/*\r
- * This class was automatically generated with \r
- * <a href="http://www.castor.org">Castor 1.1</a>, using an XML\r
- * Schema.\r
- * $Id$\r
+ * This file is part of the Vamsas Client version 0.1. \r
+ * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, \r
+ * Andrew Waterhouse and Dominik Lindner.\r
+ * \r
+ * Earlier versions have also been incorporated into Jalview version 2.4 \r
+ * since 2008, and TOPALi version 2 since 2007.\r
+ * \r
+ * The Vamsas Client is free software: you can redistribute it and/or modify\r
+ * it under the terms of the GNU Lesser General Public License as published by\r
+ * the Free Software Foundation, either version 3 of the License, or\r
+ * (at your option) any later version.\r
+ * \r
+ * The Vamsas Client is distributed in the hope that it will be useful,\r
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of\r
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the\r
+ * GNU Lesser General Public License for more details.\r
+ * \r
+ * You should have received a copy of the GNU Lesser General Public License\r
+ * along with the Vamsas Client. If not, see <http://www.gnu.org/licenses/>.\r
*/\r
-\r
package uk.ac.vamsas.objects.core;\r
\r
- //---------------------------------/\r
- //- Imported classes and packages -/\r
+//---------------------------------/\r
+//- Imported classes and packages -/\r
//---------------------------------/\r
\r
import org.exolab.castor.xml.Marshaller;\r
* \r
* @version $Revision$ $Date$\r
*/\r
-public class MapList extends uk.ac.vamsas.client.Vobject \r
-implements java.io.Serializable\r
-{\r
-\r
-\r
- //--------------------------/\r
- //- Class/Member Variables -/\r
- //--------------------------/\r
-\r
- /**\r
- * Offset to first position in dataset sequence record that\r
- * start\r
- * position on 'onto' maps to \r
- */\r
- private long _from = 0;\r
-\r
- /**\r
- * keeps track of state for field: _from\r
- */\r
- private boolean _has_from;\r
-\r
- /**\r
- * Offset to last position in dataset sequence record that end\r
- * position on 'onto' maps to \r
- */\r
- private long _to = 0;\r
-\r
- /**\r
- * keeps track of state for field: _to\r
- */\r
- private boolean _has_to;\r
-\r
- /**\r
- * Offset to first position in database entry that first (or\r
- * offset)\r
- * position in sequence maps to \r
- */\r
- private long _start;\r
-\r
- /**\r
- * keeps track of state for field: _start\r
- */\r
- private boolean _has_start;\r
-\r
- /**\r
- * Offset to last position in database entry that last (offset)\r
- * position in sequence maps to \r
- */\r
- private long _end;\r
-\r
- /**\r
- * keeps track of state for field: _end\r
- */\r
- private boolean _has_end;\r
-\r
-\r
- //----------------/\r
- //- Constructors -/\r
- //----------------/\r
-\r
- public MapList() {\r
- super();\r
- }\r
-\r
-\r
- //-----------/\r
- //- Methods -/\r
- //-----------/\r
-\r
- /**\r
+public class MapList extends uk.ac.vamsas.client.Vobject implements\r
+ java.io.Serializable {\r
+\r
+ // --------------------------/\r
+ // - Class/Member Variables -/\r
+ // --------------------------/\r
+\r
+ /**\r
+ * Offset to first position in dataset sequence record that start position on\r
+ * 'onto' maps to\r
+ */\r
+ private long _from = 0;\r
+\r
+ /**\r
+ * keeps track of state for field: _from\r
+ */\r
+ private boolean _has_from;\r
+\r
+ /**\r
+ * Offset to last position in dataset sequence record that end position on\r
+ * 'onto' maps to\r
+ */\r
+ private long _to = 0;\r
+\r
+ /**\r
+ * keeps track of state for field: _to\r
+ */\r
+ private boolean _has_to;\r
+\r
+ /**\r
+ * Offset to first position in database entry that first (or offset) position\r
+ * in sequence maps to\r
+ */\r
+ private long _start;\r
+\r
+ /**\r
+ * keeps track of state for field: _start\r
+ */\r
+ private boolean _has_start;\r
+\r
+ /**\r
+ * Offset to last position in database entry that last (offset) position in\r
+ * sequence maps to\r
+ */\r
+ private long _end;\r
+\r
+ /**\r
+ * keeps track of state for field: _end\r
+ */\r
+ private boolean _has_end;\r
+\r
+ // ----------------/\r
+ // - Constructors -/\r
+ // ----------------/\r
+\r
+ public MapList() {\r
+ super();\r
+ }\r
+\r
+ // -----------/\r
+ // - Methods -/\r
+ // -----------/\r
+\r
+ /**\r
*/\r
- public void deleteEnd(\r
- ) {\r
- this._has_end= false;\r
- }\r
-\r
- /**\r
- */\r
- public void deleteFrom(\r
- ) {\r
- this._has_from= false;\r
- }\r
+ public void deleteEnd() {\r
+ this._has_end = false;\r
+ }\r
\r
- /**\r
+ /**\r
*/\r
- public void deleteStart(\r
- ) {\r
- this._has_start= false;\r
- }\r
+ public void deleteFrom() {\r
+ this._has_from = false;\r
+ }\r
\r
- /**\r
+ /**\r
*/\r
- public void deleteTo(\r
- ) {\r
- this._has_to= false;\r
- }\r
+ public void deleteStart() {\r
+ this._has_start = false;\r
+ }\r
\r
- /**\r
- * Overrides the java.lang.Object.equals method.\r
- * \r
- * @param obj\r
- * @return true if the objects are equal.\r
+ /**\r
*/\r
- public boolean equals(\r
- final java.lang.Object obj) {\r
- if ( this == obj )\r
- return true;\r
- \r
- if (super.equals(obj)==false)\r
- return false;\r
- \r
- if (obj instanceof MapList) {\r
- \r
- MapList temp = (MapList)obj;\r
- if (this._from != temp._from)\r
- return false;\r
- if (this._has_from != temp._has_from)\r
- return false;\r
- if (this._to != temp._to)\r
- return false;\r
- if (this._has_to != temp._has_to)\r
- return false;\r
- if (this._start != temp._start)\r
- return false;\r
- if (this._has_start != temp._has_start)\r
- return false;\r
- if (this._end != temp._end)\r
- return false;\r
- if (this._has_end != temp._has_end)\r
- return false;\r
- return true;\r
- }\r
+ public void deleteTo() {\r
+ this._has_to = false;\r
+ }\r
+\r
+ /**\r
+ * Overrides the java.lang.Object.equals method.\r
+ * \r
+ * @param obj\r
+ * @return true if the objects are equal.\r
+ */\r
+ public boolean equals(final java.lang.Object obj) {\r
+ if (this == obj)\r
+ return true;\r
+\r
+ if (super.equals(obj) == false)\r
+ return false;\r
+\r
+ if (obj instanceof MapList) {\r
+\r
+ MapList temp = (MapList) obj;\r
+ if (this._from != temp._from)\r
return false;\r
+ if (this._has_from != temp._has_from)\r
+ return false;\r
+ if (this._to != temp._to)\r
+ return false;\r
+ if (this._has_to != temp._has_to)\r
+ return false;\r
+ if (this._start != temp._start)\r
+ return false;\r
+ if (this._has_start != temp._has_start)\r
+ return false;\r
+ if (this._end != temp._end)\r
+ return false;\r
+ if (this._has_end != temp._has_end)\r
+ return false;\r
+ return true;\r
}\r
-\r
- /**\r
- * Returns the value of field 'end'. The field 'end' has the\r
- * following description: Offset to last position in database\r
- * entry that last (offset)\r
- * position in sequence maps to \r
- * \r
- * @return the value of field 'End'.\r
- */\r
- public long getEnd(\r
- ) {\r
- return this._end;\r
- }\r
-\r
- /**\r
- * Returns the value of field 'from'. The field 'from' has the\r
- * following description: Offset to first position in dataset\r
- * sequence record that start\r
- * position on 'onto' maps to \r
- * \r
- * @return the value of field 'From'.\r
- */\r
- public long getFrom(\r
- ) {\r
- return this._from;\r
- }\r
-\r
- /**\r
- * Returns the value of field 'start'. The field 'start' has\r
- * the following description: Offset to first position in\r
- * database entry that first (or offset)\r
- * position in sequence maps to \r
- * \r
- * @return the value of field 'Start'.\r
- */\r
- public long getStart(\r
- ) {\r
- return this._start;\r
- }\r
-\r
- /**\r
- * Returns the value of field 'to'. The field 'to' has the\r
- * following description: Offset to last position in dataset\r
- * sequence record that end\r
- * position on 'onto' maps to \r
- * \r
- * @return the value of field 'To'.\r
- */\r
- public long getTo(\r
- ) {\r
- return this._to;\r
- }\r
-\r
- /**\r
- * Method hasEnd.\r
- * \r
- * @return true if at least one End has been added\r
- */\r
- public boolean hasEnd(\r
- ) {\r
- return this._has_end;\r
- }\r
-\r
- /**\r
- * Method hasFrom.\r
- * \r
- * @return true if at least one From has been added\r
- */\r
- public boolean hasFrom(\r
- ) {\r
- return this._has_from;\r
- }\r
-\r
- /**\r
- * Method hasStart.\r
- * \r
- * @return true if at least one Start has been added\r
- */\r
- public boolean hasStart(\r
- ) {\r
- return this._has_start;\r
- }\r
-\r
- /**\r
- * Method hasTo.\r
- * \r
- * @return true if at least one To has been added\r
- */\r
- public boolean hasTo(\r
- ) {\r
- return this._has_to;\r
- }\r
-\r
- /**\r
- * Overrides the java.lang.Object.hashCode method.\r
- * <p>\r
- * The following steps came from <b>Effective Java Programming\r
- * Language Guide</b> by Joshua Bloch, Chapter 3\r
- * \r
- * @return a hash code value for the object.\r
- */\r
- public int hashCode(\r
- ) {\r
- int result = super.hashCode();\r
- \r
- long tmp;\r
- result = 37 * result + (int)(_from^(_from>>>32));\r
- result = 37 * result + (int)(_to^(_to>>>32));\r
- result = 37 * result + (int)(_start^(_start>>>32));\r
- result = 37 * result + (int)(_end^(_end>>>32));\r
- \r
- return result;\r
- }\r
-\r
- /**\r
- * Method isValid.\r
- * \r
- * @return true if this object is valid according to the schema\r
- */\r
- public boolean isValid(\r
- ) {\r
- try {\r
- validate();\r
- } catch (org.exolab.castor.xml.ValidationException vex) {\r
- return false;\r
- }\r
- return true;\r
- }\r
-\r
- /**\r
- * \r
- * \r
- * @param out\r
- * @throws org.exolab.castor.xml.MarshalException if object is\r
- * null or if any SAXException is thrown during marshaling\r
- * @throws org.exolab.castor.xml.ValidationException if this\r
- * object is an invalid instance according to the schema\r
- */\r
- public void marshal(\r
- final java.io.Writer out)\r
- throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException {\r
- Marshaller.marshal(this, out);\r
- }\r
-\r
- /**\r
- * \r
- * \r
- * @param handler\r
- * @throws java.io.IOException if an IOException occurs during\r
- * marshaling\r
- * @throws org.exolab.castor.xml.ValidationException if this\r
- * object is an invalid instance according to the schema\r
- * @throws org.exolab.castor.xml.MarshalException if object is\r
- * null or if any SAXException is thrown during marshaling\r
- */\r
- public void marshal(\r
- final org.xml.sax.ContentHandler handler)\r
- throws java.io.IOException, org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException {\r
- Marshaller.marshal(this, handler);\r
- }\r
-\r
- /**\r
- * Sets the value of field 'end'. The field 'end' has the\r
- * following description: Offset to last position in database\r
- * entry that last (offset)\r
- * position in sequence maps to \r
- * \r
- * @param end the value of field 'end'.\r
- */\r
- public void setEnd(\r
- final long end) {\r
- this._end = end;\r
- this._has_end = true;\r
- }\r
-\r
- /**\r
- * Sets the value of field 'from'. The field 'from' has the\r
- * following description: Offset to first position in dataset\r
- * sequence record that start\r
- * position on 'onto' maps to \r
- * \r
- * @param from the value of field 'from'.\r
- */\r
- public void setFrom(\r
- final long from) {\r
- this._from = from;\r
- this._has_from = true;\r
- }\r
-\r
- /**\r
- * Sets the value of field 'start'. The field 'start' has the\r
- * following description: Offset to first position in database\r
- * entry that first (or offset)\r
- * position in sequence maps to \r
- * \r
- * @param start the value of field 'start'.\r
- */\r
- public void setStart(\r
- final long start) {\r
- this._start = start;\r
- this._has_start = true;\r
- }\r
-\r
- /**\r
- * Sets the value of field 'to'. The field 'to' has the\r
- * following description: Offset to last position in dataset\r
- * sequence record that end\r
- * position on 'onto' maps to \r
- * \r
- * @param to the value of field 'to'.\r
- */\r
- public void setTo(\r
- final long to) {\r
- this._to = to;\r
- this._has_to = true;\r
- }\r
-\r
- /**\r
- * Method unmarshal.\r
- * \r
- * @param reader\r
- * @throws org.exolab.castor.xml.MarshalException if object is\r
- * null or if any SAXException is thrown during marshaling\r
- * @throws org.exolab.castor.xml.ValidationException if this\r
- * object is an invalid instance according to the schema\r
- * @return the unmarshaled uk.ac.vamsas.objects.core.MapList\r
- */\r
- public static uk.ac.vamsas.objects.core.MapList unmarshal(\r
- final java.io.Reader reader)\r
- throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException {\r
- return (uk.ac.vamsas.objects.core.MapList) Unmarshaller.unmarshal(uk.ac.vamsas.objects.core.MapList.class, reader);\r
- }\r
-\r
- /**\r
- * \r
- * \r
- * @throws org.exolab.castor.xml.ValidationException if this\r
- * object is an invalid instance according to the schema\r
- */\r
- public void validate(\r
- )\r
- throws org.exolab.castor.xml.ValidationException {\r
- org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml.Validator();\r
- validator.validate(this);\r
+ return false;\r
+ }\r
+\r
+ /**\r
+ * Returns the value of field 'end'. The field 'end' has the following\r
+ * description: Offset to last position in database entry that last (offset)\r
+ * position in sequence maps to\r
+ * \r
+ * @return the value of field 'End'.\r
+ */\r
+ public long getEnd() {\r
+ return this._end;\r
+ }\r
+\r
+ /**\r
+ * Returns the value of field 'from'. The field 'from' has the following\r
+ * description: Offset to first position in dataset sequence record that start\r
+ * position on 'onto' maps to\r
+ * \r
+ * @return the value of field 'From'.\r
+ */\r
+ public long getFrom() {\r
+ return this._from;\r
+ }\r
+\r
+ /**\r
+ * Returns the value of field 'start'. The field 'start' has the following\r
+ * description: Offset to first position in database entry that first (or\r
+ * offset) position in sequence maps to\r
+ * \r
+ * @return the value of field 'Start'.\r
+ */\r
+ public long getStart() {\r
+ return this._start;\r
+ }\r
+\r
+ /**\r
+ * Returns the value of field 'to'. The field 'to' has the following\r
+ * description: Offset to last position in dataset sequence record that end\r
+ * position on 'onto' maps to\r
+ * \r
+ * @return the value of field 'To'.\r
+ */\r
+ public long getTo() {\r
+ return this._to;\r
+ }\r
+\r
+ /**\r
+ * Method hasEnd.\r
+ * \r
+ * @return true if at least one End has been added\r
+ */\r
+ public boolean hasEnd() {\r
+ return this._has_end;\r
+ }\r
+\r
+ /**\r
+ * Method hasFrom.\r
+ * \r
+ * @return true if at least one From has been added\r
+ */\r
+ public boolean hasFrom() {\r
+ return this._has_from;\r
+ }\r
+\r
+ /**\r
+ * Method hasStart.\r
+ * \r
+ * @return true if at least one Start has been added\r
+ */\r
+ public boolean hasStart() {\r
+ return this._has_start;\r
+ }\r
+\r
+ /**\r
+ * Method hasTo.\r
+ * \r
+ * @return true if at least one To has been added\r
+ */\r
+ public boolean hasTo() {\r
+ return this._has_to;\r
+ }\r
+\r
+ /**\r
+ * Overrides the java.lang.Object.hashCode method.\r
+ * <p>\r
+ * The following steps came from <b>Effective Java Programming Language\r
+ * Guide</b> by Joshua Bloch, Chapter 3\r
+ * \r
+ * @return a hash code value for the object.\r
+ */\r
+ public int hashCode() {\r
+ int result = super.hashCode();\r
+\r
+ long tmp;\r
+ result = 37 * result + (int) (_from ^ (_from >>> 32));\r
+ result = 37 * result + (int) (_to ^ (_to >>> 32));\r
+ result = 37 * result + (int) (_start ^ (_start >>> 32));\r
+ result = 37 * result + (int) (_end ^ (_end >>> 32));\r
+\r
+ return result;\r
+ }\r
+\r
+ /**\r
+ * Method isValid.\r
+ * \r
+ * @return true if this object is valid according to the schema\r
+ */\r
+ public boolean isValid() {\r
+ try {\r
+ validate();\r
+ } catch (org.exolab.castor.xml.ValidationException vex) {\r
+ return false;\r
}\r
+ return true;\r
+ }\r
+\r
+ /**\r
+ * \r
+ * \r
+ * @param out\r
+ * @throws org.exolab.castor.xml.MarshalException\r
+ * if object is null or if any SAXException is thrown during\r
+ * marshaling\r
+ * @throws org.exolab.castor.xml.ValidationException\r
+ * if this object is an invalid instance according to the schema\r
+ */\r
+ public void marshal(final java.io.Writer out)\r
+ throws org.exolab.castor.xml.MarshalException,\r
+ org.exolab.castor.xml.ValidationException {\r
+ Marshaller.marshal(this, out);\r
+ }\r
+\r
+ /**\r
+ * \r
+ * \r
+ * @param handler\r
+ * @throws java.io.IOException\r
+ * if an IOException occurs during marshaling\r
+ * @throws org.exolab.castor.xml.ValidationException\r
+ * if this object is an invalid instance according to the schema\r
+ * @throws org.exolab.castor.xml.MarshalException\r
+ * if object is null or if any SAXException is thrown during\r
+ * marshaling\r
+ */\r
+ public void marshal(final org.xml.sax.ContentHandler handler)\r
+ throws java.io.IOException, org.exolab.castor.xml.MarshalException,\r
+ org.exolab.castor.xml.ValidationException {\r
+ Marshaller.marshal(this, handler);\r
+ }\r
+\r
+ /**\r
+ * Sets the value of field 'end'. The field 'end' has the following\r
+ * description: Offset to last position in database entry that last (offset)\r
+ * position in sequence maps to\r
+ * \r
+ * @param end\r
+ * the value of field 'end'.\r
+ */\r
+ public void setEnd(final long end) {\r
+ this._end = end;\r
+ this._has_end = true;\r
+ }\r
+\r
+ /**\r
+ * Sets the value of field 'from'. The field 'from' has the following\r
+ * description: Offset to first position in dataset sequence record that start\r
+ * position on 'onto' maps to\r
+ * \r
+ * @param from\r
+ * the value of field 'from'.\r
+ */\r
+ public void setFrom(final long from) {\r
+ this._from = from;\r
+ this._has_from = true;\r
+ }\r
+\r
+ /**\r
+ * Sets the value of field 'start'. The field 'start' has the following\r
+ * description: Offset to first position in database entry that first (or\r
+ * offset) position in sequence maps to\r
+ * \r
+ * @param start\r
+ * the value of field 'start'.\r
+ */\r
+ public void setStart(final long start) {\r
+ this._start = start;\r
+ this._has_start = true;\r
+ }\r
+\r
+ /**\r
+ * Sets the value of field 'to'. The field 'to' has the following description:\r
+ * Offset to last position in dataset sequence record that end position on\r
+ * 'onto' maps to\r
+ * \r
+ * @param to\r
+ * the value of field 'to'.\r
+ */\r
+ public void setTo(final long to) {\r
+ this._to = to;\r
+ this._has_to = true;\r
+ }\r
+\r
+ /**\r
+ * Method unmarshal.\r
+ * \r
+ * @param reader\r
+ * @throws org.exolab.castor.xml.MarshalException\r
+ * if object is null or if any SAXException is thrown during\r
+ * marshaling\r
+ * @throws org.exolab.castor.xml.ValidationException\r
+ * if this object is an invalid instance according to the schema\r
+ * @return the unmarshaled uk.ac.vamsas.objects.core.MapList\r
+ */\r
+ public static uk.ac.vamsas.objects.core.MapList unmarshal(\r
+ final java.io.Reader reader)\r
+ throws org.exolab.castor.xml.MarshalException,\r
+ org.exolab.castor.xml.ValidationException {\r
+ return (uk.ac.vamsas.objects.core.MapList) Unmarshaller.unmarshal(\r
+ uk.ac.vamsas.objects.core.MapList.class, reader);\r
+ }\r
+\r
+ /**\r
+ * \r
+ * \r
+ * @throws org.exolab.castor.xml.ValidationException\r
+ * if this object is an invalid instance according to the schema\r
+ */\r
+ public void validate() throws org.exolab.castor.xml.ValidationException {\r
+ org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml.Validator();\r
+ validator.validate(this);\r
+ }\r
\r
}\r
git://source.jalview.org / vamsas.git / blobdiff