/* * This file is part of the Vamsas Client version 0.2. * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, * Andrew Waterhouse and Dominik Lindner. * * Earlier versions have also been incorporated into Jalview version 2.4 * since 2008, and TOPALi version 2 since 2007. * * The Vamsas Client is free software: you can redistribute it and/or modify * it under the terms of the GNU Lesser General Public License as published by * the Free Software Foundation, either version 3 of the License, or * (at your option) any later version. * * The Vamsas Client is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU Lesser General Public License for more details. * * You should have received a copy of the GNU Lesser General Public License * along with the Vamsas Client. If not, see . */ package uk.ac.vamsas.objects.utils; /** * dict attribute values for glyph symbol sets found in * uk.ac.vamsas.objects.core.AnnotationElement TODO: add validators and * multilength symbols. * * @author JimP * */ public class GlyphDictionary { /** * standard H, E, or C three state secondary structure assignment. */ static final public String PROTEIN_SS_3STATE = "aasecstr_3"; // HE, blank or C /** * default glyph type attribute indicates a UTF8 character */ static final public String DEFAULT = "utf8"; /** * kyte and doolittle hydrophobicity TODO: specify this glyph set. */ static final public String PROTEIN_HD_HYDRO = "kd_hydrophobicity"; }