/*\r
- * This class was automatically generated with \r
- * <a href="http://www.castor.org">Castor 1.1</a>, using an XML\r
- * Schema.\r
- * $Id$\r
+ * This file is part of the Vamsas Client version 0.1. \r
+ * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, \r
+ * Andrew Waterhouse and Dominik Lindner.\r
+ * \r
+ * Earlier versions have also been incorporated into Jalview version 2.4 \r
+ * since 2008, and TOPALi version 2 since 2007.\r
+ * \r
+ * The Vamsas Client is free software: you can redistribute it and/or modify\r
+ * it under the terms of the GNU Lesser General Public License as published by\r
+ * the Free Software Foundation, either version 3 of the License, or\r
+ * (at your option) any later version.\r
+ * \r
+ * The Vamsas Client is distributed in the hope that it will be useful,\r
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of\r
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the\r
+ * GNU Lesser General Public License for more details.\r
+ * \r
+ * You should have received a copy of the GNU Lesser General Public License\r
+ * along with the Vamsas Client. If not, see <http://www.gnu.org/licenses/>.\r
*/\r
-\r
package uk.ac.vamsas.objects.core;\r
\r
- //---------------------------------/\r
- //- Imported classes and packages -/\r
+//---------------------------------/\r
+//- Imported classes and packages -/\r
//---------------------------------/\r
\r
import org.exolab.castor.xml.Marshaller;\r
* \r
* @version $Revision$ $Date$\r
*/\r
-public class NodeType extends uk.ac.vamsas.client.Vobject \r
-implements java.io.Serializable\r
-{\r
-\r
-\r
- //--------------------------/\r
- //- Class/Member Variables -/\r
- //--------------------------/\r
-\r
- /**\r
- * Primary Key for vamsas object referencing \r
- */\r
- private java.lang.String _id;\r
-\r
- /**\r
- * Field _modifiable.\r
- */\r
- private java.lang.String _modifiable;\r
-\r
- /**\r
- * Short name for this node\r
- */\r
- private java.lang.String _name;\r
-\r
- /**\r
- * Descriptive text for this node\r
- */\r
- private java.lang.String _description;\r
-\r
- /**\r
- * Direct associations between this node and any vamsas\r
- * objects\r
- */\r
- private java.util.Vector _vrefList;\r
-\r
- /**\r
- * Field _propertyList.\r
- */\r
- private java.util.Vector _propertyList;\r
-\r
-\r
- //----------------/\r
- //- Constructors -/\r
- //----------------/\r
-\r
- public NodeType() {\r
- super();\r
- this._vrefList = new java.util.Vector();\r
- this._propertyList = new java.util.Vector();\r
- }\r
-\r
-\r
- //-----------/\r
- //- Methods -/\r
- //-----------/\r
-\r
- /**\r
- * \r
- * \r
- * @param vProperty\r
- * @throws java.lang.IndexOutOfBoundsException if the index\r
- * given is outside the bounds of the collection\r
- */\r
- public void addProperty(\r
- final uk.ac.vamsas.objects.core.Property vProperty)\r
- throws java.lang.IndexOutOfBoundsException {\r
- this._propertyList.addElement(vProperty);\r
- }\r
-\r
- /**\r
- * \r
- * \r
- * @param index\r
- * @param vProperty\r
- * @throws java.lang.IndexOutOfBoundsException if the index\r
- * given is outside the bounds of the collection\r
- */\r
- public void addProperty(\r
- final int index,\r
- final uk.ac.vamsas.objects.core.Property vProperty)\r
- throws java.lang.IndexOutOfBoundsException {\r
- this._propertyList.add(index, vProperty);\r
- }\r
-\r
- /**\r
- * \r
- * \r
- * @param vVref\r
- * @throws java.lang.IndexOutOfBoundsException if the index\r
- * given is outside the bounds of the collection\r
- */\r
- public void addVref(\r
- final uk.ac.vamsas.objects.core.Vref vVref)\r
- throws java.lang.IndexOutOfBoundsException {\r
- this._vrefList.addElement(vVref);\r
- }\r
-\r
- /**\r
- * \r
- * \r
- * @param index\r
- * @param vVref\r
- * @throws java.lang.IndexOutOfBoundsException if the index\r
- * given is outside the bounds of the collection\r
- */\r
- public void addVref(\r
- final int index,\r
- final uk.ac.vamsas.objects.core.Vref vVref)\r
- throws java.lang.IndexOutOfBoundsException {\r
- this._vrefList.add(index, vVref);\r
- }\r
-\r
- /**\r
- * Method enumerateProperty.\r
- * \r
- * @return an Enumeration over all\r
- * uk.ac.vamsas.objects.core.Property elements\r
- */\r
- public java.util.Enumeration enumerateProperty(\r
- ) {\r
- return this._propertyList.elements();\r
- }\r
-\r
- /**\r
- * Method enumerateVref.\r
- * \r
- * @return an Enumeration over all\r
- * uk.ac.vamsas.objects.core.Vref elements\r
- */\r
- public java.util.Enumeration enumerateVref(\r
- ) {\r
- return this._vrefList.elements();\r
- }\r
-\r
- /**\r
- * Overrides the java.lang.Object.equals method.\r
- * \r
- * @param obj\r
- * @return true if the objects are equal.\r
- */\r
- public boolean equals(\r
- final java.lang.Object obj) {\r
- if ( this == obj )\r
- return true;\r
- \r
- if (super.equals(obj)==false)\r
+public class NodeType extends uk.ac.vamsas.client.Vobject implements\r
+ java.io.Serializable {\r
+\r
+ // --------------------------/\r
+ // - Class/Member Variables -/\r
+ // --------------------------/\r
+\r
+ /**\r
+ * Primary Key for vamsas object referencing\r
+ */\r
+ private java.lang.String _id;\r
+\r
+ /**\r
+ * Field _modifiable.\r
+ */\r
+ private java.lang.String _modifiable;\r
+\r
+ /**\r
+ * Short name for this node\r
+ */\r
+ private java.lang.String _name;\r
+\r
+ /**\r
+ * Descriptive text for this node\r
+ */\r
+ private java.lang.String _description;\r
+\r
+ /**\r
+ * Direct associations between this node and any vamsas objects\r
+ */\r
+ private java.util.Vector _vrefList;\r
+\r
+ /**\r
+ * Field _propertyList.\r
+ */\r
+ private java.util.Vector _propertyList;\r
+\r
+ // ----------------/\r
+ // - Constructors -/\r
+ // ----------------/\r
+\r
+ public NodeType() {\r
+ super();\r
+ this._vrefList = new java.util.Vector();\r
+ this._propertyList = new java.util.Vector();\r
+ }\r
+\r
+ // -----------/\r
+ // - Methods -/\r
+ // -----------/\r
+\r
+ /**\r
+ * \r
+ * \r
+ * @param vProperty\r
+ * @throws java.lang.IndexOutOfBoundsException\r
+ * if the index given is outside the bounds of the collection\r
+ */\r
+ public void addProperty(final uk.ac.vamsas.objects.core.Property vProperty)\r
+ throws java.lang.IndexOutOfBoundsException {\r
+ this._propertyList.addElement(vProperty);\r
+ }\r
+\r
+ /**\r
+ * \r
+ * \r
+ * @param index\r
+ * @param vProperty\r
+ * @throws java.lang.IndexOutOfBoundsException\r
+ * if the index given is outside the bounds of the collection\r
+ */\r
+ public void addProperty(final int index,\r
+ final uk.ac.vamsas.objects.core.Property vProperty)\r
+ throws java.lang.IndexOutOfBoundsException {\r
+ this._propertyList.add(index, vProperty);\r
+ }\r
+\r
+ /**\r
+ * \r
+ * \r
+ * @param vVref\r
+ * @throws java.lang.IndexOutOfBoundsException\r
+ * if the index given is outside the bounds of the collection\r
+ */\r
+ public void addVref(final uk.ac.vamsas.objects.core.Vref vVref)\r
+ throws java.lang.IndexOutOfBoundsException {\r
+ this._vrefList.addElement(vVref);\r
+ }\r
+\r
+ /**\r
+ * \r
+ * \r
+ * @param index\r
+ * @param vVref\r
+ * @throws java.lang.IndexOutOfBoundsException\r
+ * if the index given is outside the bounds of the collection\r
+ */\r
+ public void addVref(final int index,\r
+ final uk.ac.vamsas.objects.core.Vref vVref)\r
+ throws java.lang.IndexOutOfBoundsException {\r
+ this._vrefList.add(index, vVref);\r
+ }\r
+\r
+ /**\r
+ * Method enumerateProperty.\r
+ * \r
+ * @return an Enumeration over all uk.ac.vamsas.objects.core.Property elements\r
+ */\r
+ public java.util.Enumeration enumerateProperty() {\r
+ return this._propertyList.elements();\r
+ }\r
+\r
+ /**\r
+ * Method enumerateVref.\r
+ * \r
+ * @return an Enumeration over all uk.ac.vamsas.objects.core.Vref elements\r
+ */\r
+ public java.util.Enumeration enumerateVref() {\r
+ return this._vrefList.elements();\r
+ }\r
+\r
+ /**\r
+ * Overrides the java.lang.Object.equals method.\r
+ * \r
+ * @param obj\r
+ * @return true if the objects are equal.\r
+ */\r
+ public boolean equals(final java.lang.Object obj) {\r
+ if (this == obj)\r
+ return true;\r
+\r
+ if (super.equals(obj) == false)\r
+ return false;\r
+\r
+ if (obj instanceof NodeType) {\r
+\r
+ NodeType temp = (NodeType) obj;\r
+ boolean thcycle;\r
+ boolean tmcycle;\r
+ if (this._id != null) {\r
+ if (temp._id == null)\r
+ return false;\r
+ if (this._id != temp._id) {\r
+ thcycle = org.castor.util.CycleBreaker.startingToCycle(this._id);\r
+ tmcycle = org.castor.util.CycleBreaker.startingToCycle(temp._id);\r
+ if (thcycle != tmcycle) {\r
+ if (!thcycle) {\r
+ org.castor.util.CycleBreaker.releaseCycleHandle(this._id);\r
+ }\r
+ ;\r
+ if (!tmcycle) {\r
+ org.castor.util.CycleBreaker.releaseCycleHandle(temp._id);\r
+ }\r
+ ;\r
return false;\r
- \r
- if (obj instanceof NodeType) {\r
- \r
- NodeType temp = (NodeType)obj;\r
- boolean thcycle;\r
- boolean tmcycle;\r
- if (this._id != null) {\r
- if (temp._id == null) return false;\r
- if (this._id != temp._id) {\r
- thcycle=org.castor.util.CycleBreaker.startingToCycle(this._id);\r
- tmcycle=org.castor.util.CycleBreaker.startingToCycle(temp._id);\r
- if (thcycle!=tmcycle) {\r
- if (!thcycle) { org.castor.util.CycleBreaker.releaseCycleHandle(this._id); };\r
- if (!tmcycle) { org.castor.util.CycleBreaker.releaseCycleHandle(temp._id); };\r
- return false;\r
- }\r
- if (!thcycle) {\r
- if (!this._id.equals(temp._id)) {\r
- org.castor.util.CycleBreaker.releaseCycleHandle(this._id);\r
- org.castor.util.CycleBreaker.releaseCycleHandle(temp._id);\r
- return false;\r
- }\r
- org.castor.util.CycleBreaker.releaseCycleHandle(this._id);\r
- org.castor.util.CycleBreaker.releaseCycleHandle(temp._id);\r
- }\r
- }\r
- } else if (temp._id != null)\r
- return false;\r
- if (this._modifiable != null) {\r
- if (temp._modifiable == null) return false;\r
- if (this._modifiable != temp._modifiable) {\r
- thcycle=org.castor.util.CycleBreaker.startingToCycle(this._modifiable);\r
- tmcycle=org.castor.util.CycleBreaker.startingToCycle(temp._modifiable);\r
- if (thcycle!=tmcycle) {\r
- if (!thcycle) { org.castor.util.CycleBreaker.releaseCycleHandle(this._modifiable); };\r
- if (!tmcycle) { org.castor.util.CycleBreaker.releaseCycleHandle(temp._modifiable); };\r
- return false;\r
- }\r
- if (!thcycle) {\r
- if (!this._modifiable.equals(temp._modifiable)) {\r
- org.castor.util.CycleBreaker.releaseCycleHandle(this._modifiable);\r
- org.castor.util.CycleBreaker.releaseCycleHandle(temp._modifiable);\r
- return false;\r
- }\r
- org.castor.util.CycleBreaker.releaseCycleHandle(this._modifiable);\r
- org.castor.util.CycleBreaker.releaseCycleHandle(temp._modifiable);\r
- }\r
- }\r
- } else if (temp._modifiable != null)\r
- return false;\r
- if (this._name != null) {\r
- if (temp._name == null) return false;\r
- if (this._name != temp._name) {\r
- thcycle=org.castor.util.CycleBreaker.startingToCycle(this._name);\r
- tmcycle=org.castor.util.CycleBreaker.startingToCycle(temp._name);\r
- if (thcycle!=tmcycle) {\r
- if (!thcycle) { org.castor.util.CycleBreaker.releaseCycleHandle(this._name); };\r
- if (!tmcycle) { org.castor.util.CycleBreaker.releaseCycleHandle(temp._name); };\r
- return false;\r
- }\r
- if (!thcycle) {\r
- if (!this._name.equals(temp._name)) {\r
- org.castor.util.CycleBreaker.releaseCycleHandle(this._name);\r
- org.castor.util.CycleBreaker.releaseCycleHandle(temp._name);\r
- return false;\r
- }\r
- org.castor.util.CycleBreaker.releaseCycleHandle(this._name);\r
- org.castor.util.CycleBreaker.releaseCycleHandle(temp._name);\r
- }\r
- }\r
- } else if (temp._name != null)\r
- return false;\r
- if (this._description != null) {\r
- if (temp._description == null) return false;\r
- if (this._description != temp._description) {\r
- thcycle=org.castor.util.CycleBreaker.startingToCycle(this._description);\r
- tmcycle=org.castor.util.CycleBreaker.startingToCycle(temp._description);\r
- if (thcycle!=tmcycle) {\r
- if (!thcycle) { org.castor.util.CycleBreaker.releaseCycleHandle(this._description); };\r
- if (!tmcycle) { org.castor.util.CycleBreaker.releaseCycleHandle(temp._description); };\r
- return false;\r
- }\r
- if (!thcycle) {\r
- if (!this._description.equals(temp._description)) {\r
- org.castor.util.CycleBreaker.releaseCycleHandle(this._description);\r
- org.castor.util.CycleBreaker.releaseCycleHandle(temp._description);\r
- return false;\r
- }\r
- org.castor.util.CycleBreaker.releaseCycleHandle(this._description);\r
- org.castor.util.CycleBreaker.releaseCycleHandle(temp._description);\r
- }\r
- }\r
- } else if (temp._description != null)\r
- return false;\r
- if (this._vrefList != null) {\r
- if (temp._vrefList == null) return false;\r
- if (this._vrefList != temp._vrefList) {\r
- thcycle=org.castor.util.CycleBreaker.startingToCycle(this._vrefList);\r
- tmcycle=org.castor.util.CycleBreaker.startingToCycle(temp._vrefList);\r
- if (thcycle!=tmcycle) {\r
- if (!thcycle) { org.castor.util.CycleBreaker.releaseCycleHandle(this._vrefList); };\r
- if (!tmcycle) { org.castor.util.CycleBreaker.releaseCycleHandle(temp._vrefList); };\r
- return false;\r
- }\r
- if (!thcycle) {\r
- if (!this._vrefList.equals(temp._vrefList)) {\r
- org.castor.util.CycleBreaker.releaseCycleHandle(this._vrefList);\r
- org.castor.util.CycleBreaker.releaseCycleHandle(temp._vrefList);\r
- return false;\r
- }\r
- org.castor.util.CycleBreaker.releaseCycleHandle(this._vrefList);\r
- org.castor.util.CycleBreaker.releaseCycleHandle(temp._vrefList);\r
- }\r
- }\r
- } else if (temp._vrefList != null)\r
- return false;\r
- if (this._propertyList != null) {\r
- if (temp._propertyList == null) return false;\r
- if (this._propertyList != temp._propertyList) {\r
- thcycle=org.castor.util.CycleBreaker.startingToCycle(this._propertyList);\r
- tmcycle=org.castor.util.CycleBreaker.startingToCycle(temp._propertyList);\r
- if (thcycle!=tmcycle) {\r
- if (!thcycle) { org.castor.util.CycleBreaker.releaseCycleHandle(this._propertyList); };\r
- if (!tmcycle) { org.castor.util.CycleBreaker.releaseCycleHandle(temp._propertyList); };\r
- return false;\r
- }\r
- if (!thcycle) {\r
- if (!this._propertyList.equals(temp._propertyList)) {\r
- org.castor.util.CycleBreaker.releaseCycleHandle(this._propertyList);\r
- org.castor.util.CycleBreaker.releaseCycleHandle(temp._propertyList);\r
- return false;\r
- }\r
- org.castor.util.CycleBreaker.releaseCycleHandle(this._propertyList);\r
- org.castor.util.CycleBreaker.releaseCycleHandle(temp._propertyList);\r
- }\r
- }\r
- } else if (temp._propertyList != null)\r
- return false;\r
- return true;\r
+ }\r
+ if (!thcycle) {\r
+ if (!this._id.equals(temp._id)) {\r
+ org.castor.util.CycleBreaker.releaseCycleHandle(this._id);\r
+ org.castor.util.CycleBreaker.releaseCycleHandle(temp._id);\r
+ return false;\r
+ }\r
+ org.castor.util.CycleBreaker.releaseCycleHandle(this._id);\r
+ org.castor.util.CycleBreaker.releaseCycleHandle(temp._id);\r
+ }\r
}\r
+ } else if (temp._id != null)\r
return false;\r
- }\r
-\r
- /**\r
- * Returns the value of field 'description'. The field\r
- * 'description' has the following description: Descriptive\r
- * text for this node\r
- * \r
- * @return the value of field 'Description'.\r
- */\r
- public java.lang.String getDescription(\r
- ) {\r
- return this._description;\r
- }\r
-\r
- /**\r
- * Returns the value of field 'id'. The field 'id' has the\r
- * following description: Primary Key for vamsas object\r
- * referencing \r
- * \r
- * @return the value of field 'Id'.\r
- */\r
- public java.lang.String getId(\r
- ) {\r
- return this._id;\r
- }\r
-\r
- /**\r
- * Returns the value of field 'modifiable'.\r
- * \r
- * @return the value of field 'Modifiable'.\r
- */\r
- public java.lang.String getModifiable(\r
- ) {\r
- return this._modifiable;\r
- }\r
-\r
- /**\r
- * Returns the value of field 'name'. The field 'name' has the\r
- * following description: Short name for this node\r
- * \r
- * @return the value of field 'Name'.\r
- */\r
- public java.lang.String getName(\r
- ) {\r
- return this._name;\r
- }\r
-\r
- /**\r
- * Method getProperty.\r
- * \r
- * @param index\r
- * @throws java.lang.IndexOutOfBoundsException if the index\r
- * given is outside the bounds of the collection\r
- * @return the value of the uk.ac.vamsas.objects.core.Property\r
- * at the given index\r
- */\r
- public uk.ac.vamsas.objects.core.Property getProperty(\r
- final int index)\r
- throws java.lang.IndexOutOfBoundsException {\r
- // check bounds for index\r
- if (index < 0 || index >= this._propertyList.size()) {\r
- throw new IndexOutOfBoundsException("getProperty: Index value '" + index + "' not in range [0.." + (this._propertyList.size() - 1) + "]");\r
- }\r
- \r
- return (uk.ac.vamsas.objects.core.Property) _propertyList.get(index);\r
- }\r
-\r
- /**\r
- * Method getProperty.Returns the contents of the collection in\r
- * an Array. <p>Note: Just in case the collection contents\r
- * are changing in another thread, we pass a 0-length Array of\r
- * the correct type into the API call. This way we <i>know</i>\r
- * that the Array returned is of exactly the correct length.\r
- * \r
- * @return this collection as an Array\r
- */\r
- public uk.ac.vamsas.objects.core.Property[] getProperty(\r
- ) {\r
- uk.ac.vamsas.objects.core.Property[] array = new uk.ac.vamsas.objects.core.Property[0];\r
- return (uk.ac.vamsas.objects.core.Property[]) this._propertyList.toArray(array);\r
- }\r
-\r
- /**\r
- * Method getPropertyAsReference.Returns a reference to\r
- * '_propertyList'. No type checking is performed on any\r
- * modifications to the Vector.\r
- * \r
- * @return a reference to the Vector backing this class\r
- */\r
- public java.util.Vector getPropertyAsReference(\r
- ) {\r
- return this._propertyList;\r
- }\r
-\r
- /**\r
- * Method getPropertyCount.\r
- * \r
- * @return the size of this collection\r
- */\r
- public int getPropertyCount(\r
- ) {\r
- return this._propertyList.size();\r
- }\r
-\r
- /**\r
- * Method getVref.\r
- * \r
- * @param index\r
- * @throws java.lang.IndexOutOfBoundsException if the index\r
- * given is outside the bounds of the collection\r
- * @return the value of the uk.ac.vamsas.objects.core.Vref at\r
- * the given index\r
- */\r
- public uk.ac.vamsas.objects.core.Vref getVref(\r
- final int index)\r
- throws java.lang.IndexOutOfBoundsException {\r
- // check bounds for index\r
- if (index < 0 || index >= this._vrefList.size()) {\r
- throw new IndexOutOfBoundsException("getVref: Index value '" + index + "' not in range [0.." + (this._vrefList.size() - 1) + "]");\r
- }\r
- \r
- return (uk.ac.vamsas.objects.core.Vref) _vrefList.get(index);\r
- }\r
-\r
- /**\r
- * Method getVref.Returns the contents of the collection in an\r
- * Array. <p>Note: Just in case the collection contents are\r
- * changing in another thread, we pass a 0-length Array of the\r
- * correct type into the API call. This way we <i>know</i>\r
- * that the Array returned is of exactly the correct length.\r
- * \r
- * @return this collection as an Array\r
- */\r
- public uk.ac.vamsas.objects.core.Vref[] getVref(\r
- ) {\r
- uk.ac.vamsas.objects.core.Vref[] array = new uk.ac.vamsas.objects.core.Vref[0];\r
- return (uk.ac.vamsas.objects.core.Vref[]) this._vrefList.toArray(array);\r
- }\r
-\r
- /**\r
- * Method getVrefAsReference.Returns a reference to\r
- * '_vrefList'. No type checking is performed on any\r
- * modifications to the Vector.\r
- * \r
- * @return a reference to the Vector backing this class\r
- */\r
- public java.util.Vector getVrefAsReference(\r
- ) {\r
- return this._vrefList;\r
- }\r
-\r
- /**\r
- * Method getVrefCount.\r
- * \r
- * @return the size of this collection\r
- */\r
- public int getVrefCount(\r
- ) {\r
- return this._vrefList.size();\r
- }\r
-\r
- /**\r
- * Overrides the java.lang.Object.hashCode method.\r
- * <p>\r
- * The following steps came from <b>Effective Java Programming\r
- * Language Guide</b> by Joshua Bloch, Chapter 3\r
- * \r
- * @return a hash code value for the object.\r
- */\r
- public int hashCode(\r
- ) {\r
- int result = super.hashCode();\r
- \r
- long tmp;\r
- if (_id != null\r
- && !org.castor.util.CycleBreaker.startingToCycle(_id)) {\r
- result = 37 * result + _id.hashCode();\r
- org.castor.util.CycleBreaker.releaseCycleHandle(_id);\r
- }\r
- if (_modifiable != null\r
- && !org.castor.util.CycleBreaker.startingToCycle(_modifiable)) {\r
- result = 37 * result + _modifiable.hashCode();\r
- org.castor.util.CycleBreaker.releaseCycleHandle(_modifiable);\r
- }\r
- if (_name != null\r
- && !org.castor.util.CycleBreaker.startingToCycle(_name)) {\r
- result = 37 * result + _name.hashCode();\r
- org.castor.util.CycleBreaker.releaseCycleHandle(_name);\r
- }\r
- if (_description != null\r
- && !org.castor.util.CycleBreaker.startingToCycle(_description)) {\r
- result = 37 * result + _description.hashCode();\r
- org.castor.util.CycleBreaker.releaseCycleHandle(_description);\r
- }\r
- if (_vrefList != null\r
- && !org.castor.util.CycleBreaker.startingToCycle(_vrefList)) {\r
- result = 37 * result + _vrefList.hashCode();\r
- org.castor.util.CycleBreaker.releaseCycleHandle(_vrefList);\r
- }\r
- if (_propertyList != null\r
- && !org.castor.util.CycleBreaker.startingToCycle(_propertyList)) {\r
- result = 37 * result + _propertyList.hashCode();\r
- org.castor.util.CycleBreaker.releaseCycleHandle(_propertyList);\r
- }\r
- \r
- return result;\r
- }\r
-\r
- /**\r
- * Method isValid.\r
- * \r
- * @return true if this object is valid according to the schema\r
- */\r
- public boolean isValid(\r
- ) {\r
- try {\r
- validate();\r
- } catch (org.exolab.castor.xml.ValidationException vex) {\r
+ if (this._modifiable != null) {\r
+ if (temp._modifiable == null)\r
+ return false;\r
+ if (this._modifiable != temp._modifiable) {\r
+ thcycle = org.castor.util.CycleBreaker\r
+ .startingToCycle(this._modifiable);\r
+ tmcycle = org.castor.util.CycleBreaker\r
+ .startingToCycle(temp._modifiable);\r
+ if (thcycle != tmcycle) {\r
+ if (!thcycle) {\r
+ org.castor.util.CycleBreaker.releaseCycleHandle(this._modifiable);\r
+ }\r
+ ;\r
+ if (!tmcycle) {\r
+ org.castor.util.CycleBreaker.releaseCycleHandle(temp._modifiable);\r
+ }\r
+ ;\r
return false;\r
+ }\r
+ if (!thcycle) {\r
+ if (!this._modifiable.equals(temp._modifiable)) {\r
+ org.castor.util.CycleBreaker.releaseCycleHandle(this._modifiable);\r
+ org.castor.util.CycleBreaker.releaseCycleHandle(temp._modifiable);\r
+ return false;\r
+ }\r
+ org.castor.util.CycleBreaker.releaseCycleHandle(this._modifiable);\r
+ org.castor.util.CycleBreaker.releaseCycleHandle(temp._modifiable);\r
+ }\r
}\r
- return true;\r
- }\r
-\r
- /**\r
- * \r
- * \r
- * @param out\r
- * @throws org.exolab.castor.xml.MarshalException if object is\r
- * null or if any SAXException is thrown during marshaling\r
- * @throws org.exolab.castor.xml.ValidationException if this\r
- * object is an invalid instance according to the schema\r
- */\r
- public void marshal(\r
- final java.io.Writer out)\r
- throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException {\r
- Marshaller.marshal(this, out);\r
- }\r
-\r
- /**\r
- * \r
- * \r
- * @param handler\r
- * @throws java.io.IOException if an IOException occurs during\r
- * marshaling\r
- * @throws org.exolab.castor.xml.ValidationException if this\r
- * object is an invalid instance according to the schema\r
- * @throws org.exolab.castor.xml.MarshalException if object is\r
- * null or if any SAXException is thrown during marshaling\r
- */\r
- public void marshal(\r
- final org.xml.sax.ContentHandler handler)\r
- throws java.io.IOException, org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException {\r
- Marshaller.marshal(this, handler);\r
- }\r
-\r
- /**\r
- */\r
- public void removeAllProperty(\r
- ) {\r
- this._propertyList.clear();\r
- }\r
-\r
- /**\r
- */\r
- public void removeAllVref(\r
- ) {\r
- this._vrefList.clear();\r
- }\r
-\r
- /**\r
- * Method removeProperty.\r
- * \r
- * @param vProperty\r
- * @return true if the object was removed from the collection.\r
- */\r
- public boolean removeProperty(\r
- final uk.ac.vamsas.objects.core.Property vProperty) {\r
- boolean removed = _propertyList.remove(vProperty);\r
- return removed;\r
- }\r
-\r
- /**\r
- * Method removePropertyAt.\r
- * \r
- * @param index\r
- * @return the element removed from the collection\r
- */\r
- public uk.ac.vamsas.objects.core.Property removePropertyAt(\r
- final int index) {\r
- java.lang.Object obj = this._propertyList.remove(index);\r
- return (uk.ac.vamsas.objects.core.Property) obj;\r
- }\r
-\r
- /**\r
- * Method removeVref.\r
- * \r
- * @param vVref\r
- * @return true if the object was removed from the collection.\r
- */\r
- public boolean removeVref(\r
- final uk.ac.vamsas.objects.core.Vref vVref) {\r
- boolean removed = _vrefList.remove(vVref);\r
- return removed;\r
- }\r
-\r
- /**\r
- * Method removeVrefAt.\r
- * \r
- * @param index\r
- * @return the element removed from the collection\r
- */\r
- public uk.ac.vamsas.objects.core.Vref removeVrefAt(\r
- final int index) {\r
- java.lang.Object obj = this._vrefList.remove(index);\r
- return (uk.ac.vamsas.objects.core.Vref) obj;\r
- }\r
-\r
- /**\r
- * Sets the value of field 'description'. The field\r
- * 'description' has the following description: Descriptive\r
- * text for this node\r
- * \r
- * @param description the value of field 'description'.\r
- */\r
- public void setDescription(\r
- final java.lang.String description) {\r
- this._description = description;\r
- }\r
-\r
- /**\r
- * Sets the value of field 'id'. The field 'id' has the\r
- * following description: Primary Key for vamsas object\r
- * referencing \r
- * \r
- * @param id the value of field 'id'.\r
- */\r
- public void setId(\r
- final java.lang.String id) {\r
- this._id = id;\r
- }\r
-\r
- /**\r
- * Sets the value of field 'modifiable'.\r
- * \r
- * @param modifiable the value of field 'modifiable'.\r
- */\r
- public void setModifiable(\r
- final java.lang.String modifiable) {\r
- this._modifiable = modifiable;\r
- }\r
-\r
- /**\r
- * Sets the value of field 'name'. The field 'name' has the\r
- * following description: Short name for this node\r
- * \r
- * @param name the value of field 'name'.\r
- */\r
- public void setName(\r
- final java.lang.String name) {\r
- this._name = name;\r
- }\r
-\r
- /**\r
- * \r
- * \r
- * @param index\r
- * @param vProperty\r
- * @throws java.lang.IndexOutOfBoundsException if the index\r
- * given is outside the bounds of the collection\r
- */\r
- public void setProperty(\r
- final int index,\r
- final uk.ac.vamsas.objects.core.Property vProperty)\r
- throws java.lang.IndexOutOfBoundsException {\r
- // check bounds for index\r
- if (index < 0 || index >= this._propertyList.size()) {\r
- throw new IndexOutOfBoundsException("setProperty: Index value '" + index + "' not in range [0.." + (this._propertyList.size() - 1) + "]");\r
+ } else if (temp._modifiable != null)\r
+ return false;\r
+ if (this._name != null) {\r
+ if (temp._name == null)\r
+ return false;\r
+ if (this._name != temp._name) {\r
+ thcycle = org.castor.util.CycleBreaker.startingToCycle(this._name);\r
+ tmcycle = org.castor.util.CycleBreaker.startingToCycle(temp._name);\r
+ if (thcycle != tmcycle) {\r
+ if (!thcycle) {\r
+ org.castor.util.CycleBreaker.releaseCycleHandle(this._name);\r
+ }\r
+ ;\r
+ if (!tmcycle) {\r
+ org.castor.util.CycleBreaker.releaseCycleHandle(temp._name);\r
+ }\r
+ ;\r
+ return false;\r
+ }\r
+ if (!thcycle) {\r
+ if (!this._name.equals(temp._name)) {\r
+ org.castor.util.CycleBreaker.releaseCycleHandle(this._name);\r
+ org.castor.util.CycleBreaker.releaseCycleHandle(temp._name);\r
+ return false;\r
+ }\r
+ org.castor.util.CycleBreaker.releaseCycleHandle(this._name);\r
+ org.castor.util.CycleBreaker.releaseCycleHandle(temp._name);\r
+ }\r
}\r
- \r
- this._propertyList.set(index, vProperty);\r
- }\r
-\r
- /**\r
- * \r
- * \r
- * @param vPropertyArray\r
- */\r
- public void setProperty(\r
- final uk.ac.vamsas.objects.core.Property[] vPropertyArray) {\r
- //-- copy array\r
- _propertyList.clear();\r
- \r
- for (int i = 0; i < vPropertyArray.length; i++) {\r
- this._propertyList.add(vPropertyArray[i]);\r
+ } else if (temp._name != null)\r
+ return false;\r
+ if (this._description != null) {\r
+ if (temp._description == null)\r
+ return false;\r
+ if (this._description != temp._description) {\r
+ thcycle = org.castor.util.CycleBreaker\r
+ .startingToCycle(this._description);\r
+ tmcycle = org.castor.util.CycleBreaker\r
+ .startingToCycle(temp._description);\r
+ if (thcycle != tmcycle) {\r
+ if (!thcycle) {\r
+ org.castor.util.CycleBreaker\r
+ .releaseCycleHandle(this._description);\r
+ }\r
+ ;\r
+ if (!tmcycle) {\r
+ org.castor.util.CycleBreaker\r
+ .releaseCycleHandle(temp._description);\r
+ }\r
+ ;\r
+ return false;\r
+ }\r
+ if (!thcycle) {\r
+ if (!this._description.equals(temp._description)) {\r
+ org.castor.util.CycleBreaker\r
+ .releaseCycleHandle(this._description);\r
+ org.castor.util.CycleBreaker\r
+ .releaseCycleHandle(temp._description);\r
+ return false;\r
+ }\r
+ org.castor.util.CycleBreaker.releaseCycleHandle(this._description);\r
+ org.castor.util.CycleBreaker.releaseCycleHandle(temp._description);\r
+ }\r
}\r
- }\r
-\r
- /**\r
- * Sets the value of '_propertyList' by copying the given\r
- * Vector. All elements will be checked for type safety.\r
- * \r
- * @param vPropertyList the Vector to copy.\r
- */\r
- public void setProperty(\r
- final java.util.Vector vPropertyList) {\r
- // copy vector\r
- this._propertyList.clear();\r
- \r
- this._propertyList.addAll(vPropertyList);\r
- }\r
-\r
- /**\r
- * Sets the value of '_propertyList' by setting it to the given\r
- * Vector. No type checking is performed.\r
- * @deprecated\r
- * \r
- * @param propertyVector the Vector to set.\r
- */\r
- public void setPropertyAsReference(\r
- final java.util.Vector propertyVector) {\r
- this._propertyList = propertyVector;\r
- }\r
-\r
- /**\r
- * \r
- * \r
- * @param index\r
- * @param vVref\r
- * @throws java.lang.IndexOutOfBoundsException if the index\r
- * given is outside the bounds of the collection\r
- */\r
- public void setVref(\r
- final int index,\r
- final uk.ac.vamsas.objects.core.Vref vVref)\r
- throws java.lang.IndexOutOfBoundsException {\r
- // check bounds for index\r
- if (index < 0 || index >= this._vrefList.size()) {\r
- throw new IndexOutOfBoundsException("setVref: Index value '" + index + "' not in range [0.." + (this._vrefList.size() - 1) + "]");\r
+ } else if (temp._description != null)\r
+ return false;\r
+ if (this._vrefList != null) {\r
+ if (temp._vrefList == null)\r
+ return false;\r
+ if (this._vrefList != temp._vrefList) {\r
+ thcycle = org.castor.util.CycleBreaker\r
+ .startingToCycle(this._vrefList);\r
+ tmcycle = org.castor.util.CycleBreaker\r
+ .startingToCycle(temp._vrefList);\r
+ if (thcycle != tmcycle) {\r
+ if (!thcycle) {\r
+ org.castor.util.CycleBreaker.releaseCycleHandle(this._vrefList);\r
+ }\r
+ ;\r
+ if (!tmcycle) {\r
+ org.castor.util.CycleBreaker.releaseCycleHandle(temp._vrefList);\r
+ }\r
+ ;\r
+ return false;\r
+ }\r
+ if (!thcycle) {\r
+ if (!this._vrefList.equals(temp._vrefList)) {\r
+ org.castor.util.CycleBreaker.releaseCycleHandle(this._vrefList);\r
+ org.castor.util.CycleBreaker.releaseCycleHandle(temp._vrefList);\r
+ return false;\r
+ }\r
+ org.castor.util.CycleBreaker.releaseCycleHandle(this._vrefList);\r
+ org.castor.util.CycleBreaker.releaseCycleHandle(temp._vrefList);\r
+ }\r
}\r
- \r
- this._vrefList.set(index, vVref);\r
- }\r
-\r
- /**\r
- * \r
- * \r
- * @param vVrefArray\r
- */\r
- public void setVref(\r
- final uk.ac.vamsas.objects.core.Vref[] vVrefArray) {\r
- //-- copy array\r
- _vrefList.clear();\r
- \r
- for (int i = 0; i < vVrefArray.length; i++) {\r
- this._vrefList.add(vVrefArray[i]);\r
+ } else if (temp._vrefList != null)\r
+ return false;\r
+ if (this._propertyList != null) {\r
+ if (temp._propertyList == null)\r
+ return false;\r
+ if (this._propertyList != temp._propertyList) {\r
+ thcycle = org.castor.util.CycleBreaker\r
+ .startingToCycle(this._propertyList);\r
+ tmcycle = org.castor.util.CycleBreaker\r
+ .startingToCycle(temp._propertyList);\r
+ if (thcycle != tmcycle) {\r
+ if (!thcycle) {\r
+ org.castor.util.CycleBreaker\r
+ .releaseCycleHandle(this._propertyList);\r
+ }\r
+ ;\r
+ if (!tmcycle) {\r
+ org.castor.util.CycleBreaker\r
+ .releaseCycleHandle(temp._propertyList);\r
+ }\r
+ ;\r
+ return false;\r
+ }\r
+ if (!thcycle) {\r
+ if (!this._propertyList.equals(temp._propertyList)) {\r
+ org.castor.util.CycleBreaker\r
+ .releaseCycleHandle(this._propertyList);\r
+ org.castor.util.CycleBreaker\r
+ .releaseCycleHandle(temp._propertyList);\r
+ return false;\r
+ }\r
+ org.castor.util.CycleBreaker.releaseCycleHandle(this._propertyList);\r
+ org.castor.util.CycleBreaker.releaseCycleHandle(temp._propertyList);\r
+ }\r
}\r
- }\r
-\r
- /**\r
- * Sets the value of '_vrefList' by copying the given Vector.\r
- * All elements will be checked for type safety.\r
- * \r
- * @param vVrefList the Vector to copy.\r
- */\r
- public void setVref(\r
- final java.util.Vector vVrefList) {\r
- // copy vector\r
- this._vrefList.clear();\r
- \r
- this._vrefList.addAll(vVrefList);\r
- }\r
-\r
- /**\r
- * Sets the value of '_vrefList' by setting it to the given\r
- * Vector. No type checking is performed.\r
- * @deprecated\r
- * \r
- * @param vrefVector the Vector to set.\r
- */\r
- public void setVrefAsReference(\r
- final java.util.Vector vrefVector) {\r
- this._vrefList = vrefVector;\r
- }\r
-\r
- /**\r
- * Method unmarshal.\r
- * \r
- * @param reader\r
- * @throws org.exolab.castor.xml.MarshalException if object is\r
- * null or if any SAXException is thrown during marshaling\r
- * @throws org.exolab.castor.xml.ValidationException if this\r
- * object is an invalid instance according to the schema\r
- * @return the unmarshaled uk.ac.vamsas.objects.core.NodeType\r
- */\r
- public static uk.ac.vamsas.objects.core.NodeType unmarshal(\r
- final java.io.Reader reader)\r
- throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException {\r
- return (uk.ac.vamsas.objects.core.NodeType) Unmarshaller.unmarshal(uk.ac.vamsas.objects.core.NodeType.class, reader);\r
- }\r
-\r
- /**\r
- * \r
- * \r
- * @throws org.exolab.castor.xml.ValidationException if this\r
- * object is an invalid instance according to the schema\r
- */\r
- public void validate(\r
- )\r
- throws org.exolab.castor.xml.ValidationException {\r
- org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml.Validator();\r
- validator.validate(this);\r
- }\r
+ } else if (temp._propertyList != null)\r
+ return false;\r
+ return true;\r
+ }\r
+ return false;\r
+ }\r
+\r
+ /**\r
+ * Returns the value of field 'description'. The field 'description' has the\r
+ * following description: Descriptive text for this node\r
+ * \r
+ * @return the value of field 'Description'.\r
+ */\r
+ public java.lang.String getDescription() {\r
+ return this._description;\r
+ }\r
+\r
+ /**\r
+ * Returns the value of field 'id'. The field 'id' has the following\r
+ * description: Primary Key for vamsas object referencing\r
+ * \r
+ * @return the value of field 'Id'.\r
+ */\r
+ public java.lang.String getId() {\r
+ return this._id;\r
+ }\r
+\r
+ /**\r
+ * Returns the value of field 'modifiable'.\r
+ * \r
+ * @return the value of field 'Modifiable'.\r
+ */\r
+ public java.lang.String getModifiable() {\r
+ return this._modifiable;\r
+ }\r
+\r
+ /**\r
+ * Returns the value of field 'name'. The field 'name' has the following\r
+ * description: Short name for this node\r
+ * \r
+ * @return the value of field 'Name'.\r
+ */\r
+ public java.lang.String getName() {\r
+ return this._name;\r
+ }\r
+\r
+ /**\r
+ * Method getProperty.\r
+ * \r
+ * @param index\r
+ * @throws java.lang.IndexOutOfBoundsException\r
+ * if the index given is outside the bounds of the collection\r
+ * @return the value of the uk.ac.vamsas.objects.core.Property at the given\r
+ * index\r
+ */\r
+ public uk.ac.vamsas.objects.core.Property getProperty(final int index)\r
+ throws java.lang.IndexOutOfBoundsException {\r
+ // check bounds for index\r
+ if (index < 0 || index >= this._propertyList.size()) {\r
+ throw new IndexOutOfBoundsException("getProperty: Index value '" + index\r
+ + "' not in range [0.." + (this._propertyList.size() - 1) + "]");\r
+ }\r
+\r
+ return (uk.ac.vamsas.objects.core.Property) _propertyList.get(index);\r
+ }\r
+\r
+ /**\r
+ * Method getProperty.Returns the contents of the collection in an Array.\r
+ * <p>\r
+ * Note: Just in case the collection contents are changing in another thread,\r
+ * we pass a 0-length Array of the correct type into the API call. This way we\r
+ * <i>know</i> that the Array returned is of exactly the correct length.\r
+ * \r
+ * @return this collection as an Array\r
+ */\r
+ public uk.ac.vamsas.objects.core.Property[] getProperty() {\r
+ uk.ac.vamsas.objects.core.Property[] array = new uk.ac.vamsas.objects.core.Property[0];\r
+ return (uk.ac.vamsas.objects.core.Property[]) this._propertyList\r
+ .toArray(array);\r
+ }\r
+\r
+ /**\r
+ * Method getPropertyAsReference.Returns a reference to '_propertyList'. No\r
+ * type checking is performed on any modifications to the Vector.\r
+ * \r
+ * @return a reference to the Vector backing this class\r
+ */\r
+ public java.util.Vector getPropertyAsReference() {\r
+ return this._propertyList;\r
+ }\r
+\r
+ /**\r
+ * Method getPropertyCount.\r
+ * \r
+ * @return the size of this collection\r
+ */\r
+ public int getPropertyCount() {\r
+ return this._propertyList.size();\r
+ }\r
+\r
+ /**\r
+ * Method getVref.\r
+ * \r
+ * @param index\r
+ * @throws java.lang.IndexOutOfBoundsException\r
+ * if the index given is outside the bounds of the collection\r
+ * @return the value of the uk.ac.vamsas.objects.core.Vref at the given index\r
+ */\r
+ public uk.ac.vamsas.objects.core.Vref getVref(final int index)\r
+ throws java.lang.IndexOutOfBoundsException {\r
+ // check bounds for index\r
+ if (index < 0 || index >= this._vrefList.size()) {\r
+ throw new IndexOutOfBoundsException("getVref: Index value '" + index\r
+ + "' not in range [0.." + (this._vrefList.size() - 1) + "]");\r
+ }\r
+\r
+ return (uk.ac.vamsas.objects.core.Vref) _vrefList.get(index);\r
+ }\r
+\r
+ /**\r
+ * Method getVref.Returns the contents of the collection in an Array.\r
+ * <p>\r
+ * Note: Just in case the collection contents are changing in another thread,\r
+ * we pass a 0-length Array of the correct type into the API call. This way we\r
+ * <i>know</i> that the Array returned is of exactly the correct length.\r
+ * \r
+ * @return this collection as an Array\r
+ */\r
+ public uk.ac.vamsas.objects.core.Vref[] getVref() {\r
+ uk.ac.vamsas.objects.core.Vref[] array = new uk.ac.vamsas.objects.core.Vref[0];\r
+ return (uk.ac.vamsas.objects.core.Vref[]) this._vrefList.toArray(array);\r
+ }\r
+\r
+ /**\r
+ * Method getVrefAsReference.Returns a reference to '_vrefList'. No type\r
+ * checking is performed on any modifications to the Vector.\r
+ * \r
+ * @return a reference to the Vector backing this class\r
+ */\r
+ public java.util.Vector getVrefAsReference() {\r
+ return this._vrefList;\r
+ }\r
+\r
+ /**\r
+ * Method getVrefCount.\r
+ * \r
+ * @return the size of this collection\r
+ */\r
+ public int getVrefCount() {\r
+ return this._vrefList.size();\r
+ }\r
+\r
+ /**\r
+ * Overrides the java.lang.Object.hashCode method.\r
+ * <p>\r
+ * The following steps came from <b>Effective Java Programming Language\r
+ * Guide</b> by Joshua Bloch, Chapter 3\r
+ * \r
+ * @return a hash code value for the object.\r
+ */\r
+ public int hashCode() {\r
+ int result = super.hashCode();\r
+\r
+ long tmp;\r
+ if (_id != null && !org.castor.util.CycleBreaker.startingToCycle(_id)) {\r
+ result = 37 * result + _id.hashCode();\r
+ org.castor.util.CycleBreaker.releaseCycleHandle(_id);\r
+ }\r
+ if (_modifiable != null\r
+ && !org.castor.util.CycleBreaker.startingToCycle(_modifiable)) {\r
+ result = 37 * result + _modifiable.hashCode();\r
+ org.castor.util.CycleBreaker.releaseCycleHandle(_modifiable);\r
+ }\r
+ if (_name != null && !org.castor.util.CycleBreaker.startingToCycle(_name)) {\r
+ result = 37 * result + _name.hashCode();\r
+ org.castor.util.CycleBreaker.releaseCycleHandle(_name);\r
+ }\r
+ if (_description != null\r
+ && !org.castor.util.CycleBreaker.startingToCycle(_description)) {\r
+ result = 37 * result + _description.hashCode();\r
+ org.castor.util.CycleBreaker.releaseCycleHandle(_description);\r
+ }\r
+ if (_vrefList != null\r
+ && !org.castor.util.CycleBreaker.startingToCycle(_vrefList)) {\r
+ result = 37 * result + _vrefList.hashCode();\r
+ org.castor.util.CycleBreaker.releaseCycleHandle(_vrefList);\r
+ }\r
+ if (_propertyList != null\r
+ && !org.castor.util.CycleBreaker.startingToCycle(_propertyList)) {\r
+ result = 37 * result + _propertyList.hashCode();\r
+ org.castor.util.CycleBreaker.releaseCycleHandle(_propertyList);\r
+ }\r
+\r
+ return result;\r
+ }\r
+\r
+ /**\r
+ * Method isValid.\r
+ * \r
+ * @return true if this object is valid according to the schema\r
+ */\r
+ public boolean isValid() {\r
+ try {\r
+ validate();\r
+ } catch (org.exolab.castor.xml.ValidationException vex) {\r
+ return false;\r
+ }\r
+ return true;\r
+ }\r
+\r
+ /**\r
+ * \r
+ * \r
+ * @param out\r
+ * @throws org.exolab.castor.xml.MarshalException\r
+ * if object is null or if any SAXException is thrown during\r
+ * marshaling\r
+ * @throws org.exolab.castor.xml.ValidationException\r
+ * if this object is an invalid instance according to the schema\r
+ */\r
+ public void marshal(final java.io.Writer out)\r
+ throws org.exolab.castor.xml.MarshalException,\r
+ org.exolab.castor.xml.ValidationException {\r
+ Marshaller.marshal(this, out);\r
+ }\r
+\r
+ /**\r
+ * \r
+ * \r
+ * @param handler\r
+ * @throws java.io.IOException\r
+ * if an IOException occurs during marshaling\r
+ * @throws org.exolab.castor.xml.ValidationException\r
+ * if this object is an invalid instance according to the schema\r
+ * @throws org.exolab.castor.xml.MarshalException\r
+ * if object is null or if any SAXException is thrown during\r
+ * marshaling\r
+ */\r
+ public void marshal(final org.xml.sax.ContentHandler handler)\r
+ throws java.io.IOException, org.exolab.castor.xml.MarshalException,\r
+ org.exolab.castor.xml.ValidationException {\r
+ Marshaller.marshal(this, handler);\r
+ }\r
+\r
+ /**\r
+ */\r
+ public void removeAllProperty() {\r
+ this._propertyList.clear();\r
+ }\r
+\r
+ /**\r
+ */\r
+ public void removeAllVref() {\r
+ this._vrefList.clear();\r
+ }\r
+\r
+ /**\r
+ * Method removeProperty.\r
+ * \r
+ * @param vProperty\r
+ * @return true if the object was removed from the collection.\r
+ */\r
+ public boolean removeProperty(\r
+ final uk.ac.vamsas.objects.core.Property vProperty) {\r
+ boolean removed = _propertyList.remove(vProperty);\r
+ return removed;\r
+ }\r
+\r
+ /**\r
+ * Method removePropertyAt.\r
+ * \r
+ * @param index\r
+ * @return the element removed from the collection\r
+ */\r
+ public uk.ac.vamsas.objects.core.Property removePropertyAt(final int index) {\r
+ java.lang.Object obj = this._propertyList.remove(index);\r
+ return (uk.ac.vamsas.objects.core.Property) obj;\r
+ }\r
+\r
+ /**\r
+ * Method removeVref.\r
+ * \r
+ * @param vVref\r
+ * @return true if the object was removed from the collection.\r
+ */\r
+ public boolean removeVref(final uk.ac.vamsas.objects.core.Vref vVref) {\r
+ boolean removed = _vrefList.remove(vVref);\r
+ return removed;\r
+ }\r
+\r
+ /**\r
+ * Method removeVrefAt.\r
+ * \r
+ * @param index\r
+ * @return the element removed from the collection\r
+ */\r
+ public uk.ac.vamsas.objects.core.Vref removeVrefAt(final int index) {\r
+ java.lang.Object obj = this._vrefList.remove(index);\r
+ return (uk.ac.vamsas.objects.core.Vref) obj;\r
+ }\r
+\r
+ /**\r
+ * Sets the value of field 'description'. The field 'description' has the\r
+ * following description: Descriptive text for this node\r
+ * \r
+ * @param description\r
+ * the value of field 'description'.\r
+ */\r
+ public void setDescription(final java.lang.String description) {\r
+ this._description = description;\r
+ }\r
+\r
+ /**\r
+ * Sets the value of field 'id'. The field 'id' has the following description:\r
+ * Primary Key for vamsas object referencing\r
+ * \r
+ * @param id\r
+ * the value of field 'id'.\r
+ */\r
+ public void setId(final java.lang.String id) {\r
+ this._id = id;\r
+ }\r
+\r
+ /**\r
+ * Sets the value of field 'modifiable'.\r
+ * \r
+ * @param modifiable\r
+ * the value of field 'modifiable'.\r
+ */\r
+ public void setModifiable(final java.lang.String modifiable) {\r
+ this._modifiable = modifiable;\r
+ }\r
+\r
+ /**\r
+ * Sets the value of field 'name'. The field 'name' has the following\r
+ * description: Short name for this node\r
+ * \r
+ * @param name\r
+ * the value of field 'name'.\r
+ */\r
+ public void setName(final java.lang.String name) {\r
+ this._name = name;\r
+ }\r
+\r
+ /**\r
+ * \r
+ * \r
+ * @param index\r
+ * @param vProperty\r
+ * @throws java.lang.IndexOutOfBoundsException\r
+ * if the index given is outside the bounds of the collection\r
+ */\r
+ public void setProperty(final int index,\r
+ final uk.ac.vamsas.objects.core.Property vProperty)\r
+ throws java.lang.IndexOutOfBoundsException {\r
+ // check bounds for index\r
+ if (index < 0 || index >= this._propertyList.size()) {\r
+ throw new IndexOutOfBoundsException("setProperty: Index value '" + index\r
+ + "' not in range [0.." + (this._propertyList.size() - 1) + "]");\r
+ }\r
+\r
+ this._propertyList.set(index, vProperty);\r
+ }\r
+\r
+ /**\r
+ * \r
+ * \r
+ * @param vPropertyArray\r
+ */\r
+ public void setProperty(\r
+ final uk.ac.vamsas.objects.core.Property[] vPropertyArray) {\r
+ // -- copy array\r
+ _propertyList.clear();\r
+\r
+ for (int i = 0; i < vPropertyArray.length; i++) {\r
+ this._propertyList.add(vPropertyArray[i]);\r
+ }\r
+ }\r
+\r
+ /**\r
+ * Sets the value of '_propertyList' by copying the given Vector. All elements\r
+ * will be checked for type safety.\r
+ * \r
+ * @param vPropertyList\r
+ * the Vector to copy.\r
+ */\r
+ public void setProperty(final java.util.Vector vPropertyList) {\r
+ // copy vector\r
+ this._propertyList.clear();\r
+\r
+ this._propertyList.addAll(vPropertyList);\r
+ }\r
+\r
+ /**\r
+ * Sets the value of '_propertyList' by setting it to the given Vector. No\r
+ * type checking is performed.\r
+ * \r
+ * @deprecated\r
+ * \r
+ * @param propertyVector\r
+ * the Vector to set.\r
+ */\r
+ public void setPropertyAsReference(final java.util.Vector propertyVector) {\r
+ this._propertyList = propertyVector;\r
+ }\r
+\r
+ /**\r
+ * \r
+ * \r
+ * @param index\r
+ * @param vVref\r
+ * @throws java.lang.IndexOutOfBoundsException\r
+ * if the index given is outside the bounds of the collection\r
+ */\r
+ public void setVref(final int index,\r
+ final uk.ac.vamsas.objects.core.Vref vVref)\r
+ throws java.lang.IndexOutOfBoundsException {\r
+ // check bounds for index\r
+ if (index < 0 || index >= this._vrefList.size()) {\r
+ throw new IndexOutOfBoundsException("setVref: Index value '" + index\r
+ + "' not in range [0.." + (this._vrefList.size() - 1) + "]");\r
+ }\r
+\r
+ this._vrefList.set(index, vVref);\r
+ }\r
+\r
+ /**\r
+ * \r
+ * \r
+ * @param vVrefArray\r
+ */\r
+ public void setVref(final uk.ac.vamsas.objects.core.Vref[] vVrefArray) {\r
+ // -- copy array\r
+ _vrefList.clear();\r
+\r
+ for (int i = 0; i < vVrefArray.length; i++) {\r
+ this._vrefList.add(vVrefArray[i]);\r
+ }\r
+ }\r
+\r
+ /**\r
+ * Sets the value of '_vrefList' by copying the given Vector. All elements\r
+ * will be checked for type safety.\r
+ * \r
+ * @param vVrefList\r
+ * the Vector to copy.\r
+ */\r
+ public void setVref(final java.util.Vector vVrefList) {\r
+ // copy vector\r
+ this._vrefList.clear();\r
+\r
+ this._vrefList.addAll(vVrefList);\r
+ }\r
+\r
+ /**\r
+ * Sets the value of '_vrefList' by setting it to the given Vector. No type\r
+ * checking is performed.\r
+ * \r
+ * @deprecated\r
+ * \r
+ * @param vrefVector\r
+ * the Vector to set.\r
+ */\r
+ public void setVrefAsReference(final java.util.Vector vrefVector) {\r
+ this._vrefList = vrefVector;\r
+ }\r
+\r
+ /**\r
+ * Method unmarshal.\r
+ * \r
+ * @param reader\r
+ * @throws org.exolab.castor.xml.MarshalException\r
+ * if object is null or if any SAXException is thrown during\r
+ * marshaling\r
+ * @throws org.exolab.castor.xml.ValidationException\r
+ * if this object is an invalid instance according to the schema\r
+ * @return the unmarshaled uk.ac.vamsas.objects.core.NodeType\r
+ */\r
+ public static uk.ac.vamsas.objects.core.NodeType unmarshal(\r
+ final java.io.Reader reader)\r
+ throws org.exolab.castor.xml.MarshalException,\r
+ org.exolab.castor.xml.ValidationException {\r
+ return (uk.ac.vamsas.objects.core.NodeType) Unmarshaller.unmarshal(\r
+ uk.ac.vamsas.objects.core.NodeType.class, reader);\r
+ }\r
+\r
+ /**\r
+ * \r
+ * \r
+ * @throws org.exolab.castor.xml.ValidationException\r
+ * if this object is an invalid instance according to the schema\r
+ */\r
+ public void validate() throws org.exolab.castor.xml.ValidationException {\r
+ org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml.Validator();\r
+ validator.validate(this);\r
+ }\r
\r
}\r
git://source.jalview.org / vamsas.git / blobdiff