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JPRED-2 Add sources of all binaries (except alscript) to Git
authorSasha Sherstnev <a.sherstnev@dundee.ac.uk>
Mon, 18 Nov 2013 16:50:15 +0000 (16:50 +0000)
committerSasha Sherstnev <a.sherstnev@dundee.ac.uk>
Mon, 18 Nov 2013 16:50:15 +0000 (16:50 +0000)
commit9aa768067094f24f46f273077f867348e6143711
tree568dd293a8ee53a8c719e04613936e867d15a048tree | snapshot
parenteb3001dc41bf6cd46e20fd13fe3efbe9dedf6013commit | diff
JPRED-2 Add sources of all binaries (except alscript) to Git
249 files changed:
sources/jnet/COPYING [new file with mode: 0644] blob
sources/jnet/Makefile [new file with mode: 0644] blob
sources/jnet/cmdline/Makefile [new file with mode: 0644] blob
sources/jnet/cmdline/cmdline.c [new file with mode: 0644] blob
sources/jnet/cmdline/cmdline.ggo [new file with mode: 0644] blob
sources/jnet/cmdline/cmdline.h [new file with mode: 0644] blob
sources/jnet/hmm1.c [new file with mode: 0644] blob
sources/jnet/hmm1.h [new file with mode: 0644] blob
sources/jnet/hmm2.c [new file with mode: 0644] blob
sources/jnet/hmm2.h [new file with mode: 0644] blob
sources/jnet/hmmsol0.c [new file with mode: 0644] blob
sources/jnet/hmmsol0.h [new file with mode: 0644] blob
sources/jnet/hmmsol25.c [new file with mode: 0644] blob
sources/jnet/hmmsol25.h [new file with mode: 0644] blob
sources/jnet/hmmsol5.c [new file with mode: 0644] blob
sources/jnet/hmmsol5.h [new file with mode: 0644] blob
sources/jnet/jnet.c [new file with mode: 0644] blob
sources/jnet/jnet.c~ [new file with mode: 0644] blob
sources/jnet/psisol0.c [new file with mode: 0644] blob
sources/jnet/psisol0.h [new file with mode: 0644] blob
sources/jnet/psisol25.c [new file with mode: 0644] blob
sources/jnet/psisol25.h [new file with mode: 0644] blob
sources/jnet/psisol5.c [new file with mode: 0644] blob
sources/jnet/psisol5.h [new file with mode: 0644] blob
sources/jnet/pssma1.c [new file with mode: 0644] blob
sources/jnet/pssma1.h [new file with mode: 0644] blob
sources/jnet/pssma2.c [new file with mode: 0644] blob
sources/jnet/pssma2.h [new file with mode: 0644] blob
sources/jnet/pssmb1.c [new file with mode: 0644] blob
sources/jnet/pssmb1.h [new file with mode: 0644] blob
sources/jnet/pssmb2.c [new file with mode: 0644] blob
sources/jnet/pssmb2.h [new file with mode: 0644] blob
sources/jnet/test/d1b65a_.hmm [new file with mode: 0644] blob
sources/jnet/test/d1b65a_.jnet [new file with mode: 0644] blob
sources/jnet/test/d1b65a_.pssm [new file with mode: 0644] blob
sources/multicoil/Multicoil.tar.gz [new file with mode: 0644] blob
sources/multicoil/PairCoilDiffer.c [new file with mode: 0644] blob
sources/multicoil/PairCoilDiffer_cuts.c [new file with mode: 0644] blob
sources/multicoil/cgi-bin-data.out [new file with mode: 0644] blob
sources/multicoil/compute_like.c [new file with mode: 0644] blob
sources/multicoil/compute_like.h [new file with mode: 0644] blob
sources/multicoil/config.h [new file with mode: 0644] blob
sources/multicoil/data.log [new file with mode: 0644] blob
sources/multicoil/data.out [new file with mode: 0644] blob
sources/multicoil/data64.log [new file with mode: 0644] blob
sources/multicoil/data64.out [new file with mode: 0644] blob
sources/multicoil/debug_printout_flag.h [new file with mode: 0644] blob
sources/multicoil/dimer28.txt [new file with mode: 0644] blob
sources/multicoil/dump [new file with mode: 0644] blob
sources/multicoil/dump2 [new file with mode: 0644] blob
sources/multicoil/dump32 [new file with mode: 0644] blob
sources/multicoil/dump64 [new file with mode: 0644] blob
sources/multicoil/dyn.c [new file with mode: 0644] blob
sources/multicoil/estimate_probabilities.c [new file with mode: 0644] blob
sources/multicoil/estimate_probabilities_cuts.c [new file with mode: 0644] blob
sources/multicoil/gauss_parameters_combo21 [new file with mode: 0644] blob
sources/multicoil/gauss_parameters_combo28 [new file with mode: 0644] blob
sources/multicoil/genbnk.txt [new file with mode: 0644] blob
sources/multicoil/get_defaults.c [new file with mode: 0644] blob
sources/multicoil/get_defaults_cuts.c [new file with mode: 0644] blob
sources/multicoil/hmm.c [new file with mode: 0644] blob
sources/multicoil/hmm.h [new file with mode: 0644] blob
sources/multicoil/initialization.c [new file with mode: 0644] blob
sources/multicoil/initialization_cuts.c [new file with mode: 0644] blob
sources/multicoil/interface.c [new file with mode: 0644] blob
sources/multicoil/interface.h [new file with mode: 0644] blob
sources/multicoil/interface_cuts.c [new file with mode: 0644] blob
sources/multicoil/interface_old.c [new file with mode: 0644] blob
sources/multicoil/interface_precuts.c [new file with mode: 0644] blob
sources/multicoil/junk.c [new file with mode: 0644] blob
sources/multicoil/lib/cctb28.Z [new file with mode: 0644] blob
sources/multicoil/lib/dimer28.txt [new file with mode: 0644] blob
sources/multicoil/lib/gauss_parameters_combo21 [new file with mode: 0644] blob
sources/multicoil/lib/gauss_parameters_combo28 [new file with mode: 0644] blob
sources/multicoil/lib/genbnk.Z [new file with mode: 0644] blob
sources/multicoil/lib/genbnk.txt [new file with mode: 0644] blob
sources/multicoil/lib/trimer28 [new file with mode: 0644] blob
sources/multicoil/lib/trimer28.txt [new file with mode: 0644] blob
sources/multicoil/likelihood.h [new file with mode: 0644] blob
sources/multicoil/makefile [new file with mode: 0644] blob
sources/multicoil/matrix_operations.c [new file with mode: 0644] blob
sources/multicoil/mc_config [new file with mode: 0644] blob
sources/multicoil/methods.c [new file with mode: 0644] blob
sources/multicoil/methods.h [new file with mode: 0644] blob
sources/multicoil/multicoil_config [new file with mode: 0644] blob
sources/multicoil/multivariate_like2.c [new file with mode: 0644] blob
sources/multicoil/multivariate_like2_cuts.c [new file with mode: 0644] blob
sources/multicoil/murine.seq [new file with mode: 0644] blob
sources/multicoil/nrutil.c [new file with mode: 0644] blob
sources/multicoil/nrutil.h [new file with mode: 0644] blob
sources/multicoil/one_score_per_pos.c [new file with mode: 0644] blob
sources/multicoil/one_score_per_pos_cuts.c [new file with mode: 0644] blob
sources/multicoil/options.h [new file with mode: 0644] blob
sources/multicoil/output.c [new file with mode: 0644] blob
sources/multicoil/output_cuts.c [new file with mode: 0644] blob
sources/multicoil/postscript.c [new file with mode: 0644] blob
sources/multicoil/postscript.h [new file with mode: 0644] blob
sources/multicoil/sc.h [new file with mode: 0644] blob
sources/multicoil/sc2seq.h [new file with mode: 0644] blob
sources/multicoil/sc2seq_interface.c [new file with mode: 0644] blob
sources/multicoil/sc2seq_interface_always_likeline.c [new file with mode: 0644] blob
sources/multicoil/sc2seq_interface_cuts.c [new file with mode: 0644] blob
sources/multicoil/scatter_ps.c [new file with mode: 0644] blob
sources/multicoil/scatter_ps.h [new file with mode: 0644] blob
sources/multicoil/scconst.h [new file with mode: 0644] blob
sources/multicoil/scio.c [new file with mode: 0644] blob
sources/multicoil/scio.h [new file with mode: 0644] blob
sources/multicoil/scpos.c [new file with mode: 0644] blob
sources/multicoil/scscore.c [new file with mode: 0644] blob
sources/multicoil/scscore.c,v [new file with mode: 0644] blob
sources/multicoil/scscore.h [new file with mode: 0644] blob
sources/multicoil/scsystem.c [new file with mode: 0644] blob
sources/multicoil/scsystem.h [new file with mode: 0644] blob
sources/multicoil/stats.c [new file with mode: 0644] blob
sources/multicoil/stats.h [new file with mode: 0644] blob
sources/multicoil/stats_cuts.c [new file with mode: 0644] blob
sources/multicoil/switches.h [new file with mode: 0644] blob
sources/multicoil/temp.pl [new file with mode: 0644] blob
sources/multicoil/test.c [new file with mode: 0644] blob
sources/multicoil/trimer28.txt [new file with mode: 0644] blob
sources/ncoils/1srya.fasta [new file with mode: 0644] blob
sources/ncoils/C04A11.3.fasta [new file with mode: 0644] blob
sources/ncoils/INSTRUCTIONS [new file with mode: 0644] blob
sources/ncoils/Makefile [new file with mode: 0644] blob
sources/ncoils/coils_old.c [new file with mode: 0644] blob
sources/ncoils/coils_rob.c [new file with mode: 0644] blob
sources/ncoils/ncoils.c [new file with mode: 0644] blob
sources/ncoils/ncoils.h [new file with mode: 0644] blob
sources/ncoils/new.mat [new file with mode: 0644] blob
sources/ncoils/ocoils-irix [new file with mode: 0644] blob
sources/ncoils/ocoils_rob-irix [new file with mode: 0644] blob
sources/ncoils/old.mat [new file with mode: 0644] blob
sources/ncoils/p17.fasta [new file with mode: 0644] blob
sources/ncoils/read_matrix.c [new file with mode: 0644] blob
sources/oc/COMPILELinux [new file with mode: 0644] blob
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sources/oc/gjtimes.c [new file with mode: 0644] blob
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sources/oc/gjutil.c [new file with mode: 0644] blob
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sources/oc/oc.c [new file with mode: 0644] blob
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sources/oc/oc_manual.txt [new file with mode: 0644] blob
sources/oc/test.dis [new file with mode: 0644] blob
sources/oc/test.ps [new file with mode: 0644] blob
sources/pairwise/Doxyfile [new file with mode: 0644] blob
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sources/pairwise/Pairwise/Changes [new file with mode: 0644] blob
sources/pairwise/Pairwise/MANIFEST [new file with mode: 0644] blob
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sources/pairwise/Pairwise/Pairwise.pm [new file with mode: 0644] blob
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sources/pairwise/Pairwise/typemap [new file with mode: 0644] blob
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