From de57af5ff96e33b09baeb5e77ce29dbc8c7e7fec Mon Sep 17 00:00:00 2001
From: Sasha Sherstnev <a.sherstnev@dundee.ac.uk>
Date: Mon, 3 Feb 2014 10:26:34 +0000
Subject: [PATCH] Add comments to bean internal data

---
 datadb/compbio/beans/ProteinBean.java |   22 +++++++++++++++-------
 1 file changed, 15 insertions(+), 7 deletions(-)

diff --git a/datadb/compbio/beans/ProteinBean.java b/datadb/compbio/beans/ProteinBean.java
index 958eab5..8c7c446 100644
--- a/datadb/compbio/beans/ProteinBean.java
+++ b/datadb/compbio/beans/ProteinBean.java
@@ -7,14 +7,22 @@ import java.util.Map;
 
 import compbio.cassandra.PredictionIndex;
 
+/**
+ * POJO bean with information on a protein
+ * 
+ * @author Natasha Sherstneva
+ * 
+ * @version 1.0
+ * @since Jan 2014
+ */
 public class ProteinBean implements PredictionIndex {
-	private String sequence;
-	private String jnetpred;
-	private List<String> jobid;
-	private LinkedHashMap<String, String> predictions;
-	private List<String> subProt; // protein sequence divided by several parts
-									// for highlighting the particular part
-	private int size;
+	private String sequence; // protein sequence
+	private String jnetpred; // the main Jpred prediction sequence
+	private List<String> jobid;  // job IDd: all jobs with the protein
+	private LinkedHashMap<String, String> predictions; // predictions: Key - prediction ID, Value - prediction sequence
+	private List<String> subProt; // protein sequence divided in several parts
+									// for highlighting a particular part
+	private int size; // a number of predictions for the protein
 
 	public ProteinBean(String seq, Map<String, String> pred) {
 		this.sequence = seq;
-- 
1.7.10.2