat/Group.class [new file with mode: 0644]
bin/com/stevesoft/pat/Group.js [new file with mode: 0644]
bin/com/stevesoft/pat/LeftRule.class [new file with mode: 0644]
bin/com/stevesoft/pat/LeftRule.js [new file with mode: 0644]
bin/com/stevesoft/pat/MessageManager.class [new file with mode: 0644]
bin/com/stevesoft/pat/MessageManager.js [new file with mode: 0644]
bin/com/stevesoft/pat/Multi.class [new file with mode: 0644]
bin/com/stevesoft/pat/Multi.js [new file with mode: 0644]
bin/com/stevesoft/pat/MultiMin.class [new file with mode: 0644]
bin/com/stevesoft/pat/MultiMin.js [new file with mode: 0644]
bin/com/stevesoft/pat/Multi_stage2.class [new file with mode: 0644]
bin/com/stevesoft/pat/Multi_stage2.js [new file with mode: 0644]
bin/com/stevesoft/pat/NUnicodeAlpha.class [new file with mode: 0644]
bin/com/stevesoft/pat/NUnicodeCurrency.class [new file with mode: 0644]
bin/com/stevesoft/pat/NUnicodeDigit.class [new file with mode: 0644]
bin/com/stevesoft/pat/NUnicodeMath.class [new file with mode: 0644]
bin/com/stevesoft/pat/NUnicodePunct.class [new file with mode: 0644]
bin/com/stevesoft/pat/NUnicodeW.class [new file with mode: 0644]
bin/com/stevesoft/pat/NUnicodeWhite.class [new file with mode: 0644]
bin/com/stevesoft/pat/NoPattern.class [new file with mode: 0644]
bin/com/stevesoft/pat/NoPattern.js [new file with mode: 0644]
bin/com/stevesoft/pat/NonDirFileRegex.class [new file with mode: 0644]
bin/com/stevesoft/pat/NonDirFileRegex.js [new file with mode: 0644]
bin/com/stevesoft/pat/NotImplementedError.class [new file with mode: 0644]
bin/com/stevesoft/pat/NotImplementedError.js [new file with mode: 0644]
bin/com/stevesoft/pat/NullPattern.class [new file with mode: 0644]
bin/com/stevesoft/pat/NullPattern.js [new file with mode: 0644]
bin/com/stevesoft/pat/NullRule.class [new file with mode: 0644]
bin/com/stevesoft/pat/NullRule.js [new file with mode: 0644]
bin/com/stevesoft/pat/Or.class [new file with mode: 0644]
bin/com/stevesoft/pat/Or.js [new file with mode: 0644]
bin/com/stevesoft/pat/OrMark.class [new file with mode: 0644]
bin/com/stevesoft/pat/OrMark.js [new file with mode: 0644]
bin/com/stevesoft/pat/PartialBuffer.class [new file with mode: 0644]
bin/com/stevesoft/pat/PartialBuffer.js [new file with mode: 0644]
bin/com/stevesoft/pat/Pattern.class [new file with mode: 0644]
bin/com/stevesoft/pat/Pattern.js [new file with mode: 0644]
bin/com/stevesoft/pat/PatternSub.class [new file with mode: 0644]
bin/com/stevesoft/pat/PatternSub.js [new file with mode: 0644]
bin/com/stevesoft/pat/PopRule.class [new file with mode: 0644]
bin/com/stevesoft/pat/PopRule.js [new file with mode: 0644]
bin/com/stevesoft/pat/Prop.class [new file with mode: 0644]
bin/com/stevesoft/pat/Prop.js [new file with mode: 0644]
bin/com/stevesoft/pat/Pthings.class [new file with mode: 0644]
bin/com/stevesoft/pat/Pthings.js [new file with mode: 0644]
bin/com/stevesoft/pat/PushRule.class [new file with mode: 0644]
bin/com/stevesoft/pat/PushRule.js [new file with mode: 0644]
bin/com/stevesoft/pat/RBuffer.class [new file with mode: 0644]
bin/com/stevesoft/pat/RBuffer.js [new file with mode: 0644]
bin/com/stevesoft/pat/Range.class [new file with mode: 0644]
bin/com/stevesoft/pat/Range.js [new file with mode: 0644]
bin/com/stevesoft/pat/RegHolder.class [new file with mode: 0644]
bin/com/stevesoft/pat/RegOpt.class [new file with mode: 0644]
bin/com/stevesoft/pat/RegOpt.js [new file with mode: 0644]
bin/com/stevesoft/pat/RegRes.class [new file with mode: 0644]
bin/com/stevesoft/pat/RegRes.js [new file with mode: 0644]
bin/com/stevesoft/pat/RegSyntax.class [new file with mode: 0644]
bin/com/stevesoft/pat/RegSyntax.js [new file with mode: 0644]
bin/com/stevesoft/pat/RegSyntaxError.class [new file with mode: 0644]
bin/com/stevesoft/pat/RegSyntaxError.js [new file with mode: 0644]
bin/com/stevesoft/pat/Regex.class [new file with mode: 0644]
bin/com/stevesoft/pat/Regex.js [new file with mode: 0644]
bin/com/stevesoft/pat/RegexReader.class [new file with mode: 0644]
bin/com/stevesoft/pat/RegexReader.js [new file with mode: 0644]
bin/com/stevesoft/pat/RegexTokenizer.class [new file with mode: 0644]
bin/com/stevesoft/pat/RegexTokenizer.js [new file with mode: 0644]
bin/com/stevesoft/pat/RegexWriter.class [new file with mode: 0644]
bin/com/stevesoft/pat/RegexWriter.js [new file with mode: 0644]
bin/com/stevesoft/pat/ReplaceRule.class [new file with mode: 0644]
bin/com/stevesoft/pat/ReplaceRule.js [new file with mode: 0644]
bin/com/stevesoft/pat/Replacer.class [new file with mode: 0644]
bin/com/stevesoft/pat/Replacer.js [new file with mode: 0644]
bin/com/stevesoft/pat/RightRule.class [new file with mode: 0644]
bin/com/stevesoft/pat/RightRule.js [new file with mode: 0644]
bin/com/stevesoft/pat/Rthings.class [new file with mode: 0644]
bin/com/stevesoft/pat/Rthings.js [new file with mode: 0644]
bin/com/stevesoft/pat/RuleHolder.class [new file with mode: 0644]
bin/com/stevesoft/pat/RuleHolder.js [new file with mode: 0644]
bin/com/stevesoft/pat/Skip.class [new file with mode: 0644]
bin/com/stevesoft/pat/Skip.js [new file with mode: 0644]
bin/com/stevesoft/pat/Skip2.class [new file with mode: 0644]
bin/com/stevesoft/pat/Skip2.js [new file with mode: 0644]
bin/com/stevesoft/pat/SkipBMH.class [new file with mode: 0644]
bin/com/stevesoft/pat/SkipBMH.js [new file with mode: 0644]
bin/com/stevesoft/pat/Skipped.class [new file with mode: 0644]
bin/com/stevesoft/pat/Skipped.js [new file with mode: 0644]
bin/com/stevesoft/pat/SpecialRule.class [new file with mode: 0644]
bin/com/stevesoft/pat/SpecialRule.js [new file with mode: 0644]
bin/com/stevesoft/pat/Start.class [new file with mode: 0644]
bin/com/stevesoft/pat/Start.js [new file with mode: 0644]
bin/com/stevesoft/pat/StrPos.class [new file with mode: 0644]
bin/com/stevesoft/pat/StrPos.js [new file with mode: 0644]
bin/com/stevesoft/pat/StringBufferLike.class [new file with mode: 0644]
bin/com/stevesoft/pat/StringBufferLike.js [new file with mode: 0644]
bin/com/stevesoft/pat/StringLike.class [new file with mode: 0644]
bin/com/stevesoft/pat/StringLike.js [new file with mode: 0644]
bin/com/stevesoft/pat/StringRule.class [new file with mode: 0644]
bin/com/stevesoft/pat/StringRule.js [new file with mode: 0644]
bin/com/stevesoft/pat/SubMark.class [new file with mode: 0644]
bin/com/stevesoft/pat/SubMark.js [new file with mode: 0644]
bin/com/stevesoft/pat/TransPat.class [new file with mode: 0644]
bin/com/stevesoft/pat/TransPat.js [new file with mode: 0644]
bin/com/stevesoft/pat/TransRepRule.class [new file with mode: 0644]
bin/com/stevesoft/pat/Transformer.class [new file with mode: 0644]
bin/com/stevesoft/pat/Transformer.js [new file with mode: 0644]
bin/com/stevesoft/pat/UniValidator.class [new file with mode: 0644]
bin/com/stevesoft/pat/UniValidator.js [new file with mode: 0644]
bin/com/stevesoft/pat/UnicodeAlpha.class [new file with mode: 0644]
bin/com/stevesoft/pat/UnicodeCurrency.class [new file with mode: 0644]
bin/com/stevesoft/pat/UnicodeDigit.class [new file with mode: 0644]
bin/com/stevesoft/pat/UnicodeLower.class [new file with mode: 0644]
bin/com/stevesoft/pat/UnicodeMath.class [new file with mode: 0644]
bin/com/stevesoft/pat/UnicodePunct.class [new file with mode: 0644]
bin/com/stevesoft/pat/UnicodeUpper.class [new file with mode: 0644]
bin/com/stevesoft/pat/UnicodeW.class [new file with mode: 0644]
bin/com/stevesoft/pat/UnicodeWhite.class [new file with mode: 0644]
bin/com/stevesoft/pat/Util.class [new file with mode: 0644]
bin/com/stevesoft/pat/Util.js [new file with mode: 0644]
bin/com/stevesoft/pat/Validator.class [new file with mode: 0644]
bin/com/stevesoft/pat/Validator.js [new file with mode: 0644]
bin/com/stevesoft/pat/WantMoreTextReplaceRule.class [new file with mode: 0644]
bin/com/stevesoft/pat/WantMoreTextReplaceRule.js [new file with mode: 0644]
bin/com/stevesoft/pat/lookAhead.class [new file with mode: 0644]
bin/com/stevesoft/pat/lookAhead.js [new file with mode: 0644]
bin/com/stevesoft/pat/oneChar.class [new file with mode: 0644]
bin/com/stevesoft/pat/oneChar.js [new file with mode: 0644]
bin/com/stevesoft/pat/package.js [new file with mode: 0644]
bin/com/stevesoft/pat/parsePerl.class [new file with mode: 0644]
bin/com/stevesoft/pat/parsePerl.js [new file with mode: 0644]
bin/com/stevesoft/pat/patInf.class [new file with mode: 0644]
bin/com/stevesoft/pat/patInf.js [new file with mode: 0644]
bin/com/stevesoft/pat/patInt.class [new file with mode: 0644]
bin/com/stevesoft/pat/patInt.js [new file with mode: 0644]
bin/com/stevesoft/pat/wrap/CharArrayBufferWrap.class [new file with mode: 0644]
bin/com/stevesoft/pat/wrap/CharArrayBufferWrap.js [new file with mode: 0644]
bin/com/stevesoft/pat/wrap/CharArrayWrap.class [new file with mode: 0644]
bin/com/stevesoft/pat/wrap/CharArrayWrap.js [new file with mode: 0644]
bin/com/stevesoft/pat/wrap/RandomAccessFileWrap.class [new file with mode: 0644]
bin/com/stevesoft/pat/wrap/RandomAccessFileWrap.js [new file with mode: 0644]
bin/com/stevesoft/pat/wrap/StringBufferWrap.class [new file with mode: 0644]
bin/com/stevesoft/pat/wrap/StringBufferWrap.js [new file with mode: 0644]
bin/com/stevesoft/pat/wrap/StringWrap.class [new file with mode: 0644]
bin/com/stevesoft/pat/wrap/StringWrap.js [new file with mode: 0644]
bin/com/stevesoft/pat/wrap/WriterWrap.class [new file with mode: 0644]
bin/com/stevesoft/pat/wrap/WriterWrap.js [new file with mode: 0644]
bin/fr/orsay/lri/varna/models/rna/RNA.class [new file with mode: 0644]
bin/fr/orsay/lri/varna/models/rna/RNA.js [new file with mode: 0644]
bin/jalview/analysis/AAFrequency.class [new file with mode: 0644]
bin/jalview/analysis/AAFrequency.js [new file with mode: 0644]
bin/jalview/analysis/AlignSeq.class [new file with mode: 0644]
bin/jalview/analysis/AlignSeq.js [new file with mode: 0644]
bin/jalview/analysis/AlignmentAnnotationUtils.class [new file with mode: 0644]
bin/jalview/analysis/AlignmentAnnotationUtils.js [new file with mode: 0644]
bin/jalview/analysis/AlignmentSorter.class [new file with mode: 0644]
bin/jalview/analysis/AlignmentSorter.js [new file with mode: 0644]
bin/jalview/analysis/AlignmentUtils.class [new file with mode: 0644]
bin/jalview/analysis/AlignmentUtils.js [new file with mode: 0644]
bin/jalview/analysis/AnnotationSorter$1.class [new file with mode: 0644]
bin/jalview/analysis/AnnotationSorter$2.class [new file with mode: 0644]
bin/jalview/analysis/AnnotationSorter$3.class [new file with mode: 0644]
bin/jalview/analysis/AnnotationSorter$SequenceAnnotationOrder.class [new file with mode: 0644]
bin/jalview/analysis/AnnotationSorter.class [new file with mode: 0644]
bin/jalview/analysis/AnnotationSorter.js [new file with mode: 0644]
bin/jalview/analysis/Cluster.class [new file with mode: 0644]
bin/jalview/analysis/CodingUtils.class [new file with mode: 0644]
bin/jalview/analysis/CodingUtils.js [new file with mode: 0644]
bin/jalview/analysis/CodonComparator.class [new file with mode: 0644]
bin/jalview/analysis/CodonComparator.js [new file with mode: 0644]
bin/jalview/analysis/Conservation.class [new file with mode: 0644]
bin/jalview/analysis/Conservation.js [new file with mode: 0644]
bin/jalview/analysis/Dna.class [new file with mode: 0644]
bin/jalview/analysis/Dna.js [new file with mode: 0644]
bin/jalview/analysis/Finder.class [new file with mode: 0644]
bin/jalview/analysis/Finder.js [new file with mode: 0644]
bin/jalview/analysis/Grouping.class [new file with mode: 0644]
bin/jalview/analysis/Grouping.js [new file with mode: 0644]
bin/jalview/analysis/NJTree$1.class [new file with mode: 0644]
bin/jalview/analysis/NJTree.class [new file with mode: 0644]
bin/jalview/analysis/NJTree.js [new file with mode: 0644]
bin/jalview/analysis/PCA$1.class [new file with mode: 0644]
bin/jalview/analysis/PCA.class [new file with mode: 0644]
bin/jalview/analysis/PCA.js [new file with mode: 0644]
bin/jalview/analysis/ParseProperties.class [new file with mode: 0644]
bin/jalview/analysis/ParseProperties.js [new file with mode: 0644]
bin/jalview/analysis/Rna.class [new file with mode: 0644]
bin/jalview/analysis/Rna.js [new file with mode: 0644]
bin/jalview/analysis/SecStrConsensus$SimpleBP.class [new file with mode: 0644]
bin/jalview/analysis/SecStrConsensus.class [new file with mode: 0644]
bin/jalview/analysis/SecStrConsensus.js [new file with mode: 0644]
bin/jalview/analysis/SeqsetUtils.class [new file with mode: 0644]
bin/jalview/analysis/SeqsetUtils.js [new file with mode: 0644]
bin/jalview/analysis/SequenceIdMatcher$SeqIdName.class [new file with mode: 0644]
bin/jalview/analysis/SequenceIdMatcher.class [new file with mode: 0644]
bin/jalview/analysis/SequenceIdMatcher.js [new file with mode: 0644]
bin/jalview/analysis/StructureFrequency.class [new file with mode: 0644]
bin/jalview/analysis/StructureFrequency.js [new file with mode: 0644]
bin/jalview/analysis/WUSSParseException.class [new file with mode: 0644]
bin/jalview/analysis/WUSSParseException.js [new file with mode: 0644]
bin/jalview/analysis/package.js [new file with mode: 0644]
bin/jalview/analysis/scoremodels/FeatureScoreModel.class [new file with mode: 0644]
bin/jalview/analysis/scoremodels/FeatureScoreModel.js [new file with mode: 0644]
bin/jalview/analysis/scoremodels/PIDScoreModel.class [new file with mode: 0644]
bin/jalview/analysis/scoremodels/PIDScoreModel.js [new file with mode: 0644]
bin/jalview/analysis/scoremodels/PairwiseSeqScoreModel.class [new file with mode: 0644]
bin/jalview/analysis/scoremodels/PairwiseSeqScoreModel.js [new file with mode: 0644]
bin/jalview/analysis/scoremodels/SWScoreModel.class [new file with mode: 0644]
bin/jalview/analysis/scoremodels/SWScoreModel.js [new file with mode: 0644]
bin/jalview/api/AlignCalcManagerI.class [new file with mode: 0644]
bin/jalview/api/AlignCalcManagerI.js [new file with mode: 0644]
bin/jalview/api/AlignCalcWorkerI.class [new file with mode: 0644]
bin/jalview/api/AlignCalcWorkerI.js [new file with mode: 0644]
bin/jalview/api/AlignExportSettingI.class [new file with mode: 0644]
bin/jalview/api/AlignExportSettingI.js [new file with mode: 0644]
bin/jalview/api/AlignViewControllerGuiI.class [new file with mode: 0644]
bin/jalview/api/AlignViewControllerGuiI.js [new file with mode: 0644]
bin/jalview/api/AlignViewControllerI.class [new file with mode: 0644]
bin/jalview/api/AlignViewControllerI.js [new file with mode: 0644]
bin/jalview/api/AlignViewportI.class [new file with mode: 0644]
bin/jalview/api/AlignViewportI.js [new file with mode: 0644]
bin/jalview/api/AlignmentViewPanel.class [new file with mode: 0644]
bin/jalview/api/AlignmentViewPanel.js [new file with mode: 0644]
bin/jalview/api/ComplexAlignFile.class [new file with mode: 0644]
bin/jalview/api/ComplexAlignFile.js [new file with mode: 0644]
bin/jalview/api/FeatureRenderer.class [new file with mode: 0644]
bin/jalview/api/FeatureRenderer.js [new file with mode: 0644]
bin/jalview/api/FeatureSettingsControllerI.class [new file with mode: 0644]
bin/jalview/api/FeatureSettingsControllerI.js [new file with mode: 0644]
bin/jalview/api/FeatureSettingsModelI.class [new file with mode: 0644]
bin/jalview/api/FeatureSettingsModelI.js [new file with mode: 0644]
bin/jalview/api/FeaturesDisplayedI.class [new file with mode: 0644]
bin/jalview/api/FeaturesDisplayedI.js [new file with mode: 0644]
bin/jalview/api/OOMHandlerI.class [new file with mode: 0644]
bin/jalview/api/OOMHandlerI.js [new file with mode: 0644]
bin/jalview/api/RotatableCanvasI.class [new file with mode: 0644]
bin/jalview/api/RotatableCanvasI.js [new file with mode: 0644]
bin/jalview/api/SequenceRenderer.class [new file with mode: 0644]
bin/jalview/api/SequenceRenderer.js [new file with mode: 0644]
bin/jalview/api/SequenceStructureBinding.class [new file with mode: 0644]
bin/jalview/api/SequenceStructureBinding.js [new file with mode: 0644]
bin/jalview/api/SplitContainerI.class [new file with mode: 0644]
bin/jalview/api/SplitContainerI.js [new file with mode: 0644]
bin/jalview/api/StructureSelectionManagerProvider.class [new file with mode: 0644]
bin/jalview/api/StructureSelectionManagerProvider.js [new file with mode: 0644]
bin/jalview/api/ViewStyleI.class [new file with mode: 0644]
bin/jalview/api/ViewStyleI.js [new file with mode: 0644]
bin/jalview/api/analysis/ScoreModelI.class [new file with mode: 0644]
bin/jalview/api/analysis/ScoreModelI.js [new file with mode: 0644]
bin/jalview/api/analysis/ViewBasedAnalysisI.class [new file with mode: 0644]
bin/jalview/api/analysis/ViewBasedAnalysisI.js [new file with mode: 0644]
bin/jalview/api/structures/JalviewStructureDisplayI.class [new file with mode: 0644]
bin/jalview/api/structures/JalviewStructureDisplayI.js [new file with mode: 0644]
bin/jalview/appletgui/APopupMenu$1.class [new file with mode: 0644]
bin/jalview/appletgui/APopupMenu$2.class [new file with mode: 0644]
bin/jalview/appletgui/APopupMenu$3.class [new file with mode: 0644]
bin/jalview/appletgui/APopupMenu.class [new file with mode: 0644]
bin/jalview/appletgui/APopupMenu.js [new file with mode: 0644]
bin/jalview/appletgui/AlignFrame$1.class [new file with mode: 0644]
bin/jalview/appletgui/AlignFrame$1AboutPanel.class [new file with mode: 0644]
bin/jalview/appletgui/AlignFrame$2.class [new file with mode: 0644]
bin/jalview/appletgui/AlignFrame$3.class [new file with mode: 0644]
bin/jalview/appletgui/AlignFrame$4.class [new file with mode: 0644]
bin/jalview/appletgui/AlignFrame$5.class [new file with mode: 0644]
bin/jalview/appletgui/AlignFrame.class [new file with mode: 0644]
bin/jalview/appletgui/AlignFrame.js [new file with mode: 0644]
bin/jalview/appletgui/AlignViewport.class [new file with mode: 0644]
bin/jalview/appletgui/AlignViewport.js [new file with mode: 0644]
bin/jalview/appletgui/AlignmentPanel$1.class [new file with mode: 0644]
bin/jalview/appletgui/AlignmentPanel$2.class [new file with mode: 0644]
bin/jalview/appletgui/AlignmentPanel.class [new file with mode: 0644]
bin/jalview/appletgui/AlignmentPanel.js [new file with mode: 0644]
bin/jalview/appletgui/AnnotationColourChooser.class [new file with mode: 0644]
bin/jalview/appletgui/AnnotationColourChooser.js [new file with mode: 0644]
bin/jalview/appletgui/AnnotationColumnChooser$1.class [new file with mode: 0644]
bin/jalview/appletgui/AnnotationColumnChooser$FurtherActionPanel.class [new file with mode: 0644]
bin/jalview/appletgui/AnnotationColumnChooser$SearchPanel$1.class [new file with mode: 0644]
bin/jalview/appletgui/AnnotationColumnChooser$SearchPanel.class [new file with mode: 0644]
bin/jalview/appletgui/AnnotationColumnChooser$StructureFilterPanel.class [new file with mode: 0644]
bin/jalview/appletgui/AnnotationColumnChooser.class [new file with mode: 0644]
bin/jalview/appletgui/AnnotationColumnChooser.js [new file with mode: 0644]
bin/jalview/appletgui/AnnotationLabels$1.class [new file with mode: 0644]
bin/jalview/appletgui/AnnotationLabels$2.class [new file with mode: 0644]
bin/jalview/appletgui/AnnotationLabels$3.class [new file with mode: 0644]
bin/jalview/appletgui/AnnotationLabels$4.class [new file with mode: 0644]
bin/jalview/appletgui/AnnotationLabels$5.class [new file with mode: 0644]
bin/jalview/appletgui/AnnotationLabels$6.class [new file with mode: 0644]
bin/jalview/appletgui/AnnotationLabels$7.class [new file with mode: 0644]
bin/jalview/appletgui/AnnotationLabels$8.class [new file with mode: 0644]
bin/jalview/appletgui/AnnotationLabels.class [new file with mode: 0644]
bin/jalview/appletgui/AnnotationLabels.js [new file with mode: 0644]
bin/jalview/appletgui/AnnotationPanel.class [new file with mode: 0644]
bin/jalview/appletgui/AnnotationPanel.js [new file with mode: 0644]
bin/jalview/appletgui/AnnotationRowFilter.class [new file with mode: 0644]
bin/jalview/appletgui/AnnotationRowFilter.js [new file with mode: 0644]
bin/jalview/appletgui/AppletJmol$RenderPanel.class [new file with mode: 0644]
bin/jalview/appletgui/AppletJmol.class [new file with mode: 0644]
bin/jalview/appletgui/AppletJmol.js [new file with mode: 0644]
bin/jalview/appletgui/AppletJmolBinding.class [new file with mode: 0644]
bin/jalview/appletgui/AppletJmolBinding.js [new file with mode: 0644]
bin/jalview/appletgui/CutAndPasteTransfer.class [new file with mode: 0644]
bin/jalview/appletgui/CutAndPasteTransfer.js [new file with mode: 0644]
bin/jalview/appletgui/EditNameDialog.class [new file with mode: 0644]
bin/jalview/appletgui/EditNameDialog.js [new file with mode: 0644]
bin/jalview/appletgui/EmbmenuFrame.class [new file with mode: 0644]
bin/jalview/appletgui/EmbmenuFrame.js [new file with mode: 0644]
bin/jalview/appletgui/ExtJmol.class [new file with mode: 0644]
bin/jalview/appletgui/ExtJmol.js [new file with mode: 0644]
bin/jalview/appletgui/FeatureColourChooser.class [new file with mode: 0644]
bin/jalview/appletgui/FeatureColourChooser.js [new file with mode: 0644]
bin/jalview/appletgui/FeatureRenderer$1.class [new file with mode: 0644]
bin/jalview/appletgui/FeatureRenderer$2.class [new file with mode: 0644]
bin/jalview/appletgui/FeatureRenderer$3.class [new file with mode: 0644]
bin/jalview/appletgui/FeatureRenderer$FeatureColourPanel.class [new file with mode: 0644]
bin/jalview/appletgui/FeatureRenderer.class [new file with mode: 0644]
bin/jalview/appletgui/FeatureRenderer.js [new file with mode: 0644]
bin/jalview/appletgui/FeatureSettings$1.class [new file with mode: 0644]
bin/jalview/appletgui/FeatureSettings$2.class [new file with mode: 0644]
bin/jalview/appletgui/FeatureSettings$3.class [new file with mode: 0644]
bin/jalview/appletgui/FeatureSettings$4.class [new file with mode: 0644]
bin/jalview/appletgui/FeatureSettings$5.class [new file with mode: 0644]
bin/jalview/appletgui/FeatureSettings$MyCheckbox.class [new file with mode: 0644]
bin/jalview/appletgui/FeatureSettings.class [new file with mode: 0644]
bin/jalview/appletgui/FeatureSettings.js [new file with mode: 0644]
bin/jalview/appletgui/Finder$1.class [new file with mode: 0644]
bin/jalview/appletgui/Finder$2.class [new file with mode: 0644]
bin/jalview/appletgui/Finder.class [new file with mode: 0644]
bin/jalview/appletgui/Finder.js [new file with mode: 0644]
bin/jalview/appletgui/FontChooser$1.class [new file with mode: 0644]
bin/jalview/appletgui/FontChooser$2.class [new file with mode: 0644]
bin/jalview/appletgui/FontChooser.class [new file with mode: 0644]
bin/jalview/appletgui/FontChooser.js [new file with mode: 0644]
bin/jalview/appletgui/IdCanvas.class [new file with mode: 0644]
bin/jalview/appletgui/IdCanvas.js [new file with mode: 0644]
bin/jalview/appletgui/IdPanel$ScrollThread.class [new file with mode: 0644]
bin/jalview/appletgui/IdPanel.class [new file with mode: 0644]
bin/jalview/appletgui/IdPanel.js [new file with mode: 0644]
bin/jalview/appletgui/IdwidthAdjuster.class [new file with mode: 0644]
bin/jalview/appletgui/IdwidthAdjuster.js [new file with mode: 0644]
bin/jalview/appletgui/JVDialog.class [new file with mode: 0644]
bin/jalview/appletgui/JVDialog.js [new file with mode: 0644]
bin/jalview/appletgui/OverviewPanel$1.class [new file with mode: 0644]
bin/jalview/appletgui/OverviewPanel.class [new file with mode: 0644]
bin/jalview/appletgui/OverviewPanel.js [new file with mode: 0644]
bin/jalview/appletgui/PCAPanel.class [new file with mode: 0644]
bin/jalview/appletgui/PCAPanel.js [new file with mode: 0644]
bin/jalview/appletgui/PaintRefresher.class [new file with mode: 0644]
bin/jalview/appletgui/PaintRefresher.js [new file with mode: 0644]
bin/jalview/appletgui/PairwiseAlignPanel.class [new file with mode: 0644]
bin/jalview/appletgui/PairwiseAlignPanel.js [new file with mode: 0644]
bin/jalview/appletgui/RedundancyPanel$1.class [new file with mode: 0644]
bin/jalview/appletgui/RedundancyPanel.class [new file with mode: 0644]
bin/jalview/appletgui/RedundancyPanel.js [new file with mode: 0644]
bin/jalview/appletgui/RotatableCanvas.class [new file with mode: 0644]
bin/jalview/appletgui/RotatableCanvas.js [new file with mode: 0644]
bin/jalview/appletgui/ScalePanel$1.class [new file with mode: 0644]
bin/jalview/appletgui/ScalePanel$2.class [new file with mode: 0644]
bin/jalview/appletgui/ScalePanel$3.class [new file with mode: 0644]
bin/jalview/appletgui/ScalePanel.class [new file with mode: 0644]
bin/jalview/appletgui/ScalePanel.js [new file with mode: 0644]
bin/jalview/appletgui/SeqCanvas.class [new file with mode: 0644]
bin/jalview/appletgui/SeqCanvas.js [new file with mode: 0644]
bin/jalview/appletgui/SeqPanel$ScrollThread.class [new file with mode: 0644]
bin/jalview/appletgui/SeqPanel.class [new file with mode: 0644]
bin/jalview/appletgui/SeqPanel.js [new file with mode: 0644]
bin/jalview/appletgui/SequenceRenderer.class [new file with mode: 0644]
bin/jalview/appletgui/SequenceRenderer.js [new file with mode: 0644]
bin/jalview/appletgui/SliderPanel$1.class [new file with mode: 0644]
bin/jalview/appletgui/SliderPanel$2.class [new file with mode: 0644]
bin/jalview/appletgui/SliderPanel.class [new file with mode: 0644]
bin/jalview/appletgui/SliderPanel.js [new file with mode: 0644]
bin/jalview/appletgui/SplitFrame.class [new file with mode: 0644]
bin/jalview/appletgui/SplitFrame.js [new file with mode: 0644]
bin/jalview/appletgui/TitledPanel$1.class [new file with mode: 0644]
bin/jalview/appletgui/TitledPanel.class [new file with mode: 0644]
bin/jalview/appletgui/TitledPanel.js [new file with mode: 0644]
bin/jalview/appletgui/Tooltip.class [new file with mode: 0644]
bin/jalview/appletgui/Tooltip.js [new file with mode: 0644]
bin/jalview/appletgui/TreeCanvas.class [new file with mode: 0644]
bin/jalview/appletgui/TreeCanvas.js [new file with mode: 0644]
bin/jalview/appletgui/TreePanel$TreeLoader.class [new file with mode: 0644]
bin/jalview/appletgui/TreePanel.class [new file with mode: 0644]
bin/jalview/appletgui/TreePanel.js [new file with mode: 0644]
bin/jalview/appletgui/UserDefinedColours$1.class [new file with mode: 0644]
bin/jalview/appletgui/UserDefinedColours.class [new file with mode: 0644]
bin/jalview/appletgui/UserDefinedColours.js [new file with mode: 0644]
bin/jalview/bin/Cache$Log.class [new file with mode: 0644]
bin/jalview/bin/Cache.class [new file with mode: 0644]
bin/jalview/bin/Cache.js [new file with mode: 0644]
bin/jalview/bin/JalviewLite$1.class [new file with mode: 0644]
bin/jalview/bin/JalviewLite$10.class [new file with mode: 0644]
bin/jalview/bin/JalviewLite$2.class [new file with mode: 0644]
bin/jalview/bin/JalviewLite$3.class [new file with mode: 0644]
bin/jalview/bin/JalviewLite$4.class [new file with mode: 0644]
bin/jalview/bin/JalviewLite$5.class [new file with mode: 0644]
bin/jalview/bin/JalviewLite$6.class [new file with mode: 0644]
bin/jalview/bin/JalviewLite$7.class [new file with mode: 0644]
bin/jalview/bin/JalviewLite$8.class [new file with mode: 0644]
bin/jalview/bin/JalviewLite$9.class [new file with mode: 0644]
bin/jalview/bin/JalviewLite$LoadJmolThread.class [new file with mode: 0644]
bin/jalview/bin/JalviewLite$LoadingThread.class [new file with mode: 0644]
bin/jalview/bin/JalviewLite.class [new file with mode: 0644]
bin/jalview/bin/JalviewLite.js [new file with mode: 0644]
bin/jalview/commands/ChangeCaseCommand.class [new file with mode: 0644]
bin/jalview/commands/ChangeCaseCommand.js [new file with mode: 0644]
bin/jalview/commands/CommandI.class [new file with mode: 0644]
bin/jalview/commands/CommandI.js [new file with mode: 0644]
bin/jalview/commands/EditCommand$Action.class [new file with mode: 0644]
bin/jalview/commands/EditCommand$Edit.class [new file with mode: 0644]
bin/jalview/commands/EditCommand.class [new file with mode: 0644]
bin/jalview/commands/EditCommand.js [new file with mode: 0644]
bin/jalview/commands/OrderCommand.class [new file with mode: 0644]
bin/jalview/commands/OrderCommand.js [new file with mode: 0644]
bin/jalview/commands/RemoveGapColCommand.class [new file with mode: 0644]
bin/jalview/commands/RemoveGapColCommand.js [new file with mode: 0644]
bin/jalview/commands/RemoveGapsCommand.class [new file with mode: 0644]
bin/jalview/commands/RemoveGapsCommand.js [new file with mode: 0644]
bin/jalview/commands/SlideSequencesCommand.class [new file with mode: 0644]
bin/jalview/commands/SlideSequencesCommand.js [new file with mode: 0644]
bin/jalview/commands/TrimRegionCommand.class [new file with mode: 0644]
bin/jalview/commands/TrimRegionCommand.js [new file with mode: 0644]
bin/jalview/controller/AlignViewController.class [new file with mode: 0644]
bin/jalview/controller/AlignViewController.js [new file with mode: 0644]
bin/jalview/controller/FeatureSettingsController.class [new file with mode: 0644]
bin/jalview/controller/FeatureSettingsController.js [new file with mode: 0644]
bin/jalview/controller/FeatureSettingsControllerGuiI.class [new file with mode: 0644]
bin/jalview/controller/FeatureSettingsControllerGuiI.js [new file with mode: 0644]
bin/jalview/datamodel/ASequence.class [new file with mode: 0644]
bin/jalview/datamodel/ASequence.js [new file with mode: 0644]
bin/jalview/datamodel/ASequenceI.class [new file with mode: 0644]
bin/jalview/datamodel/ASequenceI.js [new file with mode: 0644]
bin/jalview/datamodel/AlignedCodon.class [new file with mode: 0644]
bin/jalview/datamodel/AlignedCodon.js [new file with mode: 0644]
bin/jalview/datamodel/AlignedCodonFrame.class [new file with mode: 0644]
bin/jalview/datamodel/AlignedCodonFrame.js [new file with mode: 0644]
bin/jalview/datamodel/Alignment.class [new file with mode: 0644]
bin/jalview/datamodel/Alignment.js [new file with mode: 0644]
bin/jalview/datamodel/AlignmentAnnotation$AnnotCharSequence.class [new file with mode: 0644]
bin/jalview/datamodel/AlignmentAnnotation.class [new file with mode: 0644]
bin/jalview/datamodel/AlignmentAnnotation.js [new file with mode: 0644]
bin/jalview/datamodel/AlignmentI.class [new file with mode: 0644]
bin/jalview/datamodel/AlignmentI.js [new file with mode: 0644]
bin/jalview/datamodel/AlignmentOrder.class [new file with mode: 0644]
bin/jalview/datamodel/AlignmentOrder.js [new file with mode: 0644]
bin/jalview/datamodel/AlignmentView$ScGroup.class [new file with mode: 0644]
bin/jalview/datamodel/AlignmentView.class [new file with mode: 0644]
bin/jalview/datamodel/AlignmentView.js [new file with mode: 0644]
bin/jalview/datamodel/AnnotatedCollectionI.class [new file with mode: 0644]
bin/jalview/datamodel/AnnotatedCollectionI.js [new file with mode: 0644]
bin/jalview/datamodel/Annotation.class [new file with mode: 0644]
bin/jalview/datamodel/Annotation.js [new file with mode: 0644]
bin/jalview/datamodel/BinaryNode.class [new file with mode: 0644]
bin/jalview/datamodel/BinaryNode.js [new file with mode: 0644]
bin/jalview/datamodel/BinarySequence$InvalidSequenceTypeException.class [new file with mode: 0644]
bin/jalview/datamodel/BinarySequence.class [new file with mode: 0644]
bin/jalview/datamodel/BinarySequence.js [new file with mode: 0644]
bin/jalview/datamodel/CigarArray.class [new file with mode: 0644]
bin/jalview/datamodel/CigarArray.js [new file with mode: 0644]
bin/jalview/datamodel/CigarBase.class [new file with mode: 0644]
bin/jalview/datamodel/CigarBase.js [new file with mode: 0644]
bin/jalview/datamodel/CigarCigar.class [new file with mode: 0644]
bin/jalview/datamodel/CigarCigar.js [new file with mode: 0644]
bin/jalview/datamodel/CigarSimple.class [new file with mode: 0644]
bin/jalview/datamodel/CigarSimple.js [new file with mode: 0644]
bin/jalview/datamodel/ColumnSelection.class [new file with mode: 0644]
bin/jalview/datamodel/ColumnSelection.js [new file with mode: 0644]
bin/jalview/datamodel/DBRefEntry.class [new file with mode: 0644]
bin/jalview/datamodel/DBRefEntry.js [new file with mode: 0644]
bin/jalview/datamodel/DBRefSource.class [new file with mode: 0644]
bin/jalview/datamodel/DBRefSource.js [new file with mode: 0644]
bin/jalview/datamodel/FeatureProperties.class [new file with mode: 0644]
bin/jalview/datamodel/FeatureProperties.js [new file with mode: 0644]
bin/jalview/datamodel/GraphLine.class [new file with mode: 0644]
bin/jalview/datamodel/GraphLine.js [new file with mode: 0644]
bin/jalview/datamodel/HiddenSequences.class [new file with mode: 0644]
bin/jalview/datamodel/HiddenSequences.js [new file with mode: 0644]
bin/jalview/datamodel/IncompleteCodonException.class [new file with mode: 0644]
bin/jalview/datamodel/IncompleteCodonException.js [new file with mode: 0644]
bin/jalview/datamodel/Mapping$AlignedCodonIterator.class [new file with mode: 0644]
bin/jalview/datamodel/Mapping.class [new file with mode: 0644]
bin/jalview/datamodel/Mapping.js [new file with mode: 0644]
bin/jalview/datamodel/NodeTransformI.class [new file with mode: 0644]
bin/jalview/datamodel/NodeTransformI.js [new file with mode: 0644]
bin/jalview/datamodel/PDBEntry$Type.class [new file with mode: 0644]
bin/jalview/datamodel/PDBEntry.class [new file with mode: 0644]
bin/jalview/datamodel/PDBEntry.js [new file with mode: 0644]
bin/jalview/datamodel/Provenance.class [new file with mode: 0644]
bin/jalview/datamodel/Provenance.js [new file with mode: 0644]
bin/jalview/datamodel/ProvenanceEntry.class [new file with mode: 0644]
bin/jalview/datamodel/ProvenanceEntry.js [new file with mode: 0644]
bin/jalview/datamodel/RnaViewerModel.class [new file with mode: 0644]
bin/jalview/datamodel/RnaViewerModel.js [new file with mode: 0644]
bin/jalview/datamodel/SearchResults$Match.class [new file with mode: 0644]
bin/jalview/datamodel/SearchResults.class [new file with mode: 0644]
bin/jalview/datamodel/SearchResults.js [new file with mode: 0644]
bin/jalview/datamodel/SecondaryStructureAnnotation.class [new file with mode: 0644]
bin/jalview/datamodel/SecondaryStructureAnnotation.js [new file with mode: 0644]
bin/jalview/datamodel/SeqCigar.class [new file with mode: 0644]
bin/jalview/datamodel/SeqCigar.js [new file with mode: 0644]
bin/jalview/datamodel/Sequence.class [new file with mode: 0644]
bin/jalview/datamodel/Sequence.js [new file with mode: 0644]
bin/jalview/datamodel/SequenceCollectionI.class [new file with mode: 0644]
bin/jalview/datamodel/SequenceCollectionI.js [new file with mode: 0644]
bin/jalview/datamodel/SequenceDummy.class [new file with mode: 0644]
bin/jalview/datamodel/SequenceDummy.js [new file with mode: 0644]
bin/jalview/datamodel/SequenceFeature.class [new file with mode: 0644]
bin/jalview/datamodel/SequenceFeature.js [new file with mode: 0644]
bin/jalview/datamodel/SequenceGroup.class [new file with mode: 0644]
bin/jalview/datamodel/SequenceGroup.js [new file with mode: 0644]
bin/jalview/datamodel/SequenceI.class [new file with mode: 0644]
bin/jalview/datamodel/SequenceI.js [new file with mode: 0644]
bin/jalview/datamodel/SequenceNode.class [new file with mode: 0644]
bin/jalview/datamodel/SequenceNode.js [new file with mode: 0644]
bin/jalview/datamodel/SequencePoint.class [new file with mode: 0644]
bin/jalview/datamodel/SequencePoint.js [new file with mode: 0644]
bin/jalview/datamodel/StructureViewerModel$StructureData.class [new file with mode: 0644]
bin/jalview/datamodel/StructureViewerModel.class [new file with mode: 0644]
bin/jalview/datamodel/StructureViewerModel.js [new file with mode: 0644]
bin/jalview/datamodel/UniprotEntry.class [new file with mode: 0644]
bin/jalview/datamodel/UniprotEntry.js [new file with mode: 0644]
bin/jalview/datamodel/UniprotFile.class [new file with mode: 0644]
bin/jalview/datamodel/UniprotFile.js [new file with mode: 0644]
bin/jalview/datamodel/UniprotProteinName.class [new file with mode: 0644]
bin/jalview/datamodel/UniprotProteinName.js [new file with mode: 0644]
bin/jalview/datamodel/UniprotSequence.class [new file with mode: 0644]
bin/jalview/datamodel/UniprotSequence.js [new file with mode: 0644]
bin/jalview/ext/jmol/JmolCommands.class [new file with mode: 0644]
bin/jalview/ext/jmol/JmolCommands.js [new file with mode: 0644]
bin/jalview/ext/varna/JalviewVarnaBinding.class [new file with mode: 0644]
bin/jalview/ext/varna/JalviewVarnaBinding.js [new file with mode: 0644]
bin/jalview/ext/varna/RnaModel.class [new file with mode: 0644]
bin/jalview/ext/varna/RnaModel.js [new file with mode: 0644]
bin/jalview/ext/varna/VarnaCommands.class [new file with mode: 0644]
bin/jalview/ext/varna/VarnaCommands.js [new file with mode: 0644]
bin/jalview/io/AlignFile.class [new file with mode: 0644]
bin/jalview/io/AlignFile.js [new file with mode: 0644]
bin/jalview/io/AlignmentProperties.class [new file with mode: 0644]
bin/jalview/io/AlignmentProperties.js [new file with mode: 0644]
bin/jalview/io/AnnotationFile$ViewDef.class [new file with mode: 0644]
bin/jalview/io/AnnotationFile.class [new file with mode: 0644]
bin/jalview/io/AnnotationFile.js [new file with mode: 0644]
bin/jalview/io/AppletFormatAdapter.class [new file with mode: 0644]
bin/jalview/io/AppletFormatAdapter.js [new file with mode: 0644]
bin/jalview/io/FastaFile.class [new file with mode: 0644]
bin/jalview/io/FastaFile.js [new file with mode: 0644]
bin/jalview/io/FeaturesFile$GffPragmas.class [new file with mode: 0644]
bin/jalview/io/FeaturesFile$InvalidGFF3FieldException.class [new file with mode: 0644]
bin/jalview/io/FeaturesFile.class [new file with mode: 0644]
bin/jalview/io/FeaturesFile.js [new file with mode: 0644]
bin/jalview/io/FileParse.class [new file with mode: 0644]
bin/jalview/io/FileParse.js [new file with mode: 0644]
bin/jalview/io/IdentifyFile.class [new file with mode: 0644]
bin/jalview/io/IdentifyFile.js [new file with mode: 0644]
bin/jalview/io/JPredFile.class [new file with mode: 0644]
bin/jalview/io/JPredFile.js [new file with mode: 0644]
bin/jalview/io/JnetAnnotationMaker.class [new file with mode: 0644]
bin/jalview/io/JnetAnnotationMaker.js [new file with mode: 0644]
bin/jalview/io/MSFfile.class [new file with mode: 0644]
bin/jalview/io/MSFfile.js [new file with mode: 0644]
bin/jalview/io/ModellerDescription$resCode.class [new file with mode: 0644]
bin/jalview/io/ModellerDescription.class [new file with mode: 0644]
bin/jalview/io/ModellerDescription.js [new file with mode: 0644]
bin/jalview/io/NewickFile.class [new file with mode: 0644]
bin/jalview/io/NewickFile.js [new file with mode: 0644]
bin/jalview/io/PIRFile.class [new file with mode: 0644]
bin/jalview/io/PIRFile.js [new file with mode: 0644]
bin/jalview/io/PfamFile.class [new file with mode: 0644]
bin/jalview/io/PfamFile.js [new file with mode: 0644]
bin/jalview/io/PhylipFile.class [new file with mode: 0644]
bin/jalview/io/PhylipFile.js [new file with mode: 0644]
bin/jalview/io/PileUpfile.class [new file with mode: 0644]
bin/jalview/io/PileUpfile.js [new file with mode: 0644]
bin/jalview/io/SequenceAnnotationReport.class [new file with mode: 0644]
bin/jalview/io/SequenceAnnotationReport.js [new file with mode: 0644]
bin/jalview/io/TCoffeeScoreFile$Block.class [new file with mode: 0644]
bin/jalview/io/TCoffeeScoreFile$Header.class [new file with mode: 0644]
bin/jalview/io/TCoffeeScoreFile.class [new file with mode: 0644]
bin/jalview/io/TCoffeeScoreFile.js [new file with mode: 0644]
bin/jalview/javascript/JSFunctionExec$1.class [new file with mode: 0644]
bin/jalview/javascript/JSFunctionExec.class [new file with mode: 0644]
bin/jalview/javascript/JSFunctionExec.js [new file with mode: 0644]
bin/jalview/javascript/JalviewLiteJsApi.class [new file with mode: 0644]
bin/jalview/javascript/JalviewLiteJsApi.js [new file with mode: 0644]
bin/jalview/javascript/JsCallBack.class [new file with mode: 0644]
bin/jalview/javascript/JsCallBack.js [new file with mode: 0644]
bin/jalview/javascript/JsSelectionSender.class [new file with mode: 0644]
bin/jalview/javascript/JsSelectionSender.js [new file with mode: 0644]
bin/jalview/javascript/MouseOverListener.class [new file with mode: 0644]
bin/jalview/javascript/MouseOverListener.js [new file with mode: 0644]
bin/jalview/javascript/MouseOverStructureListener.class [new file with mode: 0644]
bin/jalview/javascript/MouseOverStructureListener.js [new file with mode: 0644]
bin/jalview/jsdev/Constants.class [new file with mode: 0644]
bin/jalview/jsdev/Constants.js [new file with mode: 0644]
bin/jalview/jsdev/GenericFileAdapter.class [new file with mode: 0644]
bin/jalview/jsdev/GenericFileAdapter.js [new file with mode: 0644]
bin/jalview/jsdev/JSRegex.class [new file with mode: 0644]
bin/jalview/jsdev/JSRegex.js [new file with mode: 0644]
bin/jalview/jsdev/JavaScriptRegExp.class [new file with mode: 0644]
bin/jalview/jsdev/JavaScriptRegExp.js [new file with mode: 0644]
bin/jalview/jsdev/RegExp.class [new file with mode: 0644]
bin/jalview/jsdev/RegExp.js [new file with mode: 0644]
bin/jalview/jsdev/api/RegExpInterface.class [new file with mode: 0644]
bin/jalview/jsdev/api/RegExpInterface.js [new file with mode: 0644]
bin/jalview/jsdev/api/VarnaRNA.class [new file with mode: 0644]
bin/jalview/jsdev/api/VarnaRNA.js [new file with mode: 0644]
bin/jalview/math/AlignmentDimension.class [new file with mode: 0644]
bin/jalview/math/AlignmentDimension.js [new file with mode: 0644]
bin/jalview/math/Matrix.class [new file with mode: 0644]
bin/jalview/math/Matrix.js [new file with mode: 0644]
bin/jalview/math/RotatableMatrix.class [new file with mode: 0644]
bin/jalview/math/RotatableMatrix.js [new file with mode: 0644]
bin/jalview/renderer/AnnotationRenderer.class [new file with mode: 0644]
bin/jalview/renderer/AnnotationRenderer.js [new file with mode: 0644]
bin/jalview/renderer/AwtRenderPanelI.class [new file with mode: 0644]
bin/jalview/renderer/AwtRenderPanelI.js [new file with mode: 0644]
bin/jalview/renderer/seqfeatures/FeatureRenderer.class [new file with mode: 0644]
bin/jalview/renderer/seqfeatures/FeatureRenderer.js [new file with mode: 0644]
bin/jalview/schemes/AnnotationColourGradient.class [new file with mode: 0644]
bin/jalview/schemes/AnnotationColourGradient.js [new file with mode: 0644]
bin/jalview/schemes/Blosum62ColourScheme.class [new file with mode: 0644]
bin/jalview/schemes/Blosum62ColourScheme.js [new file with mode: 0644]
bin/jalview/schemes/BuriedColourScheme.class [new file with mode: 0644]
bin/jalview/schemes/BuriedColourScheme.js [new file with mode: 0644]
bin/jalview/schemes/ClustalxColourScheme.class [new file with mode: 0644]
bin/jalview/schemes/ClustalxColourScheme.js [new file with mode: 0644]
bin/jalview/schemes/ColourSchemeI.class [new file with mode: 0644]
bin/jalview/schemes/ColourSchemeI.js [new file with mode: 0644]
bin/jalview/schemes/ColourSchemeProperty.class [new file with mode: 0644]
bin/jalview/schemes/ColourSchemeProperty.js [new file with mode: 0644]
bin/jalview/schemes/Consensus.class [new file with mode: 0644]
bin/jalview/schemes/Consensus.js [new file with mode: 0644]
bin/jalview/schemes/ConsensusColour.class [new file with mode: 0644]
bin/jalview/schemes/CovariationColourScheme.class [new file with mode: 0644]
bin/jalview/schemes/CovariationColourScheme.js [new file with mode: 0644]
bin/jalview/schemes/FollowerColourScheme.class [new file with mode: 0644]
bin/jalview/schemes/FollowerColourScheme.js [new file with mode: 0644]
bin/jalview/schemes/GraduatedColor.class [new file with mode: 0644]
bin/jalview/schemes/GraduatedColor.js [new file with mode: 0644]
bin/jalview/schemes/HelixColourScheme.class [new file with mode: 0644]
bin/jalview/schemes/HelixColourScheme.js [new file with mode: 0644]
bin/jalview/schemes/HydrophobicColourScheme.class [new file with mode: 0644]
bin/jalview/schemes/HydrophobicColourScheme.js [new file with mode: 0644]
bin/jalview/schemes/NucleotideColourScheme.class [new file with mode: 0644]
bin/jalview/schemes/NucleotideColourScheme.js [new file with mode: 0644]
bin/jalview/schemes/PIDColourScheme.class [new file with mode: 0644]
bin/jalview/schemes/PIDColourScheme.js [new file with mode: 0644]
bin/jalview/schemes/PurinePyrimidineColourScheme.class [new file with mode: 0644]
bin/jalview/schemes/PurinePyrimidineColourScheme.js [new file with mode: 0644]
bin/jalview/schemes/RNAHelicesColour.class [new file with mode: 0644]
bin/jalview/schemes/RNAHelicesColour.js [new file with mode: 0644]
bin/jalview/schemes/RNAHelicesColourChooser.class [new file with mode: 0644]
bin/jalview/schemes/RNAHelicesColourChooser.js [new file with mode: 0644]
bin/jalview/schemes/RNAInteractionColourScheme.class [new file with mode: 0644]
bin/jalview/schemes/RNAInteractionColourScheme.js [new file with mode: 0644]
bin/jalview/schemes/ResidueColourScheme.class [new file with mode: 0644]
bin/jalview/schemes/ResidueColourScheme.js [new file with mode: 0644]
bin/jalview/schemes/ResidueProperties.class [new file with mode: 0644]
bin/jalview/schemes/ResidueProperties.js [new file with mode: 0644]
bin/jalview/schemes/ScoreColourScheme.class [new file with mode: 0644]
bin/jalview/schemes/ScoreColourScheme.js [new file with mode: 0644]
bin/jalview/schemes/ScoreMatrix.class [new file with mode: 0644]
bin/jalview/schemes/ScoreMatrix.js [new file with mode: 0644]
bin/jalview/schemes/StrandColourScheme.class [new file with mode: 0644]
bin/jalview/schemes/StrandColourScheme.js [new file with mode: 0644]
bin/jalview/schemes/TCoffeeColourScheme.class [new file with mode: 0644]
bin/jalview/schemes/TCoffeeColourScheme.js [new file with mode: 0644]
bin/jalview/schemes/TaylorColourScheme.class [new file with mode: 0644]
bin/jalview/schemes/TaylorColourScheme.js [new file with mode: 0644]
bin/jalview/schemes/TurnColourScheme.class [new file with mode: 0644]
bin/jalview/schemes/TurnColourScheme.js [new file with mode: 0644]
bin/jalview/schemes/UserColourScheme.class [new file with mode: 0644]
bin/jalview/schemes/UserColourScheme.js [new file with mode: 0644]
bin/jalview/schemes/ZappoColourScheme.class [new file with mode: 0644]
bin/jalview/schemes/ZappoColourScheme.js [new file with mode: 0644]
bin/jalview/schemes/package.js [new file with mode: 0644]
bin/jalview/structure/AlignmentViewPanelListener.class [new file with mode: 0644]
bin/jalview/structure/AlignmentViewPanelListener.js [new file with mode: 0644]
bin/jalview/structure/AtomSpec.class [new file with mode: 0644]
bin/jalview/structure/AtomSpec.js [new file with mode: 0644]
bin/jalview/structure/CommandListener.class [new file with mode: 0644]
bin/jalview/structure/CommandListener.js [new file with mode: 0644]
bin/jalview/structure/SecondaryStructureListener.class [new file with mode: 0644]
bin/jalview/structure/SecondaryStructureListener.js [new file with mode: 0644]
bin/jalview/structure/SelectionListener.class [new file with mode: 0644]
bin/jalview/structure/SelectionListener.js [new file with mode: 0644]
bin/jalview/structure/SelectionSource.class [new file with mode: 0644]
bin/jalview/structure/SelectionSource.js [new file with mode: 0644]
bin/jalview/structure/SequenceListener.class [new file with mode: 0644]
bin/jalview/structure/SequenceListener.js [new file with mode: 0644]
bin/jalview/structure/StructureListener.class [new file with mode: 0644]
bin/jalview/structure/StructureListener.js [new file with mode: 0644]
bin/jalview/structure/StructureMapping.class [new file with mode: 0644]
bin/jalview/structure/StructureMapping.js [new file with mode: 0644]
bin/jalview/structure/StructureMappingcommandSet.class [new file with mode: 0644]
bin/jalview/structure/StructureMappingcommandSet.js [new file with mode: 0644]
bin/jalview/structure/StructureSelectionManager$1.class [new file with mode: 0644]
bin/jalview/structure/StructureSelectionManager.class [new file with mode: 0644]
bin/jalview/structure/StructureSelectionManager.js [new file with mode: 0644]
bin/jalview/structure/VamsasListener.class [new file with mode: 0644]
bin/jalview/structure/VamsasListener.js [new file with mode: 0644]
bin/jalview/structure/VamsasSource.class [new file with mode: 0644]
bin/jalview/structure/VamsasSource.js [new file with mode: 0644]
bin/jalview/structures/models/AAStructureBindingModel$SuperposeData.class [new file with mode: 0644]
bin/jalview/structures/models/AAStructureBindingModel.class [new file with mode: 0644]
bin/jalview/structures/models/AAStructureBindingModel.js [new file with mode: 0644]
bin/jalview/structures/models/SequenceStructureBindingModel.class [new file with mode: 0644]
bin/jalview/structures/models/SequenceStructureBindingModel.js [new file with mode: 0644]
bin/jalview/util/.cvsignore [new file with mode: 0644]
bin/jalview/util/AWTConsole.js [new file with mode: 0644]
bin/jalview/util/BrowserLauncher.js [new file with mode: 0644]
bin/jalview/util/ColorUtils.class [new file with mode: 0644]
bin/jalview/util/ColorUtils.js [new file with mode: 0644]
bin/jalview/util/Comparison.class [new file with mode: 0644]
bin/jalview/util/Comparison.js [new file with mode: 0644]
bin/jalview/util/DBRefUtils$1.class [new file with mode: 0644]
bin/jalview/util/DBRefUtils$2.class [new file with mode: 0644]
bin/jalview/util/DBRefUtils$3.class [new file with mode: 0644]
bin/jalview/util/DBRefUtils$4.class [new file with mode: 0644]
bin/jalview/util/DBRefUtils$5.class [new file with mode: 0644]
bin/jalview/util/DBRefUtils$6.class [new file with mode: 0644]
bin/jalview/util/DBRefUtils$DbRefComp.class [new file with mode: 0644]
bin/jalview/util/DBRefUtils.class [new file with mode: 0644]
bin/jalview/util/DBRefUtils.js [new file with mode: 0644]
bin/jalview/util/Format.class [new file with mode: 0644]
bin/jalview/util/Format.js [new file with mode: 0644]
bin/jalview/util/GroupUrlLink$UrlStringTooLongException.class [new file with mode: 0644]
bin/jalview/util/GroupUrlLink.class [new file with mode: 0644]
bin/jalview/util/GroupUrlLink.js [new file with mode: 0644]
bin/jalview/util/MapList.class [new file with mode: 0644]
bin/jalview/util/MapList.js [new file with mode: 0644]
bin/jalview/util/MappingUtils.class [new file with mode: 0644]
bin/jalview/util/MappingUtils.js [new file with mode: 0644]
bin/jalview/util/MessageManager.class [new file with mode: 0644]
bin/jalview/util/MessageManager.js [new file with mode: 0644]
bin/jalview/util/ParseHtmlBodyAndLinks.class [new file with mode: 0644]
bin/jalview/util/ParseHtmlBodyAndLinks.js [new file with mode: 0644]
bin/jalview/util/Platform.class [new file with mode: 0644]
bin/jalview/util/Platform.js [new file with mode: 0644]
bin/jalview/util/QuickSort$FloatComparator.class [new file with mode: 0644]
bin/jalview/util/QuickSort$IntComparator.class [new file with mode: 0644]
bin/jalview/util/QuickSort.class [new file with mode: 0644]
bin/jalview/util/QuickSort.js [new file with mode: 0644]
bin/jalview/util/ReverseListIterator.class [new file with mode: 0644]
bin/jalview/util/ReverseListIterator.js [new file with mode: 0644]
bin/jalview/util/ShiftList.class [new file with mode: 0644]
bin/jalview/util/ShiftList.js [new file with mode: 0644]
bin/jalview/util/StringUtils.class [new file with mode: 0644]
bin/jalview/util/StringUtils.js [new file with mode: 0644]
bin/jalview/util/TableSorter$1.class [new file with mode: 0644]
bin/jalview/util/TableSorter$2.class [new file with mode: 0644]
bin/jalview/util/TableSorter$Arrow.class [new file with mode: 0644]
bin/jalview/util/TableSorter$Directive.class [new file with mode: 0644]
bin/jalview/util/TableSorter$MouseHandler.class [new file with mode: 0644]
bin/jalview/util/TableSorter$Row.class [new file with mode: 0644]
bin/jalview/util/TableSorter$SortableHeaderRenderer.class [new file with mode: 0644]
bin/jalview/util/TableSorter$TableModelHandler.class [new file with mode: 0644]
bin/jalview/util/TableSorter.class [new file with mode: 0644]
bin/jalview/util/TableSorter.js [new file with mode: 0644]
bin/jalview/util/UrlLink.class [new file with mode: 0644]
bin/jalview/util/UrlLink.js [new file with mode: 0644]
bin/jalview/util/jarInputStreamProvider.js [new file with mode: 0644]
bin/jalview/viewmodel/AlignmentViewport.class [new file with mode: 0644]
bin/jalview/viewmodel/AlignmentViewport.js [new file with mode: 0644]
bin/jalview/viewmodel/PCAModel.class [new file with mode: 0644]
bin/jalview/viewmodel/PCAModel.js [new file with mode: 0644]
bin/jalview/viewmodel/annotationfilter/AnnotationFilterParameter$SearchableAnnotationField.class [new file with mode: 0644]
bin/jalview/viewmodel/annotationfilter/AnnotationFilterParameter$ThresholdType.class [new file with mode: 0644]
bin/jalview/viewmodel/annotationfilter/AnnotationFilterParameter.class [new file with mode: 0644]
bin/jalview/viewmodel/annotationfilter/AnnotationFilterParameter.js [new file with mode: 0644]
bin/jalview/viewmodel/seqfeatures/FeatureRendererModel.class [new file with mode: 0644]
bin/jalview/viewmodel/seqfeatures/FeatureRendererModel.js [new file with mode: 0644]
bin/jalview/viewmodel/seqfeatures/FeatureRendererSettings.class [new file with mode: 0644]
bin/jalview/viewmodel/seqfeatures/FeatureRendererSettings.js [new file with mode: 0644]
bin/jalview/viewmodel/seqfeatures/FeatureSettingsModel.class [new file with mode: 0644]
bin/jalview/viewmodel/seqfeatures/FeatureSettingsModel.js [new file with mode: 0644]
bin/jalview/viewmodel/seqfeatures/FeaturesDisplayed.class [new file with mode: 0644]
bin/jalview/viewmodel/seqfeatures/FeaturesDisplayed.js [new file with mode: 0644]
bin/jalview/viewmodel/styles/ViewStyle.class [new file with mode: 0644]
bin/jalview/viewmodel/styles/ViewStyle.js [new file with mode: 0644]
bin/jalview/workers/AlignCalcManager.class [new file with mode: 0644]
bin/jalview/workers/AlignCalcManager.js [new file with mode: 0644]
bin/jalview/workers/AlignCalcWorker.class [new file with mode: 0644]
bin/jalview/workers/AlignCalcWorker.js [new file with mode: 0644]
bin/jalview/workers/ComplementConsensusThread.class [new file with mode: 0644]
bin/jalview/workers/ComplementConsensusThread.js [new file with mode: 0644]
bin/jalview/workers/ConsensusThread.class [new file with mode: 0644]
bin/jalview/workers/ConsensusThread.js [new file with mode: 0644]
bin/jalview/workers/ConservationThread.class [new file with mode: 0644]
bin/jalview/workers/ConservationThread.js [new file with mode: 0644]
bin/jalview/workers/StrucConsensusThread.class [new file with mode: 0644]
bin/jalview/workers/StrucConsensusThread.js [new file with mode: 0644]
bin/java.policy.applet [new file with mode: 0644]
bin/javajs/J2SIgnoreImport.class [new file with mode: 0644]
bin/javajs/J2SIgnoreImport.js [new file with mode: 0644]
bin/javajs/J2SRequireImport.class [new file with mode: 0644]
bin/javajs/J2SRequireImport.js [new file with mode: 0644]
bin/javajs/api/BytePoster.class [new file with mode: 0644]
bin/javajs/api/BytePoster.js [new file with mode: 0644]
bin/javajs/api/EigenInterface.class [new file with mode: 0644]
bin/javajs/api/EigenInterface.js [new file with mode: 0644]
bin/javajs/api/EventManager.class [new file with mode: 0644]
bin/javajs/api/EventManager.js [new file with mode: 0644]
bin/javajs/api/FontManager.class [new file with mode: 0644]
bin/javajs/api/FontManager.js [new file with mode: 0644]
bin/javajs/api/GenericBinaryDocument.class [new file with mode: 0644]
bin/javajs/api/GenericBinaryDocument.js [new file with mode: 0644]
bin/javajs/api/GenericCifDataParser.class [new file with mode: 0644]
bin/javajs/api/GenericCifDataParser.js [new file with mode: 0644]
bin/javajs/api/GenericColor.class [new file with mode: 0644]
bin/javajs/api/GenericColor.js [new file with mode: 0644]
bin/javajs/api/GenericFileInterface.class [new file with mode: 0644]
bin/javajs/api/GenericFileInterface.js [new file with mode: 0644]
bin/javajs/api/GenericImageDialog.class [new file with mode: 0644]
bin/javajs/api/GenericImageDialog.js [new file with mode: 0644]
bin/javajs/api/GenericImageEncoder.class [new file with mode: 0644]
bin/javajs/api/GenericImageEncoder.js [new file with mode: 0644]
bin/javajs/api/GenericLineReader.class [new file with mode: 0644]
bin/javajs/api/GenericLineReader.js [new file with mode: 0644]
bin/javajs/api/GenericMenuInterface.class [new file with mode: 0644]
bin/javajs/api/GenericMenuInterface.js [new file with mode: 0644]
bin/javajs/api/GenericMouseInterface.class [new file with mode: 0644]
bin/javajs/api/GenericMouseInterface.js [new file with mode: 0644]
bin/javajs/api/GenericPlatform.class [new file with mode: 0644]
bin/javajs/api/GenericPlatform.js [new file with mode: 0644]
bin/javajs/api/GenericZipInputStream.class [new file with mode: 0644]
bin/javajs/api/GenericZipInputStream.js [new file with mode: 0644]
bin/javajs/api/GenericZipTools.class [new file with mode: 0644]
bin/javajs/api/GenericZipTools.js [new file with mode: 0644]
bin/javajs/api/HTMLElement.class [new file with mode: 0644]
bin/javajs/api/HTMLElement.js [new file with mode: 0644]
bin/javajs/api/HTMLWindowEvent.class [new file with mode: 0644]
bin/javajs/api/HTMLWindowEvent.js [new file with mode: 0644]
bin/javajs/api/Interface.class [new file with mode: 0644]
bin/javajs/api/Interface.js [new file with mode: 0644]
bin/javajs/api/JSInterface.class [new file with mode: 0644]
bin/javajs/api/JSInterface.js [new file with mode: 0644]
bin/javajs/api/JSONEncodable.class [new file with mode: 0644]
bin/javajs/api/JSONEncodable.js [new file with mode: 0644]
bin/javajs/api/JmolObjectInterface.class [new file with mode: 0644]
bin/javajs/api/JmolObjectInterface.js [new file with mode: 0644]
bin/javajs/api/PlatformViewer.class [new file with mode: 0644]
bin/javajs/api/PlatformViewer.js [new file with mode: 0644]
bin/javajs/api/SC.class [new file with mode: 0644]
bin/javajs/api/SC.js [new file with mode: 0644]
bin/javajs/api/SwingController.class [new file with mode: 0644]
bin/javajs/api/SwingController.js [new file with mode: 0644]
bin/javajs/api/ZInputStream.class [new file with mode: 0644]
bin/javajs/api/ZInputStream.js [new file with mode: 0644]
bin/javajs/awt/BorderLayout.class [new file with mode: 0644]
bin/javajs/awt/BorderLayout.js [new file with mode: 0644]
bin/javajs/awt/Color.class [new file with mode: 0644]
bin/javajs/awt/Color.js [new file with mode: 0644]
bin/javajs/awt/Component.class [new file with mode: 0644]
bin/javajs/awt/Component.js [new file with mode: 0644]
bin/javajs/awt/Container.class [new file with mode: 0644]
bin/javajs/awt/Container.js [new file with mode: 0644]
bin/javajs/awt/Dimension.class [new file with mode: 0644]
bin/javajs/awt/Dimension.js [new file with mode: 0644]
bin/javajs/awt/Font.class [new file with mode: 0644]
bin/javajs/awt/Font.js [new file with mode: 0644]
bin/javajs/awt/LayoutManager.class [new file with mode: 0644]
bin/javajs/awt/LayoutManager.js [new file with mode: 0644]
bin/javajs/awt/event/ActionEvent.class [new file with mode: 0644]
bin/javajs/awt/event/ActionEvent.js [new file with mode: 0644]
bin/javajs/awt/event/ActionListener.class [new file with mode: 0644]
bin/javajs/awt/event/ActionListener.js [new file with mode: 0644]
bin/javajs/awt/event/Event.class [new file with mode: 0644]
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site/j2s/java/awt/image/MemoryImageSource.js [new file with mode: 0644]
site/j2s/java/awt/image/MultiPixelPackedSampleModel.js [new file with mode: 0644]
site/j2s/java/awt/image/PackedColorModel.js [new file with mode: 0644]
site/j2s/java/awt/image/PixelGrabber.js [new file with mode: 0644]
site/j2s/java/awt/image/Raster.js [new file with mode: 0644]
site/j2s/java/awt/image/RasterFormatException.js [new file with mode: 0644]
site/j2s/java/awt/image/RasterOp.js [new file with mode: 0644]
site/j2s/java/awt/image/RenderedImage.js [new file with mode: 0644]
site/j2s/java/awt/image/RescaleOp.js [new file with mode: 0644]
site/j2s/java/awt/image/SampleModel.js [new file with mode: 0644]
site/j2s/java/awt/image/SinglePixelPackedSampleModel.js [new file with mode: 0644]
site/j2s/java/awt/image/VolatileImage.js [new file with mode: 0644]
site/j2s/java/awt/image/WritableRaster.js [new file with mode: 0644]
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site/j2s/java/awt/image/renderable/RenderableImage.js [new file with mode: 0644]
site/j2s/java/awt/package.js [new file with mode: 0644]
site/j2s/java/awt/peer/CanvasPeer.js [new file with mode: 0644]
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site/j2s/java/awt/peer/PanelPeer.js [new file with mode: 0644]
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site/j2s/java/beans/PropertyVetoException.js [new file with mode: 0644]
site/j2s/java/error.z.js [new file with mode: 0644]
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