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(parent: eb3001d) | patch
JPRED-2 copy the portable branch into Git
authorSasha Sherstnev <a.sherstnev@dundee.ac.uk>
Mon, 18 Nov 2013 14:48:07 +0000 (14:48 +0000)
committerSasha Sherstnev <a.sherstnev@dundee.ac.uk>
Mon, 18 Nov 2013 14:48:07 +0000 (14:48 +0000)
commitdf24dcd3c415c000592af419f2c9304a4e05c2ee
tree102f32b16405ee7a431aad0b09299dfd74155026tree | snapshot
parenteb3001dc41bf6cd46e20fd13fe3efbe9dedf6013commit | diff
JPRED-2 copy the portable branch into Git
68 files changed:
jpred/data/blast/BLOSUM45 [new file with mode: 0755] blob
jpred/data/blast/BLOSUM62 [new file with mode: 0755] blob
jpred/data/blast/BLOSUM80 [new file with mode: 0755] blob
jpred/data/blast/KSat.flt [new file with mode: 0755] blob
jpred/data/blast/KSchoth.flt [new file with mode: 0755] blob
jpred/data/blast/KSgc.flt [new file with mode: 0755] blob
jpred/data/blast/KShopp.flt [new file with mode: 0755] blob
jpred/data/blast/KSkyte.flt [new file with mode: 0755] blob
jpred/data/blast/KSpcc.mat [new file with mode: 0755] blob
jpred/data/blast/KSpur.flt [new file with mode: 0755] blob
jpred/data/blast/KSpyr.flt [new file with mode: 0755] blob
jpred/data/blast/PAM30 [new file with mode: 0755] blob
jpred/data/blast/PAM70 [new file with mode: 0755] blob
jpred/data/blast/asn2ff.prt [new file with mode: 0755] blob
jpred/data/blast/bstdt.val [new file with mode: 0755] blob
jpred/data/blast/featdef.val [new file with mode: 0755] blob
jpred/data/blast/gc.val [new file with mode: 0755] blob
jpred/data/blast/humrep.fsa [new file with mode: 0755] blob
jpred/data/blast/lineages.txt [new file with mode: 0755] blob
jpred/data/blast/makerpt.prt [new file with mode: 0755] blob
jpred/data/blast/objprt.prt [new file with mode: 0755] blob
jpred/data/blast/pubkey.enc [new file with mode: 0755] blob
jpred/data/blast/seqcode.val [new file with mode: 0755] blob
jpred/data/blast/sequin.hlp [new file with mode: 0755] blob
jpred/data/blast/sgmlbb.ent [new file with mode: 0755] blob
jpred/data/blast/taxlist.txt [new file with mode: 0755] blob
jpred/data/coils/new.mat [new file with mode: 0755] blob
jpred/i686/blastpgp [new file with mode: 0755] blob
jpred/i686/fastacmd [new file with mode: 0755] blob
jpred/i686/hmmbuild [new file with mode: 0755] blob
jpred/i686/hmmconvert [new file with mode: 0755] blob
jpred/i686/jnet [new file with mode: 0755] blob
jpred/i686/oc [new file with mode: 0755] blob
jpred/i686/pairwise [new file with mode: 0755] blob
jpred/jpred [deleted file] blob | history
jpred/jpred.pl [new file with mode: 0755] blob
jpred/jpred_jabaws.pl [new file with mode: 0755] blob
jpred/lib/BLC.pm diff | blob | history
jpred/lib/DSSP/SCOP.pm diff | blob | history
jpred/lib/Index/EMBOSS.pm diff | blob | history
jpred/lib/Index/FastaCMD.pm diff | blob | history
jpred/lib/Jpred.pm diff | blob | history
jpred/lib/OC.pm diff | blob | history
jpred/lib/PSIBLAST.pm diff | blob | history
jpred/lib/PSIBLAST/Run.pm diff | blob | history
jpred/lib/Pairwise.pm diff | blob | history
jpred/lib/Paths.pm diff | blob | history
jpred/lib/Profile/Jnet.pm diff | blob | history
jpred/lib/Read.pm diff | blob | history
jpred/lib/Sequence/File.pm diff | blob | history
jpred/lib/Utils.pm diff | blob | history
jpred/lib/Write.pm diff | blob | history
jpred/tests/SCOP175B_nr.fas [new file with mode: 0644] blob
jpred/tests/T-state1.fas [new file with mode: 0644] blob
jpred/tests/T-state2.fas [new file with mode: 0644] blob
jpred/tests/alignment.clustal [new file with mode: 0644] blob
jpred/tests/alignment.fasta [new file with mode: 0644] blob
jpred/tests/alignment.msf [new file with mode: 0644] blob
jpred/tests/d16vpa_.fas [new file with mode: 0644] blob
jpred/tests/d1b3aa_.fas [new file with mode: 0644] blob
jpred/tests/todo.bash [new file with mode: 0755] blob
jpred/x86_64/blastpgp [moved from jpred/bin/blastpgp with 100% similarity] blob | history
jpred/x86_64/fastacmd [moved from jpred/bin/fastacmd with 100% similarity] blob | history
jpred/x86_64/hmmbuild [moved from jpred/bin/hmmbuild with 100% similarity] blob | history
jpred/x86_64/hmmconvert [moved from jpred/bin/hmmconvert with 100% similarity] blob | history
jpred/x86_64/jnet [moved from jpred/bin/jnet with 100% similarity] blob | history
jpred/x86_64/oc [moved from jpred/bin/oc with 100% similarity] blob | history
jpred/x86_64/pairwise [moved from jpred/bin/pairwise with 100% similarity] blob | history