* Note: Just in case the collection contents are changing in another thread, * we pass a 0-length Array of the correct type into the API call. This way we * know that the Array returned is of exactly the correct length. * * @return this collection as an Array */ public uk.ac.vamsas.objects.core.Glyph[] getGlyph() { uk.ac.vamsas.objects.core.Glyph[] array = new uk.ac.vamsas.objects.core.Glyph[0]; return (uk.ac.vamsas.objects.core.Glyph[]) this._glyphList.toArray(array); } /** * Method getGlyphAsReference.Returns a reference to '_glyphList'. No type * checking is performed on any modifications to the Vector. * * @return a reference to the Vector backing this class */ public java.util.Vector getGlyphAsReference() { return this._glyphList; } /** * Method getGlyphCount. * * @return the size of this collection */ public int getGlyphCount() { return this._glyphList.size(); } /** * Returns the value of field 'id'. The field 'id' has the following * description: Primary Key for vamsas object referencing * * @return the value of field 'Id'. */ public java.lang.String getId() { return this._id; } /** * Returns the value of field 'position'. The field 'position' has the * following description: position with respect to the coordinate frame * defined by a rangeType specification * * @return the value of field 'Position'. */ public long getPosition() { return this._position; } /** * Method getValue. * * @param index * @throws java.lang.IndexOutOfBoundsException * if the index given is outside the bounds of the collection * @return the value of the float at the given index */ public float getValue(final int index) throws java.lang.IndexOutOfBoundsException { // check bounds for index if (index < 0 || index >= this._valueList.size()) { throw new IndexOutOfBoundsException("getValue: Index value '" + index + "' not in range [0.." + (this._valueList.size() - 1) + "]"); } return ((java.lang.Float) _valueList.get(index)).floatValue(); } /** * Method getValue.Returns the contents of the collection in an Array. * * @return this collection as an Array */ public float[] getValue() { int size = this._valueList.size(); float[] array = new float[size]; java.util.Iterator iter = _valueList.iterator(); for (int index = 0; index < size; index++) { array[index] = ((java.lang.Float) iter.next()).floatValue(); } return array; } /** * Method getValueAsReference.Returns a reference to '_valueList'. No type * checking is performed on any modifications to the Vector. * * @return a reference to the Vector backing this class */ public java.util.Vector getValueAsReference() { return this._valueList; } /** * Method getValueCount. * * @return the size of this collection */ public int getValueCount() { return this._valueList.size(); } /** * Method hasAfter. * * @return true if at least one After has been added */ public boolean hasAfter() { return this._has_after; } /** * Method hasPosition. * * @return true if at least one Position has been added */ public boolean hasPosition() { return this._has_position; } /** * Overrides the java.lang.Object.hashCode method. *
* The following steps came from Effective Java Programming Language * Guide by Joshua Bloch, Chapter 3 * * @return a hash code value for the object. */ public int hashCode() { int result = super.hashCode(); long tmp; result = 37 * result + (int) (_position ^ (_position >>> 32)); result = 37 * result + (_after ? 0 : 1); if (_id != null && !org.castor.util.CycleBreaker.startingToCycle(_id)) { result = 37 * result + _id.hashCode(); org.castor.util.CycleBreaker.releaseCycleHandle(_id); } if (_description != null && !org.castor.util.CycleBreaker.startingToCycle(_description)) { result = 37 * result + _description.hashCode(); org.castor.util.CycleBreaker.releaseCycleHandle(_description); } if (_glyphList != null && !org.castor.util.CycleBreaker.startingToCycle(_glyphList)) { result = 37 * result + _glyphList.hashCode(); org.castor.util.CycleBreaker.releaseCycleHandle(_glyphList); } if (_valueList != null && !org.castor.util.CycleBreaker.startingToCycle(_valueList)) { result = 37 * result + _valueList.hashCode(); org.castor.util.CycleBreaker.releaseCycleHandle(_valueList); } return result; } /** * Returns the value of field 'after'. The field 'after' has the following * description: true means the annotation element appears between the * specified position and the next * * @return the value of field 'After'. */ public boolean isAfter() { return this._after; } /** * Method isValid. * * @return true if this object is valid according to the schema */ public boolean isValid() { try { validate(); } catch (org.exolab.castor.xml.ValidationException vex) { return false; } return true; } /** * * * @param out * @throws org.exolab.castor.xml.MarshalException * if object is null or if any SAXException is thrown during * marshaling * @throws org.exolab.castor.xml.ValidationException * if this object is an invalid instance according to the schema */ public void marshal(final java.io.Writer out) throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException { Marshaller.marshal(this, out); } /** * * * @param handler * @throws java.io.IOException * if an IOException occurs during marshaling * @throws org.exolab.castor.xml.ValidationException * if this object is an invalid instance according to the schema * @throws org.exolab.castor.xml.MarshalException * if object is null or if any SAXException is thrown during * marshaling */ public void marshal(final org.xml.sax.ContentHandler handler) throws java.io.IOException, org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException { Marshaller.marshal(this, handler); } /** */ public void removeAllGlyph() { this._glyphList.clear(); } /** */ public void removeAllValue() { this._valueList.clear(); } /** * Method removeGlyph. * * @param vGlyph * @return true if the object was removed from the collection. */ public boolean removeGlyph(final uk.ac.vamsas.objects.core.Glyph vGlyph) { boolean removed = _glyphList.remove(vGlyph); return removed; } /** * Method removeGlyphAt. * * @param index * @return the element removed from the collection */ public uk.ac.vamsas.objects.core.Glyph removeGlyphAt(final int index) { java.lang.Object obj = this._glyphList.remove(index); return (uk.ac.vamsas.objects.core.Glyph) obj; } /** * Method removeValue. * * @param vValue * @return true if the object was removed from the collection. */ public boolean removeValue(final float vValue) { boolean removed = _valueList.remove(new java.lang.Float(vValue)); return removed; } /** * Method removeValueAt. * * @param index * @return the element removed from the collection */ public float removeValueAt(final int index) { java.lang.Object obj = this._valueList.remove(index); return ((java.lang.Float) obj).floatValue(); } /** * Sets the value of field 'after'. The field 'after' has the following * description: true means the annotation element appears between the * specified position and the next * * @param after * the value of field 'after'. */ public void setAfter(final boolean after) { this._after = after; this._has_after = true; } /** * Sets the value of field 'description'. The field 'description' has the * following description: Free text at this position * * @param description * the value of field 'description'. */ public void setDescription(final java.lang.String description) { this._description = description; } /** * * * @param index * @param vGlyph * @throws java.lang.IndexOutOfBoundsException * if the index given is outside the bounds of the collection */ public void setGlyph(final int index, final uk.ac.vamsas.objects.core.Glyph vGlyph) throws java.lang.IndexOutOfBoundsException { // check bounds for index if (index < 0 || index >= this._glyphList.size()) { throw new IndexOutOfBoundsException("setGlyph: Index value '" + index + "' not in range [0.." + (this._glyphList.size() - 1) + "]"); } this._glyphList.set(index, vGlyph); } /** * * * @param vGlyphArray */ public void setGlyph(final uk.ac.vamsas.objects.core.Glyph[] vGlyphArray) { // -- copy array _glyphList.clear(); for (int i = 0; i < vGlyphArray.length; i++) { this._glyphList.add(vGlyphArray[i]); } } /** * Sets the value of '_glyphList' by copying the given Vector. All elements * will be checked for type safety. * * @param vGlyphList * the Vector to copy. */ public void setGlyph(final java.util.Vector vGlyphList) { // copy vector this._glyphList.clear(); this._glyphList.addAll(vGlyphList); } /** * Sets the value of '_glyphList' by setting it to the given Vector. No type * checking is performed. * * @deprecated * * @param glyphVector * the Vector to set. */ public void setGlyphAsReference(final java.util.Vector glyphVector) { this._glyphList = glyphVector; } /** * Sets the value of field 'id'. The field 'id' has the following description: * Primary Key for vamsas object referencing * * @param id * the value of field 'id'. */ public void setId(final java.lang.String id) { this._id = id; } /** * Sets the value of field 'position'. The field 'position' has the following * description: position with respect to the coordinate frame defined by a * rangeType specification * * @param position * the value of field 'position'. */ public void setPosition(final long position) { this._position = position; this._has_position = true; } /** * * * @param index * @param vValue * @throws java.lang.IndexOutOfBoundsException * if the index given is outside the bounds of the collection */ public void setValue(final int index, final float vValue) throws java.lang.IndexOutOfBoundsException { // check bounds for index if (index < 0 || index >= this._valueList.size()) { throw new IndexOutOfBoundsException("setValue: Index value '" + index + "' not in range [0.." + (this._valueList.size() - 1) + "]"); } this._valueList.set(index, new java.lang.Float(vValue)); } /** * * * @param vValueArray */ public void setValue(final float[] vValueArray) { // -- copy array _valueList.clear(); for (int i = 0; i < vValueArray.length; i++) { this._valueList.add(new java.lang.Float(vValueArray[i])); } } /** * Sets the value of '_valueList' by copying the given Vector. All elements * will be checked for type safety. * * @param vValueList * the Vector to copy. */ public void setValue(final java.util.Vector vValueList) { // copy vector this._valueList.clear(); this._valueList.addAll(vValueList); } /** * Sets the value of '_valueList' by setting it to the given Vector. No type * checking is performed. * * @deprecated * * @param valueVector * the Vector to set. */ public void setValueAsReference(final java.util.Vector valueVector) { this._valueList = valueVector; } /** * Method unmarshal. * * @param reader * @throws org.exolab.castor.xml.MarshalException * if object is null or if any SAXException is thrown during * marshaling * @throws org.exolab.castor.xml.ValidationException * if this object is an invalid instance according to the schema * @return the unmarshaled uk.ac.vamsas.objects.core.AnnotationElement */ public static uk.ac.vamsas.objects.core.AnnotationElement unmarshal( final java.io.Reader reader) throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException { return (uk.ac.vamsas.objects.core.AnnotationElement) Unmarshaller .unmarshal(uk.ac.vamsas.objects.core.AnnotationElement.class, reader); } /** * * * @throws org.exolab.castor.xml.ValidationException * if this object is an invalid instance according to the schema */ public void validate() throws org.exolab.castor.xml.ValidationException { org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml.Validator(); validator.validate(this); } }