JPRED-2 Add sources of all binaries (except alscript) to Git jpred-3.0.2
authorSasha Sherstnev <a.sherstnev@dundee.ac.uk>
Mon, 18 Nov 2013 16:50:15 +0000 (16:50 +0000)
committerSasha Sherstnev <a.sherstnev@dundee.ac.uk>
Mon, 18 Nov 2013 16:53:23 +0000 (16:53 +0000)
commit81362e35a140cd040e948b921053e74267f8a6e3
tree45b36da398ada53b5affb3346235b551fd39d1af
parent2cf032f4b987ba747c04159965aed78e3820d942
JPRED-2 Add sources of all binaries (except alscript) to Git
249 files changed:
sources/jnet/COPYING [new file with mode: 0644]
sources/jnet/Makefile [new file with mode: 0644]
sources/jnet/cmdline/Makefile [new file with mode: 0644]
sources/jnet/cmdline/cmdline.c [new file with mode: 0644]
sources/jnet/cmdline/cmdline.ggo [new file with mode: 0644]
sources/jnet/cmdline/cmdline.h [new file with mode: 0644]
sources/jnet/hmm1.c [new file with mode: 0644]
sources/jnet/hmm1.h [new file with mode: 0644]
sources/jnet/hmm2.c [new file with mode: 0644]
sources/jnet/hmm2.h [new file with mode: 0644]
sources/jnet/hmmsol0.c [new file with mode: 0644]
sources/jnet/hmmsol0.h [new file with mode: 0644]
sources/jnet/hmmsol25.c [new file with mode: 0644]
sources/jnet/hmmsol25.h [new file with mode: 0644]
sources/jnet/hmmsol5.c [new file with mode: 0644]
sources/jnet/hmmsol5.h [new file with mode: 0644]
sources/jnet/jnet.c [new file with mode: 0644]
sources/jnet/jnet.c~ [new file with mode: 0644]
sources/jnet/psisol0.c [new file with mode: 0644]
sources/jnet/psisol0.h [new file with mode: 0644]
sources/jnet/psisol25.c [new file with mode: 0644]
sources/jnet/psisol25.h [new file with mode: 0644]
sources/jnet/psisol5.c [new file with mode: 0644]
sources/jnet/psisol5.h [new file with mode: 0644]
sources/jnet/pssma1.c [new file with mode: 0644]
sources/jnet/pssma1.h [new file with mode: 0644]
sources/jnet/pssma2.c [new file with mode: 0644]
sources/jnet/pssma2.h [new file with mode: 0644]
sources/jnet/pssmb1.c [new file with mode: 0644]
sources/jnet/pssmb1.h [new file with mode: 0644]
sources/jnet/pssmb2.c [new file with mode: 0644]
sources/jnet/pssmb2.h [new file with mode: 0644]
sources/jnet/test/d1b65a_.hmm [new file with mode: 0644]
sources/jnet/test/d1b65a_.jnet [new file with mode: 0644]
sources/jnet/test/d1b65a_.pssm [new file with mode: 0644]
sources/multicoil/Multicoil.tar.gz [new file with mode: 0644]
sources/multicoil/PairCoilDiffer.c [new file with mode: 0644]
sources/multicoil/PairCoilDiffer_cuts.c [new file with mode: 0644]
sources/multicoil/cgi-bin-data.out [new file with mode: 0644]
sources/multicoil/compute_like.c [new file with mode: 0644]
sources/multicoil/compute_like.h [new file with mode: 0644]
sources/multicoil/config.h [new file with mode: 0644]
sources/multicoil/data.log [new file with mode: 0644]
sources/multicoil/data.out [new file with mode: 0644]
sources/multicoil/data64.log [new file with mode: 0644]
sources/multicoil/data64.out [new file with mode: 0644]
sources/multicoil/debug_printout_flag.h [new file with mode: 0644]
sources/multicoil/dimer28.txt [new file with mode: 0644]
sources/multicoil/dump [new file with mode: 0644]
sources/multicoil/dump2 [new file with mode: 0644]
sources/multicoil/dump32 [new file with mode: 0644]
sources/multicoil/dump64 [new file with mode: 0644]
sources/multicoil/dyn.c [new file with mode: 0644]
sources/multicoil/estimate_probabilities.c [new file with mode: 0644]
sources/multicoil/estimate_probabilities_cuts.c [new file with mode: 0644]
sources/multicoil/gauss_parameters_combo21 [new file with mode: 0644]
sources/multicoil/gauss_parameters_combo28 [new file with mode: 0644]
sources/multicoil/genbnk.txt [new file with mode: 0644]
sources/multicoil/get_defaults.c [new file with mode: 0644]
sources/multicoil/get_defaults_cuts.c [new file with mode: 0644]
sources/multicoil/hmm.c [new file with mode: 0644]
sources/multicoil/hmm.h [new file with mode: 0644]
sources/multicoil/initialization.c [new file with mode: 0644]
sources/multicoil/initialization_cuts.c [new file with mode: 0644]
sources/multicoil/interface.c [new file with mode: 0644]
sources/multicoil/interface.h [new file with mode: 0644]
sources/multicoil/interface_cuts.c [new file with mode: 0644]
sources/multicoil/interface_old.c [new file with mode: 0644]
sources/multicoil/interface_precuts.c [new file with mode: 0644]
sources/multicoil/junk.c [new file with mode: 0644]
sources/multicoil/lib/cctb28.Z [new file with mode: 0644]
sources/multicoil/lib/dimer28.txt [new file with mode: 0644]
sources/multicoil/lib/gauss_parameters_combo21 [new file with mode: 0644]
sources/multicoil/lib/gauss_parameters_combo28 [new file with mode: 0644]
sources/multicoil/lib/genbnk.Z [new file with mode: 0644]
sources/multicoil/lib/genbnk.txt [new file with mode: 0644]
sources/multicoil/lib/trimer28 [new file with mode: 0644]
sources/multicoil/lib/trimer28.txt [new file with mode: 0644]
sources/multicoil/likelihood.h [new file with mode: 0644]
sources/multicoil/makefile [new file with mode: 0644]
sources/multicoil/matrix_operations.c [new file with mode: 0644]
sources/multicoil/mc_config [new file with mode: 0644]
sources/multicoil/methods.c [new file with mode: 0644]
sources/multicoil/methods.h [new file with mode: 0644]
sources/multicoil/multicoil_config [new file with mode: 0644]
sources/multicoil/multivariate_like2.c [new file with mode: 0644]
sources/multicoil/multivariate_like2_cuts.c [new file with mode: 0644]
sources/multicoil/murine.seq [new file with mode: 0644]
sources/multicoil/nrutil.c [new file with mode: 0644]
sources/multicoil/nrutil.h [new file with mode: 0644]
sources/multicoil/one_score_per_pos.c [new file with mode: 0644]
sources/multicoil/one_score_per_pos_cuts.c [new file with mode: 0644]
sources/multicoil/options.h [new file with mode: 0644]
sources/multicoil/output.c [new file with mode: 0644]
sources/multicoil/output_cuts.c [new file with mode: 0644]
sources/multicoil/postscript.c [new file with mode: 0644]
sources/multicoil/postscript.h [new file with mode: 0644]
sources/multicoil/sc.h [new file with mode: 0644]
sources/multicoil/sc2seq.h [new file with mode: 0644]
sources/multicoil/sc2seq_interface.c [new file with mode: 0644]
sources/multicoil/sc2seq_interface_always_likeline.c [new file with mode: 0644]
sources/multicoil/sc2seq_interface_cuts.c [new file with mode: 0644]
sources/multicoil/scatter_ps.c [new file with mode: 0644]
sources/multicoil/scatter_ps.h [new file with mode: 0644]
sources/multicoil/scconst.h [new file with mode: 0644]
sources/multicoil/scio.c [new file with mode: 0644]
sources/multicoil/scio.h [new file with mode: 0644]
sources/multicoil/scpos.c [new file with mode: 0644]
sources/multicoil/scscore.c [new file with mode: 0644]
sources/multicoil/scscore.c,v [new file with mode: 0644]
sources/multicoil/scscore.h [new file with mode: 0644]
sources/multicoil/scsystem.c [new file with mode: 0644]
sources/multicoil/scsystem.h [new file with mode: 0644]
sources/multicoil/stats.c [new file with mode: 0644]
sources/multicoil/stats.h [new file with mode: 0644]
sources/multicoil/stats_cuts.c [new file with mode: 0644]
sources/multicoil/switches.h [new file with mode: 0644]
sources/multicoil/temp.pl [new file with mode: 0644]
sources/multicoil/test.c [new file with mode: 0644]
sources/multicoil/trimer28.txt [new file with mode: 0644]
sources/ncoils/1srya.fasta [new file with mode: 0644]
sources/ncoils/C04A11.3.fasta [new file with mode: 0644]
sources/ncoils/INSTRUCTIONS [new file with mode: 0644]
sources/ncoils/Makefile [new file with mode: 0644]
sources/ncoils/coils_old.c [new file with mode: 0644]
sources/ncoils/coils_rob.c [new file with mode: 0644]
sources/ncoils/ncoils.c [new file with mode: 0644]
sources/ncoils/ncoils.h [new file with mode: 0644]
sources/ncoils/new.mat [new file with mode: 0644]
sources/ncoils/ocoils-irix [new file with mode: 0644]
sources/ncoils/ocoils_rob-irix [new file with mode: 0644]
sources/ncoils/old.mat [new file with mode: 0644]
sources/ncoils/p17.fasta [new file with mode: 0644]
sources/ncoils/read_matrix.c [new file with mode: 0644]
sources/oc/COMPILELinux [new file with mode: 0644]
sources/oc/Makefile [new file with mode: 0644]
sources/oc/gjtimes.c [new file with mode: 0644]
sources/oc/gjtimes.h [new file with mode: 0644]
sources/oc/gjutil.c [new file with mode: 0644]
sources/oc/gjutil.h [new file with mode: 0644]
sources/oc/oc.c [new file with mode: 0644]
sources/oc/oc.h [new file with mode: 0644]
sources/oc/oc_manual.txt [new file with mode: 0644]
sources/oc/test.dis [new file with mode: 0644]
sources/oc/test.ps [new file with mode: 0644]
sources/pairwise/Doxyfile [new file with mode: 0644]
sources/pairwise/Makefile [new file with mode: 0644]
sources/pairwise/Pairwise/Changes [new file with mode: 0644]
sources/pairwise/Pairwise/MANIFEST [new file with mode: 0644]
sources/pairwise/Pairwise/Makefile.PL [new file with mode: 0644]
sources/pairwise/Pairwise/Makefile.old [new file with mode: 0644]
sources/pairwise/Pairwise/Pairwise.pm [new file with mode: 0644]
sources/pairwise/Pairwise/Pairwise.xs [new file with mode: 0644]
sources/pairwise/Pairwise/README [new file with mode: 0644]
sources/pairwise/Pairwise/ppport.h [new file with mode: 0644]
sources/pairwise/Pairwise/t/1.t [new file with mode: 0644]
sources/pairwise/Pairwise/t/foo.pl [new file with mode: 0644]
sources/pairwise/Pairwise/typemap [new file with mode: 0644]
sources/pairwise/README [new file with mode: 0644]
sources/pairwise/docs/html/annotated.html [new file with mode: 0644]
sources/pairwise/docs/html/classes.html [new file with mode: 0644]
sources/pairwise/docs/html/doxygen.css [new file with mode: 0644]
sources/pairwise/docs/html/doxygen.png [new file with mode: 0644]
sources/pairwise/docs/html/files.html [new file with mode: 0644]
sources/pairwise/docs/html/ftv2blank.png [new file with mode: 0644]
sources/pairwise/docs/html/ftv2doc.png [new file with mode: 0644]
sources/pairwise/docs/html/ftv2folderclosed.png [new file with mode: 0644]
sources/pairwise/docs/html/ftv2folderopen.png [new file with mode: 0644]
sources/pairwise/docs/html/ftv2lastnode.png [new file with mode: 0644]
sources/pairwise/docs/html/ftv2link.png [new file with mode: 0644]
sources/pairwise/docs/html/ftv2mlastnode.png [new file with mode: 0644]
sources/pairwise/docs/html/ftv2mnode.png [new file with mode: 0644]
sources/pairwise/docs/html/ftv2node.png [new file with mode: 0644]
sources/pairwise/docs/html/ftv2plastnode.png [new file with mode: 0644]
sources/pairwise/docs/html/ftv2pnode.png [new file with mode: 0644]
sources/pairwise/docs/html/ftv2vertline.png [new file with mode: 0644]
sources/pairwise/docs/html/functions.html [new file with mode: 0644]
sources/pairwise/docs/html/functions_vars.html [new file with mode: 0644]
sources/pairwise/docs/html/globals.html [new file with mode: 0644]
sources/pairwise/docs/html/globals_defs.html [new file with mode: 0644]
sources/pairwise/docs/html/globals_func.html [new file with mode: 0644]
sources/pairwise/docs/html/graph_legend.dot [new file with mode: 0644]
sources/pairwise/docs/html/graph_legend.html [new file with mode: 0644]
sources/pairwise/docs/html/graph_legend.png [new file with mode: 0644]
sources/pairwise/docs/html/index.html [new file with mode: 0644]
sources/pairwise/docs/html/main.html [new file with mode: 0644]
sources/pairwise/docs/html/pairwise_8c-source.html [new file with mode: 0644]
sources/pairwise/docs/html/pairwise_8c.html [new file with mode: 0644]
sources/pairwise/docs/html/pairwise_8c__incl.png [new file with mode: 0644]
sources/pairwise/docs/html/pairwise_8c_a10_cgraph.png [new file with mode: 0644]
sources/pairwise/docs/html/pairwise_8c_a11_cgraph.png [new file with mode: 0644]
sources/pairwise/docs/html/pairwise_8c_a12_cgraph.png [new file with mode: 0644]
sources/pairwise/docs/html/pairwise_8c_a13_cgraph.png [new file with mode: 0644]
sources/pairwise/docs/html/pairwise_8c_a14_cgraph.png [new file with mode: 0644]
sources/pairwise/docs/html/pairwise_8c_a15_cgraph.png [new file with mode: 0644]
sources/pairwise/docs/html/pairwise_8c_a16_cgraph.png [new file with mode: 0644]
sources/pairwise/docs/html/pairwise_8c_a5_cgraph.png [new file with mode: 0644]
sources/pairwise/docs/html/pairwise_8c_a6_cgraph.png [new file with mode: 0644]
sources/pairwise/docs/html/pairwise_8c_a7_cgraph.png [new file with mode: 0644]
sources/pairwise/docs/html/pairwise_8c_a8_cgraph.png [new file with mode: 0644]
sources/pairwise/docs/html/pairwise_8c_a9_cgraph.png [new file with mode: 0644]
sources/pairwise/docs/html/pairwise_8h-source.html [new file with mode: 0644]
sources/pairwise/docs/html/pairwise_8h.html [new file with mode: 0644]
sources/pairwise/docs/html/pairwise_8h__dep__incl.png [new file with mode: 0644]
sources/pairwise/docs/html/pairwise_8h__incl.png [new file with mode: 0644]
sources/pairwise/docs/html/pairwise_8h_a1_cgraph.png [new file with mode: 0644]
sources/pairwise/docs/html/pairwise_8h_a2_cgraph.png [new file with mode: 0644]
sources/pairwise/docs/html/pairwise_8h_a3_cgraph.png [new file with mode: 0644]
sources/pairwise/docs/html/pairwise_8h_a5_cgraph.png [new file with mode: 0644]
sources/pairwise/docs/html/pairwise_8h_a7_cgraph.png [new file with mode: 0644]
sources/pairwise/docs/html/pairwise_8h_a8_cgraph.png [new file with mode: 0644]
sources/pairwise/docs/html/structfasta.html [new file with mode: 0644]
sources/pairwise/docs/html/tree.html [new file with mode: 0644]
sources/pairwise/docs/html/tree.js [new file with mode: 0644]
sources/pairwise/pairwise.c [new file with mode: 0644]
sources/pairwise/pairwise.h [new file with mode: 0644]
sources/readseq/Formats [new file with mode: 0644]
sources/readseq/Make.com [new file with mode: 0644]
sources/readseq/Make.ncbi [new file with mode: 0644]
sources/readseq/Makefile [new file with mode: 0644]
sources/readseq/Readme [new file with mode: 0644]
sources/readseq/Readseq.help [new file with mode: 0644]
sources/readseq/Stdfiles [new file with mode: 0644]
sources/readseq/add.gdemenu [new file with mode: 0644]
sources/readseq/alphabet.std [new file with mode: 0644]
sources/readseq/macinit.c [new file with mode: 0644]
sources/readseq/macinit.r [new file with mode: 0644]
sources/readseq/multi.std [new file with mode: 0644]
sources/readseq/nucleic.std [new file with mode: 0644]
sources/readseq/readseq.c [new file with mode: 0644]
sources/readseq/readseqSIOW.make [new file with mode: 0644]
sources/readseq/upper.std [new file with mode: 0644]
sources/readseq/ureadasn.c [new file with mode: 0644]
sources/readseq/ureadseq.c [new file with mode: 0644]
sources/readseq/ureadseq.h [new file with mode: 0644]
sources/readseq/wget.txt [new file with mode: 0644]
sources/seg/README [new file with mode: 0644]
sources/seg/genwin.c [new file with mode: 0644]
sources/seg/genwin.h [new file with mode: 0644]
sources/seg/hiseg.c [new file with mode: 0644]
sources/seg/lnfac.h [new file with mode: 0644]
sources/seg/makefile [new file with mode: 0644]
sources/seg/seg.c [new file with mode: 0644]
sources/seg/seg.doc [new file with mode: 0644]
sources/seg/seg.sgi.iris5 [new file with mode: 0644]
sources/seg/seg.sun.sunos4 [new file with mode: 0644]
sources/sov/Makefile [new file with mode: 0644]
sources/sov/README.sov [new file with mode: 0644]
sources/sov/sov.c [new file with mode: 0644]