JPRED-2 Initial commit of software for the Jpred website (some files excluded due...

[jpred.git] / websoft / data / blast / KSkyte.flt

diff --git a/websoft/data/blast/KSkyte.flt b/websoft/data/blast/KSkyte.flt
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+;Hydropathy      ; 16 character descriptor
+;2               ; 1=Nucleic  2=Protein
+1                ; 1=Filter   2-64=No. Pos. in Matrix
+19               ; 3-256=Filter Window  0-100=Percent Cutoff Matrix Output
+   1.800   A  Ala
+  -3.500   BB Asx
+   2.500   C  Cys   Note: Columns 1-8 must contain 1 numeric value only
+  -3.500   D  Asp
+  -3.500   E  Glu   Note: This file is required for amphpathic helic
+   2.800   F  Phe
+  -0.400   G  Gly
+  -3.200   H  His
+   4.500   I  Ile
+  -3.900   K  Lys
+   3.800   L  Leu
+   1.900   M  Met
+  -3.500   N  Asn
+  -1.600   P  Pro
+  -3.500   Q  Gln
+  -4.500   R  Arg
+  -0.800   S  Ser
+  -0.700   T  Thr
+   4.200   V  Val
+  -0.900   W  Trp
+  -0.490   X- Unk
+  -1.300   Y  Tyr
+  -3.500   ZZ Glx
+  -0.490   ** ***
+;Hydropathy - Kyte and Doolittle (Hydrophobicity Index)
+;A window of 19 residues is the published (and recomended) value
+;for calculating the moving average to find membrane spanning regions