/* * This file is part of the Vamsas Client version 0.2. * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, * Andrew Waterhouse and Dominik Lindner. * * Earlier versions have also been incorporated into Jalview version 2.4 * since 2008, and TOPALi version 2 since 2007. * * The Vamsas Client is free software: you can redistribute it and/or modify * it under the terms of the GNU Lesser General Public License as published by * the Free Software Foundation, either version 3 of the License, or * (at your option) any later version. * * The Vamsas Client is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU Lesser General Public License for more details. * * You should have received a copy of the GNU Lesser General Public License * along with the Vamsas Client. If not, see . */ package uk.ac.vamsas.objects.core; //---------------------------------/ //- Imported classes and packages -/ //---------------------------------/ import org.exolab.castor.xml.Marshaller; import org.exolab.castor.xml.Unmarshaller; /** * Class Attachment. * * @version $Revision$ $Date$ */ public class Attachment extends uk.ac.vamsas.objects.core.AppData implements java.io.Serializable { // --------------------------/ // - Class/Member Variables -/ // --------------------------/ /** * true implies data will be decompresses with Zip before presenting to * application */ private boolean _compressed = false; /** * keeps track of state for field: _compressed */ private boolean _has_compressed; /** * Type of arbitrary data - TODO: decide format - use (extended) MIME types ? */ private java.lang.String _type; /** * Object the arbitrary data is associated with * */ private java.lang.Object _objectref; /** * Primary Key for vamsas object referencing * */ private java.lang.String _id; // ----------------/ // - Constructors -/ // ----------------/ public Attachment() { super(); } // -----------/ // - Methods -/ // -----------/ /** */ public void deleteCompressed() { this._has_compressed = false; } /** * Overrides the java.lang.Object.equals method. * * @param obj * @return true if the objects are equal. */ public boolean equals(final java.lang.Object obj) { if (this == obj) return true; if (super.equals(obj) == false) return false; if (obj instanceof Attachment) { Attachment temp = (Attachment) obj; boolean thcycle; boolean tmcycle; if (this._compressed != temp._compressed) return false; if (this._has_compressed != temp._has_compressed) return false; if (this._type != null) { if (temp._type == null) return false; if (this._type != temp._type) { thcycle = org.castor.util.CycleBreaker.startingToCycle(this._type); tmcycle = org.castor.util.CycleBreaker.startingToCycle(temp._type); if (thcycle != tmcycle) { if (!thcycle) { org.castor.util.CycleBreaker.releaseCycleHandle(this._type); } ; if (!tmcycle) { org.castor.util.CycleBreaker.releaseCycleHandle(temp._type); } ; return false; } if (!thcycle) { if (!this._type.equals(temp._type)) { org.castor.util.CycleBreaker.releaseCycleHandle(this._type); org.castor.util.CycleBreaker.releaseCycleHandle(temp._type); return false; } org.castor.util.CycleBreaker.releaseCycleHandle(this._type); org.castor.util.CycleBreaker.releaseCycleHandle(temp._type); } } } else if (temp._type != null) return false; if (this._objectref != null) { if (temp._objectref == null) return false; if (this._objectref != temp._objectref) { thcycle = org.castor.util.CycleBreaker .startingToCycle(this._objectref); tmcycle = org.castor.util.CycleBreaker .startingToCycle(temp._objectref); if (thcycle != tmcycle) { if (!thcycle) { org.castor.util.CycleBreaker.releaseCycleHandle(this._objectref); } ; if (!tmcycle) { org.castor.util.CycleBreaker.releaseCycleHandle(temp._objectref); } ; return false; } if (!thcycle) { if (!this._objectref.equals(temp._objectref)) { org.castor.util.CycleBreaker.releaseCycleHandle(this._objectref); org.castor.util.CycleBreaker.releaseCycleHandle(temp._objectref); return false; } org.castor.util.CycleBreaker.releaseCycleHandle(this._objectref); org.castor.util.CycleBreaker.releaseCycleHandle(temp._objectref); } } } else if (temp._objectref != null) return false; if (this._id != null) { if (temp._id == null) return false; if (this._id != temp._id) { thcycle = org.castor.util.CycleBreaker.startingToCycle(this._id); tmcycle = org.castor.util.CycleBreaker.startingToCycle(temp._id); if (thcycle != tmcycle) { if (!thcycle) { org.castor.util.CycleBreaker.releaseCycleHandle(this._id); } ; if (!tmcycle) { org.castor.util.CycleBreaker.releaseCycleHandle(temp._id); } ; return false; } if (!thcycle) { if (!this._id.equals(temp._id)) { org.castor.util.CycleBreaker.releaseCycleHandle(this._id); org.castor.util.CycleBreaker.releaseCycleHandle(temp._id); return false; } org.castor.util.CycleBreaker.releaseCycleHandle(this._id); org.castor.util.CycleBreaker.releaseCycleHandle(temp._id); } } } else if (temp._id != null) return false; return true; } return false; } /** * Returns the value of field 'compressed'. The field 'compressed' has the * following description: true implies data will be decompresses with Zip * before presenting to application * * @return the value of field 'Compressed'. */ public boolean getCompressed() { return this._compressed; } /** * Returns the value of field 'id'. The field 'id' has the following * description: Primary Key for vamsas object referencing * * * @return the value of field 'Id'. */ public java.lang.String getId() { return this._id; } /** * Returns the value of field 'objectref'. The field 'objectref' has the * following description: Object the arbitrary data is associated with * * * @return the value of field 'Objectref'. */ public java.lang.Object getObjectref() { return this._objectref; } /** * Returns the value of field 'type'. The field 'type' has the following * description: Type of arbitrary data - TODO: decide format - use (extended) * MIME types ? * * @return the value of field 'Type'. */ public java.lang.String getType() { return this._type; } /** * Method hasCompressed. * * @return true if at least one Compressed has been added */ public boolean hasCompressed() { return this._has_compressed; } /** * Overrides the java.lang.Object.hashCode method. *

* The following steps came from Effective Java Programming Language * Guide by Joshua Bloch, Chapter 3 * * @return a hash code value for the object. */ public int hashCode() { int result = super.hashCode(); long tmp; result = 37 * result + (_compressed ? 0 : 1); if (_type != null && !org.castor.util.CycleBreaker.startingToCycle(_type)) { result = 37 * result + _type.hashCode(); org.castor.util.CycleBreaker.releaseCycleHandle(_type); } if (_objectref != null && !org.castor.util.CycleBreaker.startingToCycle(_objectref)) { result = 37 * result + _objectref.hashCode(); org.castor.util.CycleBreaker.releaseCycleHandle(_objectref); } if (_id != null && !org.castor.util.CycleBreaker.startingToCycle(_id)) { result = 37 * result + _id.hashCode(); org.castor.util.CycleBreaker.releaseCycleHandle(_id); } return result; } /** * Returns the value of field 'compressed'. The field 'compressed' has the * following description: true implies data will be decompresses with Zip * before presenting to application * * @return the value of field 'Compressed'. */ public boolean isCompressed() { return this._compressed; } /** * Method isValid. * * @return true if this object is valid according to the schema */ public boolean isValid() { try { validate(); } catch (org.exolab.castor.xml.ValidationException vex) { return false; } return true; } /** * * * @param out * @throws org.exolab.castor.xml.MarshalException * if object is null or if any SAXException is thrown during * marshaling * @throws org.exolab.castor.xml.ValidationException * if this object is an invalid instance according to the schema */ public void marshal(final java.io.Writer out) throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException { Marshaller.marshal(this, out); } /** * * * @param handler * @throws java.io.IOException * if an IOException occurs during marshaling * @throws org.exolab.castor.xml.ValidationException * if this object is an invalid instance according to the schema * @throws org.exolab.castor.xml.MarshalException * if object is null or if any SAXException is thrown during * marshaling */ public void marshal(final org.xml.sax.ContentHandler handler) throws java.io.IOException, org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException { Marshaller.marshal(this, handler); } /** * Sets the value of field 'compressed'. The field 'compressed' has the * following description: true implies data will be decompresses with Zip * before presenting to application * * @param compressed * the value of field 'compressed'. */ public void setCompressed(final boolean compressed) { this._compressed = compressed; this._has_compressed = true; } /** * Sets the value of field 'id'. The field 'id' has the following description: * Primary Key for vamsas object referencing * * * @param id * the value of field 'id'. */ public void setId(final java.lang.String id) { this._id = id; } /** * Sets the value of field 'objectref'. The field 'objectref' has the * following description: Object the arbitrary data is associated with * * * @param objectref * the value of field 'objectref'. */ public void setObjectref(final java.lang.Object objectref) { this._objectref = objectref; } /** * Sets the value of field 'type'. The field 'type' has the following * description: Type of arbitrary data - TODO: decide format - use (extended) * MIME types ? * * @param type * the value of field 'type'. */ public void setType(final java.lang.String type) { this._type = type; } /** * Method unmarshal. * * @param reader * @throws org.exolab.castor.xml.MarshalException * if object is null or if any SAXException is thrown during * marshaling * @throws org.exolab.castor.xml.ValidationException * if this object is an invalid instance according to the schema * @return the unmarshaled uk.ac.vamsas.objects.core.AppData */ public static uk.ac.vamsas.objects.core.AppData unmarshal( final java.io.Reader reader) throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException { return (uk.ac.vamsas.objects.core.AppData) Unmarshaller.unmarshal( uk.ac.vamsas.objects.core.Attachment.class, reader); } /** * * * @throws org.exolab.castor.xml.ValidationException * if this object is an invalid instance according to the schema */ public void validate() throws org.exolab.castor.xml.ValidationException { org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml.Validator(); validator.validate(this); } }