* Note: Just in case the collection contents are changing in another thread, * we pass a 0-length Array of the correct type into the API call. This way we * know that the Array returned is of exactly the correct length. * * @return this collection as an Array */ public java.lang.Object[] getSeqRef() { java.lang.Object[] array = new java.lang.Object[0]; return (java.lang.Object[]) this._seqRef.toArray(array); } /** * Method getSeqRefAsReference.Returns a reference to '_seqRef'. No type * checking is performed on any modifications to the Vector. * * @return a reference to the Vector backing this class */ public java.util.Vector getSeqRefAsReference() { return this._seqRef; } /** * Method getSeqRefCount. * * @return the size of this collection */ public int getSeqRefCount() { return this._seqRef.size(); } /** * Overrides the java.lang.Object.hashCode method. *
* The following steps came from Effective Java Programming Language * Guide by Joshua Bloch, Chapter 3 * * @return a hash code value for the object. */ public int hashCode() { int result = super.hashCode(); long tmp; if (_seqRef != null && !org.castor.util.CycleBreaker.startingToCycle(_seqRef)) { result = 37 * result + _seqRef.hashCode(); org.castor.util.CycleBreaker.releaseCycleHandle(_seqRef); } if (_provenance != null && !org.castor.util.CycleBreaker.startingToCycle(_provenance)) { result = 37 * result + _provenance.hashCode(); org.castor.util.CycleBreaker.releaseCycleHandle(_provenance); } return result; } /** * Method isValid. * * @return true if this object is valid according to the schema */ public boolean isValid() { try { validate(); } catch (org.exolab.castor.xml.ValidationException vex) { return false; } return true; } /** * * * @param out * @throws org.exolab.castor.xml.MarshalException * if object is null or if any SAXException is thrown during * marshaling * @throws org.exolab.castor.xml.ValidationException * if this object is an invalid instance according to the schema */ public void marshal(final java.io.Writer out) throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException { Marshaller.marshal(this, out); } /** * * * @param handler * @throws java.io.IOException * if an IOException occurs during marshaling * @throws org.exolab.castor.xml.ValidationException * if this object is an invalid instance according to the schema * @throws org.exolab.castor.xml.MarshalException * if object is null or if any SAXException is thrown during * marshaling */ public void marshal(final org.xml.sax.ContentHandler handler) throws java.io.IOException, org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException { Marshaller.marshal(this, handler); } /** */ public void removeAllSeqRef() { this._seqRef.clear(); } /** * Method removeSeqRef. * * @param vSeqRef * @return true if the object was removed from the collection. */ public boolean removeSeqRef(final java.lang.Object vSeqRef) { boolean removed = _seqRef.remove(vSeqRef); return removed; } /** * Method removeSeqRefAt. * * @param index * @return the element removed from the collection */ public java.lang.Object removeSeqRefAt(final int index) { java.lang.Object obj = this._seqRef.remove(index); return obj; } /** * Sets the value of field 'provenance'. * * @param provenance * the value of field 'provenance'. */ public void setProvenance( final uk.ac.vamsas.objects.core.Provenance provenance) { this._provenance = provenance; } /** * * * @param index * @param vSeqRef * @throws java.lang.IndexOutOfBoundsException * if the index given is outside the bounds of the collection */ public void setSeqRef(final int index, final java.lang.Object vSeqRef) throws java.lang.IndexOutOfBoundsException { // check bounds for index if (index < 0 || index >= this._seqRef.size()) { throw new IndexOutOfBoundsException("setSeqRef: Index value '" + index + "' not in range [0.." + (this._seqRef.size() - 1) + "]"); } this._seqRef.set(index, vSeqRef); } /** * * * @param vSeqRefArray */ public void setSeqRef(final java.lang.Object[] vSeqRefArray) { // -- copy array _seqRef.clear(); for (int i = 0; i < vSeqRefArray.length; i++) { this._seqRef.add(vSeqRefArray[i]); } } /** * Sets the value of '_seqRef' by copying the given Vector. All elements will * be checked for type safety. * * @param vSeqRefList * the Vector to copy. */ public void setSeqRef(final java.util.Vector vSeqRefList) { // copy vector this._seqRef.clear(); this._seqRef.addAll(vSeqRefList); } /** * Sets the value of '_seqRef' by setting it to the given Vector. No type * checking is performed. * * @deprecated * * @param seqRefVector * the Vector to set. */ public void setSeqRefAsReference(final java.util.Vector seqRefVector) { this._seqRef = seqRefVector; } /** * Method unmarshal. * * @param reader * @throws org.exolab.castor.xml.MarshalException * if object is null or if any SAXException is thrown during * marshaling * @throws org.exolab.castor.xml.ValidationException * if this object is an invalid instance according to the schema * @return the unmarshaled uk.ac.vamsas.objects.core.RangeType */ public static uk.ac.vamsas.objects.core.RangeType unmarshal( final java.io.Reader reader) throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException { return (uk.ac.vamsas.objects.core.RangeType) Unmarshaller.unmarshal( uk.ac.vamsas.objects.core.DataSetAnnotations.class, reader); } /** * * * @throws org.exolab.castor.xml.ValidationException * if this object is an invalid instance according to the schema */ public void validate() throws org.exolab.castor.xml.ValidationException { org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml.Validator(); validator.validate(this); } }