source.jalview.org Git - jalviewjs.git/commitdiff

4759 files changed:

.classpath	[new file with mode: 0644]	patch \| blob
.gitattributes	[new file with mode: 0644]	patch \| blob
.j2s	[new file with mode: 0644]	patch \| blob
.project	[new file with mode: 0644]	patch \| blob
.settings/org.eclipse.jdt.core.prefs	[new file with mode: 0644]	patch \| blob
bin/MCview/Atom.class	[new file with mode: 0644]	patch \| blob
bin/MCview/Atom.js	[new file with mode: 0644]	patch \| blob
bin/MCview/Bond.class	[new file with mode: 0644]	patch \| blob
bin/MCview/Bond.js	[new file with mode: 0644]	patch \| blob
bin/MCview/PDBChain.class	[new file with mode: 0644]	patch \| blob
bin/MCview/PDBChain.js	[new file with mode: 0644]	patch \| blob
bin/MCview/PDBfile.class	[new file with mode: 0644]	patch \| blob
bin/MCview/PDBfile.js	[new file with mode: 0644]	patch \| blob
bin/MCview/Residue.class	[new file with mode: 0644]	patch \| blob
bin/MCview/Residue.js	[new file with mode: 0644]	patch \| blob
bin/awt2swing/Button.class	[new file with mode: 0644]	patch \| blob
bin/awt2swing/Button.js	[new file with mode: 0644]	patch \| blob
bin/awt2swing/Canvas.class	[new file with mode: 0644]	patch \| blob
bin/awt2swing/Canvas.js	[new file with mode: 0644]	patch \| blob
bin/awt2swing/Checkbox.class	[new file with mode: 0644]	patch \| blob
bin/awt2swing/Checkbox.js	[new file with mode: 0644]	patch \| blob
bin/awt2swing/CheckboxMenuItem.class	[new file with mode: 0644]	patch \| blob
bin/awt2swing/CheckboxMenuItem.js	[new file with mode: 0644]	patch \| blob
bin/awt2swing/Choice.class	[new file with mode: 0644]	patch \| blob
bin/awt2swing/Choice.js	[new file with mode: 0644]	patch \| blob
bin/awt2swing/Frame.class	[new file with mode: 0644]	patch \| blob
bin/awt2swing/Frame.js	[new file with mode: 0644]	patch \| blob
bin/awt2swing/Label.class	[new file with mode: 0644]	patch \| blob
bin/awt2swing/Label.js	[new file with mode: 0644]	patch \| blob
bin/awt2swing/Menu.class	[new file with mode: 0644]	patch \| blob
bin/awt2swing/Menu.js	[new file with mode: 0644]	patch \| blob
bin/awt2swing/MenuBar.class	[new file with mode: 0644]	patch \| blob
bin/awt2swing/MenuBar.js	[new file with mode: 0644]	patch \| blob
bin/awt2swing/MenuItem.class	[new file with mode: 0644]	patch \| blob
bin/awt2swing/MenuItem.js	[new file with mode: 0644]	patch \| blob
bin/awt2swing/Panel.class	[new file with mode: 0644]	patch \| blob
bin/awt2swing/Panel.js	[new file with mode: 0644]	patch \| blob
bin/awt2swing/PopupMenu.class	[new file with mode: 0644]	patch \| blob
bin/awt2swing/PopupMenu.js	[new file with mode: 0644]	patch \| blob
bin/awt2swing/ScrollPane.class	[new file with mode: 0644]	patch \| blob
bin/awt2swing/ScrollPane.js	[new file with mode: 0644]	patch \| blob
bin/awt2swing/Scrollbar.class	[new file with mode: 0644]	patch \| blob
bin/awt2swing/Scrollbar.js	[new file with mode: 0644]	patch \| blob
bin/awt2swing/TextArea.class	[new file with mode: 0644]	patch \| blob
bin/awt2swing/TextArea.js	[new file with mode: 0644]	patch \| blob
bin/awt2swing/TextField$1.class	[new file with mode: 0644]	patch \| blob
bin/awt2swing/TextField.class	[new file with mode: 0644]	patch \| blob
bin/awt2swing/TextField.js	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/AmpersandRule.class	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/AmpersandRule.js	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/Any.class	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/Any.js	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/BackG.class	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/BackG.js	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/BackMatch.class	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/BackMatch.js	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/BackRefRule.class	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/BackRefRule.js	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/Backup.class	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/Backup.js	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/BadRangeArgs.class	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/BasicStringBufferLike.class	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/BasicStringBufferLike.js	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/Bits.class	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/Bits.js	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/Boundary.class	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/Boundary.js	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/Bracket.class	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/Bracket.js	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/Branch.class	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/CaseMgr.class	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/CaseMgr.js	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/ChangeRule.class	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/ChangeRule.js	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/CodeRule.class	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/CodeRule.js	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/CodeVal.class	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/Ctrl.class	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/Ctrl.js	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/Custom.class	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/Custom.js	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/CustomEndpoint.class	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/CustomEndpoint.js	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/DirFileRegex.class	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/DirFileRegex.js	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/DotMulti.class	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/DotMulti.js	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/End.class	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/End.js	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/FastBracket.class	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/FastBracket.js	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/FastChar.class	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/FastMulti.class	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/FastMulti.js	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/FileRegex.class	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/FileRegex.js	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/Group.class	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/Group.js	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/LeftRule.class	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/LeftRule.js	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/MessageManager.class	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/MessageManager.js	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/Multi.class	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/Multi.js	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/MultiMin.class	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/MultiMin.js	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/Multi_stage2.class	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/Multi_stage2.js	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/NUnicodeAlpha.class	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/NUnicodeCurrency.class	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/NUnicodeDigit.class	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/NUnicodeMath.class	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/NUnicodePunct.class	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/NUnicodeW.class	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/NUnicodeWhite.class	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/NoPattern.class	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/NoPattern.js	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/NonDirFileRegex.class	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/NonDirFileRegex.js	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/NotImplementedError.class	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/NotImplementedError.js	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/NullPattern.class	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/NullPattern.js	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/NullRule.class	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/NullRule.js	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/Or.class	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/Or.js	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/OrMark.class	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/OrMark.js	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/PartialBuffer.class	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/PartialBuffer.js	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/Pattern.class	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/Pattern.js	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/PatternSub.class	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/PatternSub.js	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/PopRule.class	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/PopRule.js	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/Prop.class	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/Prop.js	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/Pthings.class	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/Pthings.js	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/PushRule.class	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/PushRule.js	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/RBuffer.class	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/RBuffer.js	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/Range.class	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/Range.js	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/RegHolder.class	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/RegOpt.class	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/RegOpt.js	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/RegRes.class	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/RegRes.js	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/RegSyntax.class	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/RegSyntax.js	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/RegSyntaxError.class	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/RegSyntaxError.js	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/Regex.class	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/Regex.js	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/RegexReader.class	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/RegexReader.js	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/RegexTokenizer.class	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/RegexTokenizer.js	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/RegexWriter.class	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/RegexWriter.js	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/ReplaceRule.class	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/ReplaceRule.js	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/Replacer.class	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/Replacer.js	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/RightRule.class	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/RightRule.js	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/Rthings.class	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/Rthings.js	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/RuleHolder.class	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/RuleHolder.js	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/Skip.class	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/Skip.js	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/Skip2.class	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/Skip2.js	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/SkipBMH.class	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/SkipBMH.js	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/Skipped.class	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/Skipped.js	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/SpecialRule.class	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/SpecialRule.js	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/Start.class	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/Start.js	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/StrPos.class	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/StrPos.js	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/StringBufferLike.class	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/StringBufferLike.js	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/StringLike.class	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/StringLike.js	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/StringRule.class	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/StringRule.js	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/SubMark.class	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/SubMark.js	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/TransPat.class	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/TransPat.js	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/TransRepRule.class	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/Transformer.class	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/Transformer.js	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/UniValidator.class	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/UniValidator.js	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/UnicodeAlpha.class	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/UnicodeCurrency.class	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/UnicodeDigit.class	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/UnicodeLower.class	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/UnicodeMath.class	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/UnicodePunct.class	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/UnicodeUpper.class	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/UnicodeW.class	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/UnicodeWhite.class	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/Util.class	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/Util.js	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/Validator.class	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/Validator.js	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/WantMoreTextReplaceRule.class	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/WantMoreTextReplaceRule.js	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/lookAhead.class	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/lookAhead.js	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/oneChar.class	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/oneChar.js	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/package.js	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/parsePerl.class	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/parsePerl.js	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/patInf.class	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/patInf.js	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/patInt.class	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/patInt.js	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/wrap/CharArrayBufferWrap.class	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/wrap/CharArrayBufferWrap.js	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/wrap/CharArrayWrap.class	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/wrap/CharArrayWrap.js	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/wrap/RandomAccessFileWrap.class	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/wrap/RandomAccessFileWrap.js	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/wrap/StringBufferWrap.class	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/wrap/StringBufferWrap.js	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/wrap/StringWrap.class	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/wrap/StringWrap.js	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/wrap/WriterWrap.class	[new file with mode: 0644]	patch \| blob
bin/com/stevesoft/pat/wrap/WriterWrap.js	[new file with mode: 0644]	patch \| blob
bin/fr/orsay/lri/varna/models/rna/RNA.class	[new file with mode: 0644]	patch \| blob
bin/fr/orsay/lri/varna/models/rna/RNA.js	[new file with mode: 0644]	patch \| blob
bin/jalview/analysis/AAFrequency.class	[new file with mode: 0644]	patch \| blob
bin/jalview/analysis/AAFrequency.js	[new file with mode: 0644]	patch \| blob
bin/jalview/analysis/AlignSeq.class	[new file with mode: 0644]	patch \| blob
bin/jalview/analysis/AlignSeq.js	[new file with mode: 0644]	patch \| blob
bin/jalview/analysis/AlignmentAnnotationUtils.class	[new file with mode: 0644]	patch \| blob
bin/jalview/analysis/AlignmentAnnotationUtils.js	[new file with mode: 0644]	patch \| blob
bin/jalview/analysis/AlignmentSorter.class	[new file with mode: 0644]	patch \| blob
bin/jalview/analysis/AlignmentSorter.js	[new file with mode: 0644]	patch \| blob
bin/jalview/analysis/AlignmentUtils.class	[new file with mode: 0644]	patch \| blob
bin/jalview/analysis/AlignmentUtils.js	[new file with mode: 0644]	patch \| blob
bin/jalview/analysis/AnnotationSorter$1.class	[new file with mode: 0644]	patch \| blob
bin/jalview/analysis/AnnotationSorter$2.class	[new file with mode: 0644]	patch \| blob
bin/jalview/analysis/AnnotationSorter$3.class	[new file with mode: 0644]	patch \| blob
bin/jalview/analysis/AnnotationSorter$SequenceAnnotationOrder.class	[new file with mode: 0644]	patch \| blob
bin/jalview/analysis/AnnotationSorter.class	[new file with mode: 0644]	patch \| blob
bin/jalview/analysis/AnnotationSorter.js	[new file with mode: 0644]	patch \| blob
bin/jalview/analysis/Cluster.class	[new file with mode: 0644]	patch \| blob
bin/jalview/analysis/CodingUtils.class	[new file with mode: 0644]	patch \| blob
bin/jalview/analysis/CodingUtils.js	[new file with mode: 0644]	patch \| blob
bin/jalview/analysis/CodonComparator.class	[new file with mode: 0644]	patch \| blob
bin/jalview/analysis/CodonComparator.js	[new file with mode: 0644]	patch \| blob
bin/jalview/analysis/Conservation.class	[new file with mode: 0644]	patch \| blob
bin/jalview/analysis/Conservation.js	[new file with mode: 0644]	patch \| blob
bin/jalview/analysis/Dna.class	[new file with mode: 0644]	patch \| blob
bin/jalview/analysis/Dna.js	[new file with mode: 0644]	patch \| blob
bin/jalview/analysis/Finder.class	[new file with mode: 0644]	patch \| blob
bin/jalview/analysis/Finder.js	[new file with mode: 0644]	patch \| blob
bin/jalview/analysis/Grouping.class	[new file with mode: 0644]	patch \| blob
bin/jalview/analysis/Grouping.js	[new file with mode: 0644]	patch \| blob
bin/jalview/analysis/NJTree$1.class	[new file with mode: 0644]	patch \| blob
bin/jalview/analysis/NJTree.class	[new file with mode: 0644]	patch \| blob
bin/jalview/analysis/NJTree.js	[new file with mode: 0644]	patch \| blob
bin/jalview/analysis/PCA$1.class	[new file with mode: 0644]	patch \| blob
bin/jalview/analysis/PCA.class	[new file with mode: 0644]	patch \| blob
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bin/jalview/analysis/Rna.class	[new file with mode: 0644]	patch \| blob
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bin/jalview/analysis/SecStrConsensus$SimpleBP.class	[new file with mode: 0644]	patch \| blob
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bin/jalview/analysis/SeqsetUtils.class	[new file with mode: 0644]	patch \| blob
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bin/jalview/analysis/SequenceIdMatcher$SeqIdName.class	[new file with mode: 0644]	patch \| blob
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bin/jalview/api/structures/JalviewStructureDisplayI.class	[new file with mode: 0644]	patch \| blob
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bin/jalview/appletgui/APopupMenu$1.class	[new file with mode: 0644]	patch \| blob
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bin/jalview/appletgui/AlignFrame$1AboutPanel.class	[new file with mode: 0644]	patch \| blob
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bin/jalview/appletgui/AlignmentPanel$1.class	[new file with mode: 0644]	patch \| blob
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bin/jalview/appletgui/AnnotationColourChooser.class	[new file with mode: 0644]	patch \| blob
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bin/jalview/appletgui/AnnotationColumnChooser$1.class	[new file with mode: 0644]	patch \| blob
bin/jalview/appletgui/AnnotationColumnChooser$FurtherActionPanel.class	[new file with mode: 0644]	patch \| blob
bin/jalview/appletgui/AnnotationColumnChooser$SearchPanel$1.class	[new file with mode: 0644]	patch \| blob
bin/jalview/appletgui/AnnotationColumnChooser$SearchPanel.class	[new file with mode: 0644]	patch \| blob
bin/jalview/appletgui/AnnotationColumnChooser$StructureFilterPanel.class	[new file with mode: 0644]	patch \| blob
bin/jalview/appletgui/AnnotationColumnChooser.class	[new file with mode: 0644]	patch \| blob
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bin/jalview/appletgui/AppletJmol$RenderPanel.class	[new file with mode: 0644]	patch \| blob
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bin/jalview/appletgui/FeatureRenderer$FeatureColourPanel.class	[new file with mode: 0644]	patch \| blob
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bin/jalview/appletgui/FeatureSettings$MyCheckbox.class	[new file with mode: 0644]	patch \| blob
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bin/jalview/appletgui/TreePanel$TreeLoader.class	[new file with mode: 0644]	patch \| blob
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bin/jalview/bin/Cache$Log.class	[new file with mode: 0644]	patch \| blob
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bin/jalview/bin/JalviewLite$1.class	[new file with mode: 0644]	patch \| blob
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bin/jalview/bin/JalviewLite$9.class	[new file with mode: 0644]	patch \| blob
bin/jalview/bin/JalviewLite$LoadJmolThread.class	[new file with mode: 0644]	patch \| blob
bin/jalview/bin/JalviewLite$LoadingThread.class	[new file with mode: 0644]	patch \| blob
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bin/jalview/commands/ChangeCaseCommand.class	[new file with mode: 0644]	patch \| blob
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bin/jalview/commands/CommandI.class	[new file with mode: 0644]	patch \| blob
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bin/jalview/commands/EditCommand$Action.class	[new file with mode: 0644]	patch \| blob
bin/jalview/commands/EditCommand$Edit.class	[new file with mode: 0644]	patch \| blob
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bin/jalview/commands/RemoveGapColCommand.class	[new file with mode: 0644]	patch \| blob
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bin/jalview/commands/RemoveGapsCommand.class	[new file with mode: 0644]	patch \| blob
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bin/jalview/commands/SlideSequencesCommand.class	[new file with mode: 0644]	patch \| blob
bin/jalview/commands/SlideSequencesCommand.js	[new file with mode: 0644]	patch \| blob
bin/jalview/commands/TrimRegionCommand.class	[new file with mode: 0644]	patch \| blob
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bin/jalview/controller/AlignViewController.class	[new file with mode: 0644]	patch \| blob
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bin/jalview/controller/FeatureSettingsController.class	[new file with mode: 0644]	patch \| blob
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bin/jalview/controller/FeatureSettingsControllerGuiI.class	[new file with mode: 0644]	patch \| blob
bin/jalview/controller/FeatureSettingsControllerGuiI.js	[new file with mode: 0644]	patch \| blob
bin/jalview/datamodel/ASequence.class	[new file with mode: 0644]	patch \| blob
bin/jalview/datamodel/ASequence.js	[new file with mode: 0644]	patch \| blob
bin/jalview/datamodel/ASequenceI.class	[new file with mode: 0644]	patch \| blob
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bin/jalview/datamodel/AlignedCodon.class	[new file with mode: 0644]	patch \| blob
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bin/jalview/datamodel/AlignedCodonFrame.class	[new file with mode: 0644]	patch \| blob
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bin/jalview/datamodel/AlignmentAnnotation$AnnotCharSequence.class	[new file with mode: 0644]	patch \| blob
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bin/jalview/datamodel/AlignmentI.class	[new file with mode: 0644]	patch \| blob
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bin/jalview/datamodel/AlignmentOrder.class	[new file with mode: 0644]	patch \| blob
bin/jalview/datamodel/AlignmentOrder.js	[new file with mode: 0644]	patch \| blob
bin/jalview/datamodel/AlignmentView$ScGroup.class	[new file with mode: 0644]	patch \| blob
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bin/jalview/datamodel/Annotation.class	[new file with mode: 0644]	patch \| blob
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bin/jalview/datamodel/BinaryNode.class	[new file with mode: 0644]	patch \| blob
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bin/jalview/datamodel/BinarySequence$InvalidSequenceTypeException.class	[new file with mode: 0644]	patch \| blob
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bin/jalview/datamodel/BinarySequence.js	[new file with mode: 0644]	patch \| blob
bin/jalview/datamodel/CigarArray.class	[new file with mode: 0644]	patch \| blob
bin/jalview/datamodel/CigarArray.js	[new file with mode: 0644]	patch \| blob
bin/jalview/datamodel/CigarBase.class	[new file with mode: 0644]	patch \| blob
bin/jalview/datamodel/CigarBase.js	[new file with mode: 0644]	patch \| blob
bin/jalview/datamodel/CigarCigar.class	[new file with mode: 0644]	patch \| blob
bin/jalview/datamodel/CigarCigar.js	[new file with mode: 0644]	patch \| blob
bin/jalview/datamodel/CigarSimple.class	[new file with mode: 0644]	patch \| blob
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bin/jalview/datamodel/ColumnSelection.class	[new file with mode: 0644]	patch \| blob
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bin/jalview/datamodel/FeatureProperties.class	[new file with mode: 0644]	patch \| blob
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bin/jalview/datamodel/HiddenSequences.class	[new file with mode: 0644]	patch \| blob
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bin/jalview/datamodel/IncompleteCodonException.class	[new file with mode: 0644]	patch \| blob
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bin/jalview/datamodel/Mapping$AlignedCodonIterator.class	[new file with mode: 0644]	patch \| blob
bin/jalview/datamodel/Mapping.class	[new file with mode: 0644]	patch \| blob
bin/jalview/datamodel/Mapping.js	[new file with mode: 0644]	patch \| blob
bin/jalview/datamodel/NodeTransformI.class	[new file with mode: 0644]	patch \| blob
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bin/jalview/datamodel/PDBEntry$Type.class	[new file with mode: 0644]	patch \| blob
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bin/jalview/datamodel/RnaViewerModel.class	[new file with mode: 0644]	patch \| blob
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bin/jalview/datamodel/SearchResults$Match.class	[new file with mode: 0644]	patch \| blob
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bin/jalview/datamodel/SecondaryStructureAnnotation.class	[new file with mode: 0644]	patch \| blob
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bin/jalview/datamodel/SeqCigar.class	[new file with mode: 0644]	patch \| blob
bin/jalview/datamodel/SeqCigar.js	[new file with mode: 0644]	patch \| blob
bin/jalview/datamodel/Sequence.class	[new file with mode: 0644]	patch \| blob
bin/jalview/datamodel/Sequence.js	[new file with mode: 0644]	patch \| blob
bin/jalview/datamodel/SequenceCollectionI.class	[new file with mode: 0644]	patch \| blob
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bin/jalview/datamodel/SequenceDummy.class	[new file with mode: 0644]	patch \| blob
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bin/jalview/datamodel/SequenceFeature.class	[new file with mode: 0644]	patch \| blob
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bin/jalview/datamodel/SequenceGroup.class	[new file with mode: 0644]	patch \| blob
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bin/jalview/datamodel/SequenceI.class	[new file with mode: 0644]	patch \| blob
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bin/jalview/datamodel/SequenceNode.class	[new file with mode: 0644]	patch \| blob
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bin/jalview/datamodel/SequencePoint.class	[new file with mode: 0644]	patch \| blob
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bin/jalview/datamodel/StructureViewerModel$StructureData.class	[new file with mode: 0644]	patch \| blob
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bin/jalview/datamodel/UniprotEntry.class	[new file with mode: 0644]	patch \| blob
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bin/jalview/datamodel/UniprotProteinName.class	[new file with mode: 0644]	patch \| blob
bin/jalview/datamodel/UniprotProteinName.js	[new file with mode: 0644]	patch \| blob
bin/jalview/datamodel/UniprotSequence.class	[new file with mode: 0644]	patch \| blob
bin/jalview/datamodel/UniprotSequence.js	[new file with mode: 0644]	patch \| blob
bin/jalview/ext/jmol/JmolCommands.class	[new file with mode: 0644]	patch \| blob
bin/jalview/ext/jmol/JmolCommands.js	[new file with mode: 0644]	patch \| blob
bin/jalview/ext/varna/JalviewVarnaBinding.class	[new file with mode: 0644]	patch \| blob
bin/jalview/ext/varna/JalviewVarnaBinding.js	[new file with mode: 0644]	patch \| blob
bin/jalview/ext/varna/RnaModel.class	[new file with mode: 0644]	patch \| blob
bin/jalview/ext/varna/RnaModel.js	[new file with mode: 0644]	patch \| blob
bin/jalview/ext/varna/VarnaCommands.class	[new file with mode: 0644]	patch \| blob
bin/jalview/ext/varna/VarnaCommands.js	[new file with mode: 0644]	patch \| blob
bin/jalview/io/AlignFile.class	[new file with mode: 0644]	patch \| blob
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bin/jalview/io/AlignmentProperties.class	[new file with mode: 0644]	patch \| blob
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bin/jalview/io/AnnotationFile$ViewDef.class	[new file with mode: 0644]	patch \| blob
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bin/jalview/io/FeaturesFile$GffPragmas.class	[new file with mode: 0644]	patch \| blob
bin/jalview/io/FeaturesFile$InvalidGFF3FieldException.class	[new file with mode: 0644]	patch \| blob
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bin/jalview/io/JnetAnnotationMaker.class	[new file with mode: 0644]	patch \| blob
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bin/jalview/io/ModellerDescription$resCode.class	[new file with mode: 0644]	patch \| blob
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bin/jalview/io/SequenceAnnotationReport.class	[new file with mode: 0644]	patch \| blob
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bin/jalview/io/TCoffeeScoreFile$Block.class	[new file with mode: 0644]	patch \| blob
bin/jalview/io/TCoffeeScoreFile$Header.class	[new file with mode: 0644]	patch \| blob
bin/jalview/io/TCoffeeScoreFile.class	[new file with mode: 0644]	patch \| blob
bin/jalview/io/TCoffeeScoreFile.js	[new file with mode: 0644]	patch \| blob
bin/jalview/javascript/JSFunctionExec$1.class	[new file with mode: 0644]	patch \| blob
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bin/jalview/javascript/JalviewLiteJsApi.class	[new file with mode: 0644]	patch \| blob
bin/jalview/javascript/JalviewLiteJsApi.js	[new file with mode: 0644]	patch \| blob
bin/jalview/javascript/JsCallBack.class	[new file with mode: 0644]	patch \| blob
bin/jalview/javascript/JsCallBack.js	[new file with mode: 0644]	patch \| blob
bin/jalview/javascript/JsSelectionSender.class	[new file with mode: 0644]	patch \| blob
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bin/jalview/javascript/MouseOverListener.class	[new file with mode: 0644]	patch \| blob
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bin/jalview/javascript/MouseOverStructureListener.class	[new file with mode: 0644]	patch \| blob
bin/jalview/javascript/MouseOverStructureListener.js	[new file with mode: 0644]	patch \| blob
bin/jalview/jsdev/Constants.class	[new file with mode: 0644]	patch \| blob
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bin/jalview/jsdev/GenericFileAdapter.class	[new file with mode: 0644]	patch \| blob
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bin/jalview/jsdev/JSRegex.class	[new file with mode: 0644]	patch \| blob
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bin/jalview/jsdev/JavaScriptRegExp.class	[new file with mode: 0644]	patch \| blob
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bin/jalview/jsdev/RegExp.class	[new file with mode: 0644]	patch \| blob
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bin/jalview/jsdev/api/RegExpInterface.class	[new file with mode: 0644]	patch \| blob
bin/jalview/jsdev/api/RegExpInterface.js	[new file with mode: 0644]	patch \| blob
bin/jalview/jsdev/api/VarnaRNA.class	[new file with mode: 0644]	patch \| blob
bin/jalview/jsdev/api/VarnaRNA.js	[new file with mode: 0644]	patch \| blob
bin/jalview/math/AlignmentDimension.class	[new file with mode: 0644]	patch \| blob
bin/jalview/math/AlignmentDimension.js	[new file with mode: 0644]	patch \| blob
bin/jalview/math/Matrix.class	[new file with mode: 0644]	patch \| blob
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bin/jalview/math/RotatableMatrix.class	[new file with mode: 0644]	patch \| blob
bin/jalview/math/RotatableMatrix.js	[new file with mode: 0644]	patch \| blob
bin/jalview/renderer/AnnotationRenderer.class	[new file with mode: 0644]	patch \| blob
bin/jalview/renderer/AnnotationRenderer.js	[new file with mode: 0644]	patch \| blob
bin/jalview/renderer/AwtRenderPanelI.class	[new file with mode: 0644]	patch \| blob
bin/jalview/renderer/AwtRenderPanelI.js	[new file with mode: 0644]	patch \| blob
bin/jalview/renderer/seqfeatures/FeatureRenderer.class	[new file with mode: 0644]	patch \| blob
bin/jalview/renderer/seqfeatures/FeatureRenderer.js	[new file with mode: 0644]	patch \| blob
bin/jalview/schemes/AnnotationColourGradient.class	[new file with mode: 0644]	patch \| blob
bin/jalview/schemes/AnnotationColourGradient.js	[new file with mode: 0644]	patch \| blob
bin/jalview/schemes/Blosum62ColourScheme.class	[new file with mode: 0644]	patch \| blob
bin/jalview/schemes/Blosum62ColourScheme.js	[new file with mode: 0644]	patch \| blob
bin/jalview/schemes/BuriedColourScheme.class	[new file with mode: 0644]	patch \| blob
bin/jalview/schemes/BuriedColourScheme.js	[new file with mode: 0644]	patch \| blob
bin/jalview/schemes/ClustalxColourScheme.class	[new file with mode: 0644]	patch \| blob
bin/jalview/schemes/ClustalxColourScheme.js	[new file with mode: 0644]	patch \| blob
bin/jalview/schemes/ColourSchemeI.class	[new file with mode: 0644]	patch \| blob
bin/jalview/schemes/ColourSchemeI.js	[new file with mode: 0644]	patch \| blob
bin/jalview/schemes/ColourSchemeProperty.class	[new file with mode: 0644]	patch \| blob
bin/jalview/schemes/ColourSchemeProperty.js	[new file with mode: 0644]	patch \| blob
bin/jalview/schemes/Consensus.class	[new file with mode: 0644]	patch \| blob
bin/jalview/schemes/Consensus.js	[new file with mode: 0644]	patch \| blob
bin/jalview/schemes/ConsensusColour.class	[new file with mode: 0644]	patch \| blob
bin/jalview/schemes/CovariationColourScheme.class	[new file with mode: 0644]	patch \| blob
bin/jalview/schemes/CovariationColourScheme.js	[new file with mode: 0644]	patch \| blob
bin/jalview/schemes/FollowerColourScheme.class	[new file with mode: 0644]	patch \| blob
bin/jalview/schemes/FollowerColourScheme.js	[new file with mode: 0644]	patch \| blob
bin/jalview/schemes/GraduatedColor.class	[new file with mode: 0644]	patch \| blob
bin/jalview/schemes/GraduatedColor.js	[new file with mode: 0644]	patch \| blob
bin/jalview/schemes/HelixColourScheme.class	[new file with mode: 0644]	patch \| blob
bin/jalview/schemes/HelixColourScheme.js	[new file with mode: 0644]	patch \| blob
bin/jalview/schemes/HydrophobicColourScheme.class	[new file with mode: 0644]	patch \| blob
bin/jalview/schemes/HydrophobicColourScheme.js	[new file with mode: 0644]	patch \| blob
bin/jalview/schemes/NucleotideColourScheme.class	[new file with mode: 0644]	patch \| blob
bin/jalview/schemes/NucleotideColourScheme.js	[new file with mode: 0644]	patch \| blob
bin/jalview/schemes/PIDColourScheme.class	[new file with mode: 0644]	patch \| blob
bin/jalview/schemes/PIDColourScheme.js	[new file with mode: 0644]	patch \| blob
bin/jalview/schemes/PurinePyrimidineColourScheme.class	[new file with mode: 0644]	patch \| blob
bin/jalview/schemes/PurinePyrimidineColourScheme.js	[new file with mode: 0644]	patch \| blob
bin/jalview/schemes/RNAHelicesColour.class	[new file with mode: 0644]	patch \| blob
bin/jalview/schemes/RNAHelicesColour.js	[new file with mode: 0644]	patch \| blob
bin/jalview/schemes/RNAHelicesColourChooser.class	[new file with mode: 0644]	patch \| blob
bin/jalview/schemes/RNAHelicesColourChooser.js	[new file with mode: 0644]	patch \| blob
bin/jalview/schemes/RNAInteractionColourScheme.class	[new file with mode: 0644]	patch \| blob
bin/jalview/schemes/RNAInteractionColourScheme.js	[new file with mode: 0644]	patch \| blob
bin/jalview/schemes/ResidueColourScheme.class	[new file with mode: 0644]	patch \| blob
bin/jalview/schemes/ResidueColourScheme.js	[new file with mode: 0644]	patch \| blob
bin/jalview/schemes/ResidueProperties.class	[new file with mode: 0644]	patch \| blob
bin/jalview/schemes/ResidueProperties.js	[new file with mode: 0644]	patch \| blob
bin/jalview/schemes/ScoreColourScheme.class	[new file with mode: 0644]	patch \| blob
bin/jalview/schemes/ScoreColourScheme.js	[new file with mode: 0644]	patch \| blob
bin/jalview/schemes/ScoreMatrix.class	[new file with mode: 0644]	patch \| blob
bin/jalview/schemes/ScoreMatrix.js	[new file with mode: 0644]	patch \| blob
bin/jalview/schemes/StrandColourScheme.class	[new file with mode: 0644]	patch \| blob
bin/jalview/schemes/StrandColourScheme.js	[new file with mode: 0644]	patch \| blob
bin/jalview/schemes/TCoffeeColourScheme.class	[new file with mode: 0644]	patch \| blob
bin/jalview/schemes/TCoffeeColourScheme.js	[new file with mode: 0644]	patch \| blob
bin/jalview/schemes/TaylorColourScheme.class	[new file with mode: 0644]	patch \| blob
bin/jalview/schemes/TaylorColourScheme.js	[new file with mode: 0644]	patch \| blob
bin/jalview/schemes/TurnColourScheme.class	[new file with mode: 0644]	patch \| blob
bin/jalview/schemes/TurnColourScheme.js	[new file with mode: 0644]	patch \| blob
bin/jalview/schemes/UserColourScheme.class	[new file with mode: 0644]	patch \| blob
bin/jalview/schemes/UserColourScheme.js	[new file with mode: 0644]	patch \| blob
bin/jalview/schemes/ZappoColourScheme.class	[new file with mode: 0644]	patch \| blob
bin/jalview/schemes/ZappoColourScheme.js	[new file with mode: 0644]	patch \| blob
bin/jalview/schemes/package.js	[new file with mode: 0644]	patch \| blob
bin/jalview/structure/AlignmentViewPanelListener.class	[new file with mode: 0644]	patch \| blob
bin/jalview/structure/AlignmentViewPanelListener.js	[new file with mode: 0644]	patch \| blob
bin/jalview/structure/AtomSpec.class	[new file with mode: 0644]	patch \| blob
bin/jalview/structure/AtomSpec.js	[new file with mode: 0644]	patch \| blob
bin/jalview/structure/CommandListener.class	[new file with mode: 0644]	patch \| blob
bin/jalview/structure/CommandListener.js	[new file with mode: 0644]	patch \| blob
bin/jalview/structure/SecondaryStructureListener.class	[new file with mode: 0644]	patch \| blob
bin/jalview/structure/SecondaryStructureListener.js	[new file with mode: 0644]	patch \| blob
bin/jalview/structure/SelectionListener.class	[new file with mode: 0644]	patch \| blob
bin/jalview/structure/SelectionListener.js	[new file with mode: 0644]	patch \| blob
bin/jalview/structure/SelectionSource.class	[new file with mode: 0644]	patch \| blob
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bin/jalview/structure/SequenceListener.class	[new file with mode: 0644]	patch \| blob
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bin/jalview/structure/StructureListener.class	[new file with mode: 0644]	patch \| blob
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bin/jalview/structure/StructureMapping.class	[new file with mode: 0644]	patch \| blob
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bin/jalview/structure/StructureMappingcommandSet.class	[new file with mode: 0644]	patch \| blob
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bin/jalview/structure/StructureSelectionManager$1.class	[new file with mode: 0644]	patch \| blob
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bin/jalview/structure/VamsasListener.class	[new file with mode: 0644]	patch \| blob
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bin/jalview/structure/VamsasSource.class	[new file with mode: 0644]	patch \| blob
bin/jalview/structure/VamsasSource.js	[new file with mode: 0644]	patch \| blob
bin/jalview/structures/models/AAStructureBindingModel$SuperposeData.class	[new file with mode: 0644]	patch \| blob
bin/jalview/structures/models/AAStructureBindingModel.class	[new file with mode: 0644]	patch \| blob
bin/jalview/structures/models/AAStructureBindingModel.js	[new file with mode: 0644]	patch \| blob
bin/jalview/structures/models/SequenceStructureBindingModel.class	[new file with mode: 0644]	patch \| blob
bin/jalview/structures/models/SequenceStructureBindingModel.js	[new file with mode: 0644]	patch \| blob
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site/j2s/jalview/jsdev/Constants.js	[new file with mode: 0644]	patch \| blob
site/j2s/jalview/jsdev/GenericFileAdapter.js	[new file with mode: 0644]	patch \| blob
site/j2s/jalview/jsdev/JSRegex.js	[new file with mode: 0644]	patch \| blob
site/j2s/jalview/jsdev/JavaScriptRegExp.js	[new file with mode: 0644]	patch \| blob
site/j2s/jalview/jsdev/RegExp.js	[new file with mode: 0644]	patch \| blob
site/j2s/jalview/jsdev/Regex.js	[new file with mode: 0644]	patch \| blob
site/j2s/jalview/jsdev/RegexJS.js	[new file with mode: 0644]	patch \| blob
site/j2s/jalview/jsdev/api/RegExpInterface.js	[new file with mode: 0644]	patch \| blob
site/j2s/jalview/jsdev/api/VarnaRNA.js	[new file with mode: 0644]	patch \| blob
site/j2s/jalview/math/AlignmentDimension.js	[new file with mode: 0644]	patch \| blob
site/j2s/jalview/math/Matrix.js	[new file with mode: 0644]	patch \| blob
site/j2s/jalview/math/RotatableMatrix.js	[new file with mode: 0644]	patch \| blob
site/j2s/jalview/renderer/AnnotationRenderer.js	[new file with mode: 0644]	patch \| blob
site/j2s/jalview/renderer/AwtRenderPanelI.js	[new file with mode: 0644]	patch \| blob
site/j2s/jalview/renderer/seqfeatures/FeatureRenderer.js	[new file with mode: 0644]	patch \| blob
site/j2s/jalview/resources/.cvsignore	[new file with mode: 0644]	patch \| blob
site/j2s/jalview/resources/authors.props	[new file with mode: 0644]	patch \| blob
site/j2s/jalview/resources/biojs_templates/BioJsMSA_1.0.txt	[new file with mode: 0644]	patch \| blob
site/j2s/jalview/resources/biojs_templates/BioJsMSA_1.1.txt	[new file with mode: 0644]	patch \| blob
site/j2s/jalview/resources/biojs_templates/Latest_BioJsMSA_1.2.txt	[new file with mode: 0644]	patch \| blob
site/j2s/jalview/resources/embl_mapping.xml	[new file with mode: 0644]	patch \| blob
site/j2s/jalview/resources/images/.cvsignore	[new file with mode: 0644]	patch \| blob
site/j2s/jalview/resources/images/JalviewLogo_Huge.png	[new file with mode: 0644]	patch \| blob
site/j2s/jalview/resources/images/JalviewLogo_big.png	[new file with mode: 0644]	patch \| blob
site/j2s/jalview/resources/images/Jalview_Logo.png	[new file with mode: 0644]	patch \| blob
site/j2s/jalview/resources/images/Jalview_Logo_small.png	[new file with mode: 0644]	patch \| blob
site/j2s/jalview/resources/images/dna.png	[new file with mode: 0644]	patch \| blob
site/j2s/jalview/resources/images/error.png	[new file with mode: 0644]	patch \|

author	gmungoc <g.m.carstairs@dundee.ac.uk>
	Thu, 23 Jul 2015 13:14:52 +0000 (14:14 +0100)
committer	gmungoc <g.m.carstairs@dundee.ac.uk>
	Thu, 23 Jul 2015 13:14:52 +0000 (14:14 +0100)