/* * This file is part of the Vamsas Client version 0.2. * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, * Andrew Waterhouse and Dominik Lindner. * * Earlier versions have also been incorporated into Jalview version 2.4 * since 2008, and TOPALi version 2 since 2007. * * The Vamsas Client is free software: you can redistribute it and/or modify * it under the terms of the GNU Lesser General Public License as published by * the Free Software Foundation, either version 3 of the License, or * (at your option) any later version. * * The Vamsas Client is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU Lesser General Public License for more details. * * You should have received a copy of the GNU Lesser General Public License * along with the Vamsas Client. If not, see . */ package uk.ac.vamsas.objects.core.descriptors; //---------------------------------/ //- Imported classes and packages -/ //---------------------------------/ import uk.ac.vamsas.objects.core.RangeAnnotation; /** * Class RangeAnnotationDescriptor. * * @version $Revision$ $Date$ */ public class RangeAnnotationDescriptor extends uk.ac.vamsas.objects.core.descriptors.RangeTypeDescriptor { // --------------------------/ // - Class/Member Variables -/ // --------------------------/ /** * Field _elementDefinition. */ private boolean _elementDefinition; /** * Field _nsPrefix. */ private java.lang.String _nsPrefix; /** * Field _nsURI. */ private java.lang.String _nsURI; /** * Field _xmlName. */ private java.lang.String _xmlName; // ----------------/ // - Constructors -/ // ----------------/ public RangeAnnotationDescriptor() { super(); setExtendsWithoutFlatten(new uk.ac.vamsas.objects.core.descriptors.RangeTypeDescriptor()); _nsURI = "http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"; _xmlName = "rangeAnnotation"; _elementDefinition = false; // -- set grouping compositor setCompositorAsSequence(); org.exolab.castor.xml.util.XMLFieldDescriptorImpl desc = null; org.exolab.castor.mapping.FieldHandler handler = null; org.exolab.castor.xml.FieldValidator fieldValidator = null; // -- initialize attribute descriptors // -- _id desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl( java.lang.String.class, "_id", "id", org.exolab.castor.xml.NodeType.Attribute); super.setIdentity(desc); handler = new org.exolab.castor.xml.XMLFieldHandler() { public java.lang.Object getValue(java.lang.Object object) throws IllegalStateException { RangeAnnotation target = (RangeAnnotation) object; return target.getId(); } public void setValue(java.lang.Object object, java.lang.Object value) throws IllegalStateException, IllegalArgumentException { try { RangeAnnotation target = (RangeAnnotation) object; target.setId((java.lang.String) value); } catch (java.lang.Exception ex) { throw new IllegalStateException(ex.toString()); } } public java.lang.Object newInstance(java.lang.Object parent) { return new java.lang.String(); } }; desc.setHandler(handler); desc.setMultivalued(false); addFieldDescriptor(desc); // -- validation code for: _id fieldValidator = new org.exolab.castor.xml.FieldValidator(); { // -- local scope org.exolab.castor.xml.validators.IdValidator typeValidator; typeValidator = new org.exolab.castor.xml.validators.IdValidator(); fieldValidator.setValidator(typeValidator); } desc.setValidator(fieldValidator); // -- _modifiable desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl( java.lang.String.class, "_modifiable", "modifiable", org.exolab.castor.xml.NodeType.Attribute); desc.setImmutable(true); handler = new org.exolab.castor.xml.XMLFieldHandler() { public java.lang.Object getValue(java.lang.Object object) throws IllegalStateException { RangeAnnotation target = (RangeAnnotation) object; return target.getModifiable(); } public void setValue(java.lang.Object object, java.lang.Object value) throws IllegalStateException, IllegalArgumentException { try { RangeAnnotation target = (RangeAnnotation) object; target.setModifiable((java.lang.String) value); } catch (java.lang.Exception ex) { throw new IllegalStateException(ex.toString()); } } public java.lang.Object newInstance(java.lang.Object parent) { return null; } }; desc.setHandler(handler); desc.setMultivalued(false); addFieldDescriptor(desc); // -- validation code for: _modifiable fieldValidator = new org.exolab.castor.xml.FieldValidator(); { // -- local scope org.exolab.castor.xml.validators.StringValidator typeValidator; typeValidator = new org.exolab.castor.xml.validators.StringValidator(); fieldValidator.setValidator(typeValidator); typeValidator.setWhiteSpace("preserve"); } desc.setValidator(fieldValidator); // -- _group desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl( java.lang.String.class, "_group", "group", org.exolab.castor.xml.NodeType.Attribute); desc.setImmutable(true); handler = new org.exolab.castor.xml.XMLFieldHandler() { public java.lang.Object getValue(java.lang.Object object) throws IllegalStateException { RangeAnnotation target = (RangeAnnotation) object; return target.getGroup(); } public void setValue(java.lang.Object object, java.lang.Object value) throws IllegalStateException, IllegalArgumentException { try { RangeAnnotation target = (RangeAnnotation) object; target.setGroup((java.lang.String) value); } catch (java.lang.Exception ex) { throw new IllegalStateException(ex.toString()); } } public java.lang.Object newInstance(java.lang.Object parent) { return null; } }; desc.setHandler(handler); desc.setMultivalued(false); addFieldDescriptor(desc); // -- validation code for: _group fieldValidator = new org.exolab.castor.xml.FieldValidator(); { // -- local scope org.exolab.castor.xml.validators.StringValidator typeValidator; typeValidator = new org.exolab.castor.xml.validators.StringValidator(); fieldValidator.setValidator(typeValidator); typeValidator.setWhiteSpace("preserve"); } desc.setValidator(fieldValidator); // -- _type desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl( java.lang.String.class, "_type", "type", org.exolab.castor.xml.NodeType.Attribute); desc.setImmutable(true); handler = new org.exolab.castor.xml.XMLFieldHandler() { public java.lang.Object getValue(java.lang.Object object) throws IllegalStateException { RangeAnnotation target = (RangeAnnotation) object; return target.getType(); } public void setValue(java.lang.Object object, java.lang.Object value) throws IllegalStateException, IllegalArgumentException { try { RangeAnnotation target = (RangeAnnotation) object; target.setType((java.lang.String) value); } catch (java.lang.Exception ex) { throw new IllegalStateException(ex.toString()); } } public java.lang.Object newInstance(java.lang.Object parent) { return null; } }; desc.setHandler(handler); desc.setRequired(true); desc.setMultivalued(false); addFieldDescriptor(desc); // -- validation code for: _type fieldValidator = new org.exolab.castor.xml.FieldValidator(); fieldValidator.setMinOccurs(1); { // -- local scope org.exolab.castor.xml.validators.StringValidator typeValidator; typeValidator = new org.exolab.castor.xml.validators.StringValidator(); fieldValidator.setValidator(typeValidator); typeValidator.setWhiteSpace("preserve"); } desc.setValidator(fieldValidator); // -- initialize element descriptors // -- _label desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl( java.lang.String.class, "_label", "label", org.exolab.castor.xml.NodeType.Element); desc.setImmutable(true); handler = new org.exolab.castor.xml.XMLFieldHandler() { public java.lang.Object getValue(java.lang.Object object) throws IllegalStateException { RangeAnnotation target = (RangeAnnotation) object; return target.getLabel(); } public void setValue(java.lang.Object object, java.lang.Object value) throws IllegalStateException, IllegalArgumentException { try { RangeAnnotation target = (RangeAnnotation) object; target.setLabel((java.lang.String) value); } catch (java.lang.Exception ex) { throw new IllegalStateException(ex.toString()); } } public java.lang.Object newInstance(java.lang.Object parent) { return null; } }; desc.setHandler(handler); desc.setNameSpaceURI("http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"); desc.setMultivalued(false); addFieldDescriptor(desc); // -- validation code for: _label fieldValidator = new org.exolab.castor.xml.FieldValidator(); { // -- local scope org.exolab.castor.xml.validators.StringValidator typeValidator; typeValidator = new org.exolab.castor.xml.validators.StringValidator(); fieldValidator.setValidator(typeValidator); typeValidator.setWhiteSpace("preserve"); } desc.setValidator(fieldValidator); // -- _description desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl( java.lang.String.class, "_description", "description", org.exolab.castor.xml.NodeType.Element); desc.setImmutable(true); handler = new org.exolab.castor.xml.XMLFieldHandler() { public java.lang.Object getValue(java.lang.Object object) throws IllegalStateException { RangeAnnotation target = (RangeAnnotation) object; return target.getDescription(); } public void setValue(java.lang.Object object, java.lang.Object value) throws IllegalStateException, IllegalArgumentException { try { RangeAnnotation target = (RangeAnnotation) object; target.setDescription((java.lang.String) value); } catch (java.lang.Exception ex) { throw new IllegalStateException(ex.toString()); } } public java.lang.Object newInstance(java.lang.Object parent) { return null; } }; desc.setHandler(handler); desc.setNameSpaceURI("http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"); desc.setMultivalued(false); addFieldDescriptor(desc); // -- validation code for: _description fieldValidator = new org.exolab.castor.xml.FieldValidator(); { // -- local scope org.exolab.castor.xml.validators.StringValidator typeValidator; typeValidator = new org.exolab.castor.xml.validators.StringValidator(); fieldValidator.setValidator(typeValidator); typeValidator.setWhiteSpace("preserve"); } desc.setValidator(fieldValidator); // -- _status desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl( java.lang.String.class, "_status", "status", org.exolab.castor.xml.NodeType.Element); desc.setImmutable(true); handler = new org.exolab.castor.xml.XMLFieldHandler() { public java.lang.Object getValue(java.lang.Object object) throws IllegalStateException { RangeAnnotation target = (RangeAnnotation) object; return target.getStatus(); } public void setValue(java.lang.Object object, java.lang.Object value) throws IllegalStateException, IllegalArgumentException { try { RangeAnnotation target = (RangeAnnotation) object; target.setStatus((java.lang.String) value); } catch (java.lang.Exception ex) { throw new IllegalStateException(ex.toString()); } } public java.lang.Object newInstance(java.lang.Object parent) { return null; } }; desc.setHandler(handler); desc.setNameSpaceURI("http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"); desc.setMultivalued(false); addFieldDescriptor(desc); // -- validation code for: _status fieldValidator = new org.exolab.castor.xml.FieldValidator(); { // -- local scope org.exolab.castor.xml.validators.StringValidator typeValidator; typeValidator = new org.exolab.castor.xml.validators.StringValidator(); fieldValidator.setValidator(typeValidator); typeValidator.setWhiteSpace("preserve"); } desc.setValidator(fieldValidator); // -- _annotationElementList desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl( uk.ac.vamsas.objects.core.AnnotationElement.class, "_annotationElementList", "annotationElement", org.exolab.castor.xml.NodeType.Element); handler = new org.exolab.castor.xml.XMLFieldHandler() { public java.lang.Object getValue(java.lang.Object object) throws IllegalStateException { RangeAnnotation target = (RangeAnnotation) object; return target.getAnnotationElement(); } public void setValue(java.lang.Object object, java.lang.Object value) throws IllegalStateException, IllegalArgumentException { try { RangeAnnotation target = (RangeAnnotation) object; target .addAnnotationElement((uk.ac.vamsas.objects.core.AnnotationElement) value); } catch (java.lang.Exception ex) { throw new IllegalStateException(ex.toString()); } } public void resetValue(Object object) throws IllegalStateException, IllegalArgumentException { try { RangeAnnotation target = (RangeAnnotation) object; target.removeAllAnnotationElement(); } catch (java.lang.Exception ex) { throw new IllegalStateException(ex.toString()); } } public java.lang.Object newInstance(java.lang.Object parent) { return new uk.ac.vamsas.objects.core.AnnotationElement(); } }; desc.setHandler(handler); desc.setNameSpaceURI("http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"); desc.setMultivalued(true); addFieldDescriptor(desc); // -- validation code for: _annotationElementList fieldValidator = new org.exolab.castor.xml.FieldValidator(); fieldValidator.setMinOccurs(0); { // -- local scope } desc.setValidator(fieldValidator); // -- _scoreList desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl( uk.ac.vamsas.objects.core.Score.class, "_scoreList", "score", org.exolab.castor.xml.NodeType.Element); handler = new org.exolab.castor.xml.XMLFieldHandler() { public java.lang.Object getValue(java.lang.Object object) throws IllegalStateException { RangeAnnotation target = (RangeAnnotation) object; return target.getScore(); } public void setValue(java.lang.Object object, java.lang.Object value) throws IllegalStateException, IllegalArgumentException { try { RangeAnnotation target = (RangeAnnotation) object; target.addScore((uk.ac.vamsas.objects.core.Score) value); } catch (java.lang.Exception ex) { throw new IllegalStateException(ex.toString()); } } public void resetValue(Object object) throws IllegalStateException, IllegalArgumentException { try { RangeAnnotation target = (RangeAnnotation) object; target.removeAllScore(); } catch (java.lang.Exception ex) { throw new IllegalStateException(ex.toString()); } } public java.lang.Object newInstance(java.lang.Object parent) { return new uk.ac.vamsas.objects.core.Score(); } }; desc.setHandler(handler); desc.setNameSpaceURI("http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"); desc.setMultivalued(true); addFieldDescriptor(desc); // -- validation code for: _scoreList fieldValidator = new org.exolab.castor.xml.FieldValidator(); fieldValidator.setMinOccurs(0); { // -- local scope } desc.setValidator(fieldValidator); // -- _linkList desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl( uk.ac.vamsas.objects.core.Link.class, "_linkList", "link", org.exolab.castor.xml.NodeType.Element); handler = new org.exolab.castor.xml.XMLFieldHandler() { public java.lang.Object getValue(java.lang.Object object) throws IllegalStateException { RangeAnnotation target = (RangeAnnotation) object; return target.getLink(); } public void setValue(java.lang.Object object, java.lang.Object value) throws IllegalStateException, IllegalArgumentException { try { RangeAnnotation target = (RangeAnnotation) object; target.addLink((uk.ac.vamsas.objects.core.Link) value); } catch (java.lang.Exception ex) { throw new IllegalStateException(ex.toString()); } } public void resetValue(Object object) throws IllegalStateException, IllegalArgumentException { try { RangeAnnotation target = (RangeAnnotation) object; target.removeAllLink(); } catch (java.lang.Exception ex) { throw new IllegalStateException(ex.toString()); } } public java.lang.Object newInstance(java.lang.Object parent) { return new uk.ac.vamsas.objects.core.Link(); } }; desc.setHandler(handler); desc.setNameSpaceURI("http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"); desc.setMultivalued(true); addFieldDescriptor(desc); // -- validation code for: _linkList fieldValidator = new org.exolab.castor.xml.FieldValidator(); fieldValidator.setMinOccurs(0); { // -- local scope } desc.setValidator(fieldValidator); // -- _propertyList desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl( uk.ac.vamsas.objects.core.Property.class, "_propertyList", "property", org.exolab.castor.xml.NodeType.Element); handler = new org.exolab.castor.xml.XMLFieldHandler() { public java.lang.Object getValue(java.lang.Object object) throws IllegalStateException { RangeAnnotation target = (RangeAnnotation) object; return target.getProperty(); } public void setValue(java.lang.Object object, java.lang.Object value) throws IllegalStateException, IllegalArgumentException { try { RangeAnnotation target = (RangeAnnotation) object; target.addProperty((uk.ac.vamsas.objects.core.Property) value); } catch (java.lang.Exception ex) { throw new IllegalStateException(ex.toString()); } } public void resetValue(Object object) throws IllegalStateException, IllegalArgumentException { try { RangeAnnotation target = (RangeAnnotation) object; target.removeAllProperty(); } catch (java.lang.Exception ex) { throw new IllegalStateException(ex.toString()); } } public java.lang.Object newInstance(java.lang.Object parent) { return new uk.ac.vamsas.objects.core.Property(); } }; desc.setHandler(handler); desc.setNameSpaceURI("http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"); desc.setMultivalued(true); addFieldDescriptor(desc); // -- validation code for: _propertyList fieldValidator = new org.exolab.castor.xml.FieldValidator(); fieldValidator.setMinOccurs(0); { // -- local scope } desc.setValidator(fieldValidator); } // -----------/ // - Methods -/ // -----------/ /** * Method getAccessMode. * * @return the access mode specified for this class. */ public org.exolab.castor.mapping.AccessMode getAccessMode() { return null; } /** * Method getIdentity. * * @return the identity field, null if this class has no identity. */ public org.exolab.castor.mapping.FieldDescriptor getIdentity() { return super.getIdentity(); } /** * Method getJavaClass. * * @return the Java class represented by this descriptor. */ public java.lang.Class getJavaClass() { return uk.ac.vamsas.objects.core.RangeAnnotation.class; } /** * Method getNameSpacePrefix. * * @return the namespace prefix to use when marshaling as XML. */ public java.lang.String getNameSpacePrefix() { return _nsPrefix; } /** * Method getNameSpaceURI. * * @return the namespace URI used when marshaling and unmarshaling as XML. */ public java.lang.String getNameSpaceURI() { return _nsURI; } /** * Method getValidator. * * @return a specific validator for the class described by this * ClassDescriptor. */ public org.exolab.castor.xml.TypeValidator getValidator() { return this; } /** * Method getXMLName. * * @return the XML Name for the Class being described. */ public java.lang.String getXMLName() { return _xmlName; } /** * Method isElementDefinition. * * @return true if XML schema definition of this Class is that of a global * element or element with anonymous type definition. */ public boolean isElementDefinition() { return _elementDefinition; } }