package compbio.controllers; import java.io.IOException; import java.net.HttpURLConnection; import java.net.URL; import java.util.Calendar; import java.util.Map; import org.apache.log4j.Logger; import org.springframework.stereotype.Controller; import org.springframework.web.bind.annotation.RequestMapping; import org.springframework.web.bind.annotation.RequestMethod; import org.springframework.web.bind.annotation.RequestParam; import compbio.statistic.CassandraRequester; import compbio.beans.ExecutionTimeBean; import compbio.beans.TotalExecutionTime; import compbio.cassandra.DateFormatter; import compbio.cassandra.readers.CassandraReader; import compbio.cassandra.readers.ExecutionTimeReader; import compbio.cassandra.readers.JobReader; import compbio.engine.archive.ArchivedJob; /** * @author Alexander Sherstnev * @author Natasha Sherstneva * @version 1.0 Dec 2013 */ @Controller public class JobController extends BasicController { private static Logger log = Logger.getLogger(JobController.class); /** * form a query page for job execution time statistics. The servlet should * be available for users and admins only. By defaults the report time range * is from the earliest day with jobs to today ("Query for all dates" is * ticked). If the user removes the tick the time range is from today - 3 * days to today. Currently, the input model is empty. * * @param model * MVC model * @return link to the JSP query page */ @RequestMapping(value = "/stat/exectime/query", method = RequestMethod.GET) public String initFormExecTime(Map model) { model.put("username", getPrincipalName()); Calendar cal = Calendar.getInstance(); String date2 = cal.get(Calendar.YEAR) + "/" + (cal.get(Calendar.MONTH) + 1) + "/" + cal.get(Calendar.DATE); cal.add(Calendar.DATE, -3); String date1 = cal.get(Calendar.YEAR) + "/" + (cal.get(Calendar.MONTH) + 1) + "/" + cal.get(Calendar.DATE); model.put("date1", date1); model.put("date2", date2); return "query/JobTimeExecution"; } /** * form a query page for a job. The servlet should no be visible to users at * all. * * @param model * MVC model * @return link to the JSP query page */ @RequestMapping(value = "/job/query", method = RequestMethod.GET) public String initFindForm(Map model) { model.put("username", getPrincipalName()); CassandraRequester cr = new CassandraRequester(); model.put("value", cr.getExample("jobid")); return "query/JobLog"; } /** * form a report page for a job execution time statistics. * * @param model * MVC model * @return link to the JSP query page */ @RequestMapping(value = "/stat/exectime/results", method = RequestMethod.GET) public String findExecTimeData(@RequestParam("date1") String date1, @RequestParam("date2") String date2, @RequestParam(value = "option", required = false) String option, Map model) { model.put("username", getPrincipalName()); final long startTime = System.currentTimeMillis(); Calendar loccal = Calendar.getInstance(); ExecutionTimeReader reader = new ExecutionTimeReader(); if (option.equals("AllDates,off")) { date1 = theEaerlistDate; date2 = theCurrentDate; } // dates in string format String trimmeddate1 = date1.replaceAll("\\s", ""); String trimmeddate2 = date2.replaceAll("\\s", ""); // dates in long format long longDate1 = DateFormatter.DateParsing(date1, formaterYYMMDD); long longDate2 = DateFormatter.DateParsing(date2, formaterYYMMDD); String error = DateChecking(trimmeddate1, trimmeddate2, longDate1, longDate2); if (error != null) { model.put("error", error); model.put("date1", date1); model.put("date2", date2); return "query/JobTimeExecution"; } if (longDate1 < CassandraReader.earliestDate()) longDate1 = CassandraReader.earliestDate(); if (longDate2 > loccal.getTimeInMillis()) longDate2 = loccal.getTimeInMillis(); date1 = DateFormatter.DateLongToString(longDate1, formaterYYMMDD); date2 = DateFormatter.DateLongToString(longDate2, formaterYYMMDD); model.put("date1", date1); model.put("date2", date2); model.put("option", option); ExecutionTimeBean res = reader.query(longDate1, longDate2);; model.put("result", res); Map results = res.getDateTotal(); String csvline = ""; if (0 < res.getDateTotal().size()) { csvline = "\'Date\',\'Total\',\'0-30 sec\',\'30-60 sec\',\'1-2 min\',\'2-10 min\',\'more 10 min\'%0A"; for (Map.Entry entry : results.entrySet()) { csvline += "\'" + entry.getKey() + "\',\'" + entry.getValue().getTotal() + "\',\'" + entry.getValue().getTotal0_30s() + "\',\'" + entry.getValue().getTotal30_60s() + "\',\'" + entry.getValue().getTotal1_2m() + "\',\'" + entry.getValue().getTotal2_10m() + "\',\'" + entry.getValue().getTotal10m() + "\'%0A"; } } model.put("csvfile", csvline); model.put("ndays", res.getDateTotal().size() - 1); final long endTime = System.currentTimeMillis(); model.put("timeExecution", (endTime - startTime)); return "/reports/TimeExecution"; } /** * form a query page for a job. The servlet should no be visible to users at * all. * * @param model * MVC model * @return link to the JSP query page * @throws IOException */ @RequestMapping(value = "/job/results", method = RequestMethod.GET) public String findJob(@RequestParam("IdJob") String jobid, Map model) throws IOException { model.put("username", getPrincipalName()); final long startTime = System.currentTimeMillis(); JobReader reader = new JobReader(); model.put("result", reader.readJobLog(jobid)); final long endTime = System.currentTimeMillis(); model.put("timeExecution", (endTime - startTime)); model.put("IdJob", jobid); ArchivedJob aj = new ArchivedJob(jobid); try { model.put("jobarchive", aj.prepareJobArchiveToWeb()); } catch (IOException e) { log.error("JobController.prepareJobArchiveToWeb: IO exception with job archive file"); log.error(e.getLocalizedMessage(), e.getCause()); } // add a direct link to the job String remotelink = "http://www.compbio.dundee.ac.uk/www-jpred/results/" + jobid + "/" + jobid + ".results.html"; URL remotelinkurl = new URL(remotelink); HttpURLConnection httpConnection_remotelinkurl = (HttpURLConnection) remotelinkurl.openConnection(); if (199 < httpConnection_remotelinkurl.getResponseCode() && httpConnection_remotelinkurl.getResponseCode() < 300) { model.put("jobremotelink", remotelink); } return "reports/Job"; } }