JPRED-2 NEw version Jpred-3.0.2

[jpred.git] / jpred / jpred

diff --git a/jpred/jpred b/jpred/jpred
index 6ed4104..30e9f40 100755 (executable)
--- a/jpred/jpred
+++ b/jpred/jpred
@@ -79,13 +79,16 @@ Chris Cole <christian@cole.name> (current maintainer)
 
 use strict;
 use warnings;
-use Getopt::Long;
+use Getopt::Long qw(:config auto_version);
 use Pod::Usage;
 use Carp;
 use UNIVERSAL qw(isa);
 use Data::Dumper;
 use File::Temp;
 
+use FindBin qw($Bin);
+use lib "$Bin/../lib";
+
 use Jpred;  # needed to define BLAST environment variables
 
 # my modules
@@ -105,7 +108,7 @@ use Utils qw(profile);
 use Run qw(check);
 use Paths qw($pairwise $oc $jnet $hmmbuild $hmmconvert $psiblastbin);
 
-my $VERSION = '3.0.1';
+our $VERSION = '3.0.2';
 my $MAX_ALIGN = 1000;  # maximum number of alignment sequences allowed
 my $NR_CUT = 75;       # cut-off seqeunce ID value for defining non-redundancy