## Uncomment to enable ProteoCache activity logging
## Valid log levels are:
## TRACE - log everything from below including very detailed messages (useful for debugging only)
## DEBUG - log everything from below including some minor events (useful for debugging only)
## INFO - log everything from below including some information messages
## WARN - log error and warnings
## ERROR - log errors and fatal events only 
## FATAL - log fatal events only

# To see debug messages in TldLocationsCache, uncomment the following line:
#org.apache.jasper.compiler.TldLocationsCache.level = FINE
org.apache.catalina.core.ContainerBase.[Catalina].[localhost].level = FINE

## Uncomment this if you would like the system to log messages into stdout
#log4j.rootLogger=TRACE, rootfile
#log4j.appender.rootfile=org.apache.log4j.RollingFileAppender
#log4j.appender.rootfile.File=JABAWSLogFilename.log
#log4j.appender.rootfile.Target=System.out
#log4j.appender.rootfile.layout=org.apache.log4j.PatternLayout
#log4j.appender.rootfile.layout.ConversionPattern=%t %d %m%n

## Uncomment to enable JWS2 activity logging to the file
#logDir = .
#log4j.logger.compbio=TRACE, ACTIVITY
#log4j.appender.ACTIVITY=org.apache.log4j.RollingFileAppender
################log4j.appender.ACTIVITY.File=${logDir}/activity.log
#log4j.appender.ACTIVITY.File=${catalina.base}/logs/JABAWSLogFilename.log
#log4j.appender.ACTIVITY.MaxFileSize=10MB
#log4j.appender.ACTIVITY.MaxBackupIndex=10000
#log4j.appender.ACTIVITY.layout=org.apache.log4j.PatternLayout
#log4j.appender.ACTIVITY.layout.ConversionPattern=%d{MM-dd@HH:mm:ss} %-5p %3x - %m%n

## Uncomment for separate local engine execution log (debugging only)
#log4j.logger.compbio.engine.local.LocalExecutorService=INFO, C
#log4j.appender.C=org.apache.log4j.FileAppender
#log4j.appender.C.File=LocalExecutorService.log
#log4j.appender.C.layout=org.apache.log4j.PatternLayout
#log4j.appender.C.layout.ConversionPattern=%m%n

##################################################################################################################################
#log4j.appender.stdout=org.apache.log4j.ConsoleAppender
#log4j.appender.stdout.Target=System.out
#log4j.appender.stdout.layout=org.apache.log4j.PatternLayout
#log4j.appender.stdout.layout.ConversionPattern=%m%n
#log4j.rootLogger=info, stdout

log4j.rootLogger=ERROR, R
log4j.appender.R=org.apache.log4j.FileAppender
log4j.appender.R.File=${catalina.base}/logs/errors.log
log4j.appender.R.layout=org.apache.log4j.PatternLayout
log4j.appender.R.layout.ConversionPattern=%m%n %d{MM-dd@HH:mm:ss} %-5p (%13F:%L) %3x - 

# %d{ABSOLUTE} %5p %c{1}:%L -
log4j.logger.compbio=DEBIG, B
log4j.appender.B=org.apache.log4j.FileAppender
log4j.appender.B.File=${catalina.base}/logs/debugging.log
log4j.appender.B.layout=org.apache.log4j.PatternLayout
log4j.appender.B.layout.ConversionPattern=%m%n %d{MM-dd@HH:mm:ss} %-5p (%13F:%L) %3x - 

log4j.category.org.springframework=ALL

# %d{ABSOLUTE} %5p %c{1}:%L -
#log4j.logger.compbio.engine.local.LocalExecutorService=INFO, C
#log4j.appender.C=org.apache.log4j.FileAppender
#log4j.appender.C.File=LocalExecutorService.log
#log4j.appender.C.layout=org.apache.log4j.PatternLayout
#log4j.appender.C.layout.ConversionPattern=%m%n
# %d{MM-dd@HH:mm:ss} %-5p (%13F:%L) %3x -