/*\r
- * This class was automatically generated with \r
- * <a href="http://www.castor.org">Castor 1.1</a>, using an XML\r
- * Schema.\r
- * $Id$\r
+ * This file is part of the Vamsas Client version 0.1. \r
+ * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, \r
+ * Andrew Waterhouse and Dominik Lindner.\r
+ * \r
+ * Earlier versions have also been incorporated into Jalview version 2.4 \r
+ * since 2008, and TOPALi version 2 since 2007.\r
+ * \r
+ * The Vamsas Client is free software: you can redistribute it and/or modify\r
+ * it under the terms of the GNU Lesser General Public License as published by\r
+ * the Free Software Foundation, either version 3 of the License, or\r
+ * (at your option) any later version.\r
+ * \r
+ * The Vamsas Client is distributed in the hope that it will be useful,\r
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of\r
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the\r
+ * GNU Lesser General Public License for more details.\r
+ * \r
+ * You should have received a copy of the GNU Lesser General Public License\r
+ * along with the Vamsas Client. If not, see <http://www.gnu.org/licenses/>.\r
*/\r
-\r
package uk.ac.vamsas.objects.core.descriptors;\r
\r
- //---------------------------------/\r
- //- Imported classes and packages -/\r
+//---------------------------------/\r
+//- Imported classes and packages -/\r
//---------------------------------/\r
\r
import uk.ac.vamsas.objects.core.DataSet;\r
* \r
* @version $Revision$ $Date$\r
*/\r
-public class DataSetDescriptor extends org.exolab.castor.xml.util.XMLClassDescriptorImpl {\r
-\r
-\r
- //--------------------------/\r
- //- Class/Member Variables -/\r
- //--------------------------/\r
-\r
- /**\r
- * Field _elementDefinition.\r
- */\r
- private boolean _elementDefinition;\r
-\r
- /**\r
- * Field _nsPrefix.\r
- */\r
- private java.lang.String _nsPrefix;\r
-\r
- /**\r
- * Field _nsURI.\r
- */\r
- private java.lang.String _nsURI;\r
-\r
- /**\r
- * Field _xmlName.\r
- */\r
- private java.lang.String _xmlName;\r
-\r
-\r
- //----------------/\r
- //- Constructors -/\r
- //----------------/\r
-\r
- public DataSetDescriptor() {\r
- super();\r
- _nsURI = "http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes";\r
- _xmlName = "DataSet";\r
- _elementDefinition = true;\r
- \r
- //-- set grouping compositor\r
- setCompositorAsSequence();\r
- org.exolab.castor.xml.util.XMLFieldDescriptorImpl desc = null;\r
- org.exolab.castor.mapping.FieldHandler handler = null;\r
- org.exolab.castor.xml.FieldValidator fieldValidator = null;\r
- //-- initialize attribute descriptors\r
- \r
- //-- _id\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.String.class, "_id", "id", org.exolab.castor.xml.NodeType.Attribute);\r
- super.setIdentity(desc);\r
- handler = new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- DataSet target = (DataSet) object;\r
- return target.getId();\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- DataSet target = (DataSet) object;\r
- target.setId( (java.lang.String) value);\r
- } catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance(java.lang.Object parent) {\r
- return new java.lang.String();\r
- }\r
- };\r
- desc.setHandler(handler);\r
- desc.setMultivalued(false);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _id\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- { //-- local scope\r
- org.exolab.castor.xml.validators.IdValidator typeValidator;\r
- typeValidator = new org.exolab.castor.xml.validators.IdValidator();\r
- fieldValidator.setValidator(typeValidator);\r
+public class DataSetDescriptor extends\r
+ org.exolab.castor.xml.util.XMLClassDescriptorImpl {\r
+\r
+ // --------------------------/\r
+ // - Class/Member Variables -/\r
+ // --------------------------/\r
+\r
+ /**\r
+ * Field _elementDefinition.\r
+ */\r
+ private boolean _elementDefinition;\r
+\r
+ /**\r
+ * Field _nsPrefix.\r
+ */\r
+ private java.lang.String _nsPrefix;\r
+\r
+ /**\r
+ * Field _nsURI.\r
+ */\r
+ private java.lang.String _nsURI;\r
+\r
+ /**\r
+ * Field _xmlName.\r
+ */\r
+ private java.lang.String _xmlName;\r
+\r
+ // ----------------/\r
+ // - Constructors -/\r
+ // ----------------/\r
+\r
+ public DataSetDescriptor() {\r
+ super();\r
+ _nsURI = "http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes";\r
+ _xmlName = "DataSet";\r
+ _elementDefinition = true;\r
+\r
+ // -- set grouping compositor\r
+ setCompositorAsSequence();\r
+ org.exolab.castor.xml.util.XMLFieldDescriptorImpl desc = null;\r
+ org.exolab.castor.mapping.FieldHandler handler = null;\r
+ org.exolab.castor.xml.FieldValidator fieldValidator = null;\r
+ // -- initialize attribute descriptors\r
+\r
+ // -- _id\r
+ desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(\r
+ java.lang.String.class, "_id", "id",\r
+ org.exolab.castor.xml.NodeType.Attribute);\r
+ super.setIdentity(desc);\r
+ handler = new org.exolab.castor.xml.XMLFieldHandler() {\r
+ public java.lang.Object getValue(java.lang.Object object)\r
+ throws IllegalStateException {\r
+ DataSet target = (DataSet) object;\r
+ return target.getId();\r
+ }\r
+\r
+ public void setValue(java.lang.Object object, java.lang.Object value)\r
+ throws IllegalStateException, IllegalArgumentException {\r
+ try {\r
+ DataSet target = (DataSet) object;\r
+ target.setId((java.lang.String) value);\r
+ } catch (java.lang.Exception ex) {\r
+ throw new IllegalStateException(ex.toString());\r
}\r
- desc.setValidator(fieldValidator);\r
- //-- initialize element descriptors\r
- \r
- //-- _sequenceList\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(uk.ac.vamsas.objects.core.Sequence.class, "_sequenceList", "Sequence", org.exolab.castor.xml.NodeType.Element);\r
- handler = new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- DataSet target = (DataSet) object;\r
- return target.getSequence();\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- DataSet target = (DataSet) object;\r
- target.addSequence( (uk.ac.vamsas.objects.core.Sequence) value);\r
- } catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public void resetValue(Object object) throws IllegalStateException, IllegalArgumentException {\r
- try {\r
- DataSet target = (DataSet) object;\r
- target.removeAllSequence();\r
- } catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance(java.lang.Object parent) {\r
- return new uk.ac.vamsas.objects.core.Sequence();\r
- }\r
- };\r
- desc.setHandler(handler);\r
- desc.setNameSpaceURI("http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes");\r
- desc.setRequired(true);\r
- desc.setMultivalued(true);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _sequenceList\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- fieldValidator.setMinOccurs(1);\r
- { //-- local scope\r
+ }\r
+\r
+ public java.lang.Object newInstance(java.lang.Object parent) {\r
+ return new java.lang.String();\r
+ }\r
+ };\r
+ desc.setHandler(handler);\r
+ desc.setMultivalued(false);\r
+ addFieldDescriptor(desc);\r
+\r
+ // -- validation code for: _id\r
+ fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
+ { // -- local scope\r
+ org.exolab.castor.xml.validators.IdValidator typeValidator;\r
+ typeValidator = new org.exolab.castor.xml.validators.IdValidator();\r
+ fieldValidator.setValidator(typeValidator);\r
+ }\r
+ desc.setValidator(fieldValidator);\r
+ // -- initialize element descriptors\r
+\r
+ // -- _sequenceList\r
+ desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(\r
+ uk.ac.vamsas.objects.core.Sequence.class, "_sequenceList", "Sequence",\r
+ org.exolab.castor.xml.NodeType.Element);\r
+ handler = new org.exolab.castor.xml.XMLFieldHandler() {\r
+ public java.lang.Object getValue(java.lang.Object object)\r
+ throws IllegalStateException {\r
+ DataSet target = (DataSet) object;\r
+ return target.getSequence();\r
+ }\r
+\r
+ public void setValue(java.lang.Object object, java.lang.Object value)\r
+ throws IllegalStateException, IllegalArgumentException {\r
+ try {\r
+ DataSet target = (DataSet) object;\r
+ target.addSequence((uk.ac.vamsas.objects.core.Sequence) value);\r
+ } catch (java.lang.Exception ex) {\r
+ throw new IllegalStateException(ex.toString());\r
}\r
- desc.setValidator(fieldValidator);\r
- //-- _sequenceMappingList\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(uk.ac.vamsas.objects.core.SequenceMapping.class, "_sequenceMappingList", "sequenceMapping", org.exolab.castor.xml.NodeType.Element);\r
- handler = new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- DataSet target = (DataSet) object;\r
- return target.getSequenceMapping();\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- DataSet target = (DataSet) object;\r
- target.addSequenceMapping( (uk.ac.vamsas.objects.core.SequenceMapping) value);\r
- } catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public void resetValue(Object object) throws IllegalStateException, IllegalArgumentException {\r
- try {\r
- DataSet target = (DataSet) object;\r
- target.removeAllSequenceMapping();\r
- } catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance(java.lang.Object parent) {\r
- return new uk.ac.vamsas.objects.core.SequenceMapping();\r
- }\r
- };\r
- desc.setHandler(handler);\r
- desc.setNameSpaceURI("http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes");\r
- desc.setMultivalued(true);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _sequenceMappingList\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- fieldValidator.setMinOccurs(0);\r
- { //-- local scope\r
+ }\r
+\r
+ public void resetValue(Object object) throws IllegalStateException,\r
+ IllegalArgumentException {\r
+ try {\r
+ DataSet target = (DataSet) object;\r
+ target.removeAllSequence();\r
+ } catch (java.lang.Exception ex) {\r
+ throw new IllegalStateException(ex.toString());\r
}\r
- desc.setValidator(fieldValidator);\r
- //-- _dataSetAnnotationsList\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(uk.ac.vamsas.objects.core.DataSetAnnotations.class, "_dataSetAnnotationsList", "DataSetAnnotations", org.exolab.castor.xml.NodeType.Element);\r
- handler = new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- DataSet target = (DataSet) object;\r
- return target.getDataSetAnnotations();\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- DataSet target = (DataSet) object;\r
- target.addDataSetAnnotations( (uk.ac.vamsas.objects.core.DataSetAnnotations) value);\r
- } catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public void resetValue(Object object) throws IllegalStateException, IllegalArgumentException {\r
- try {\r
- DataSet target = (DataSet) object;\r
- target.removeAllDataSetAnnotations();\r
- } catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance(java.lang.Object parent) {\r
- return new uk.ac.vamsas.objects.core.DataSetAnnotations();\r
- }\r
- };\r
- desc.setHandler(handler);\r
- desc.setNameSpaceURI("http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes");\r
- desc.setMultivalued(true);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _dataSetAnnotationsList\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- fieldValidator.setMinOccurs(0);\r
- { //-- local scope\r
+ }\r
+\r
+ public java.lang.Object newInstance(java.lang.Object parent) {\r
+ return new uk.ac.vamsas.objects.core.Sequence();\r
+ }\r
+ };\r
+ desc.setHandler(handler);\r
+ desc.setNameSpaceURI("http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes");\r
+ desc.setRequired(true);\r
+ desc.setMultivalued(true);\r
+ addFieldDescriptor(desc);\r
+\r
+ // -- validation code for: _sequenceList\r
+ fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
+ fieldValidator.setMinOccurs(1);\r
+ { // -- local scope\r
+ }\r
+ desc.setValidator(fieldValidator);\r
+ // -- _sequenceMappingList\r
+ desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(\r
+ uk.ac.vamsas.objects.core.SequenceMapping.class,\r
+ "_sequenceMappingList", "sequenceMapping",\r
+ org.exolab.castor.xml.NodeType.Element);\r
+ handler = new org.exolab.castor.xml.XMLFieldHandler() {\r
+ public java.lang.Object getValue(java.lang.Object object)\r
+ throws IllegalStateException {\r
+ DataSet target = (DataSet) object;\r
+ return target.getSequenceMapping();\r
+ }\r
+\r
+ public void setValue(java.lang.Object object, java.lang.Object value)\r
+ throws IllegalStateException, IllegalArgumentException {\r
+ try {\r
+ DataSet target = (DataSet) object;\r
+ target\r
+ .addSequenceMapping((uk.ac.vamsas.objects.core.SequenceMapping) value);\r
+ } catch (java.lang.Exception ex) {\r
+ throw new IllegalStateException(ex.toString());\r
}\r
- desc.setValidator(fieldValidator);\r
- //-- _alignmentList\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(uk.ac.vamsas.objects.core.Alignment.class, "_alignmentList", "Alignment", org.exolab.castor.xml.NodeType.Element);\r
- handler = new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- DataSet target = (DataSet) object;\r
- return target.getAlignment();\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- DataSet target = (DataSet) object;\r
- target.addAlignment( (uk.ac.vamsas.objects.core.Alignment) value);\r
- } catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public void resetValue(Object object) throws IllegalStateException, IllegalArgumentException {\r
- try {\r
- DataSet target = (DataSet) object;\r
- target.removeAllAlignment();\r
- } catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance(java.lang.Object parent) {\r
- return new uk.ac.vamsas.objects.core.Alignment();\r
- }\r
- };\r
- desc.setHandler(handler);\r
- desc.setNameSpaceURI("http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes");\r
- desc.setMultivalued(true);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _alignmentList\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- fieldValidator.setMinOccurs(0);\r
- { //-- local scope\r
+ }\r
+\r
+ public void resetValue(Object object) throws IllegalStateException,\r
+ IllegalArgumentException {\r
+ try {\r
+ DataSet target = (DataSet) object;\r
+ target.removeAllSequenceMapping();\r
+ } catch (java.lang.Exception ex) {\r
+ throw new IllegalStateException(ex.toString());\r
}\r
- desc.setValidator(fieldValidator);\r
- //-- _treeList\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(uk.ac.vamsas.objects.core.Tree.class, "_treeList", "Tree", org.exolab.castor.xml.NodeType.Element);\r
- handler = new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- DataSet target = (DataSet) object;\r
- return target.getTree();\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- DataSet target = (DataSet) object;\r
- target.addTree( (uk.ac.vamsas.objects.core.Tree) value);\r
- } catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public void resetValue(Object object) throws IllegalStateException, IllegalArgumentException {\r
- try {\r
- DataSet target = (DataSet) object;\r
- target.removeAllTree();\r
- } catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance(java.lang.Object parent) {\r
- return new uk.ac.vamsas.objects.core.Tree();\r
- }\r
- };\r
- desc.setHandler(handler);\r
- desc.setNameSpaceURI("http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes");\r
- desc.setMultivalued(true);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _treeList\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- fieldValidator.setMinOccurs(0);\r
- { //-- local scope\r
+ }\r
+\r
+ public java.lang.Object newInstance(java.lang.Object parent) {\r
+ return new uk.ac.vamsas.objects.core.SequenceMapping();\r
+ }\r
+ };\r
+ desc.setHandler(handler);\r
+ desc.setNameSpaceURI("http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes");\r
+ desc.setMultivalued(true);\r
+ addFieldDescriptor(desc);\r
+\r
+ // -- validation code for: _sequenceMappingList\r
+ fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
+ fieldValidator.setMinOccurs(0);\r
+ { // -- local scope\r
+ }\r
+ desc.setValidator(fieldValidator);\r
+ // -- _dataSetAnnotationsList\r
+ desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(\r
+ uk.ac.vamsas.objects.core.DataSetAnnotations.class,\r
+ "_dataSetAnnotationsList", "DataSetAnnotations",\r
+ org.exolab.castor.xml.NodeType.Element);\r
+ handler = new org.exolab.castor.xml.XMLFieldHandler() {\r
+ public java.lang.Object getValue(java.lang.Object object)\r
+ throws IllegalStateException {\r
+ DataSet target = (DataSet) object;\r
+ return target.getDataSetAnnotations();\r
+ }\r
+\r
+ public void setValue(java.lang.Object object, java.lang.Object value)\r
+ throws IllegalStateException, IllegalArgumentException {\r
+ try {\r
+ DataSet target = (DataSet) object;\r
+ target\r
+ .addDataSetAnnotations((uk.ac.vamsas.objects.core.DataSetAnnotations) value);\r
+ } catch (java.lang.Exception ex) {\r
+ throw new IllegalStateException(ex.toString());\r
}\r
- desc.setValidator(fieldValidator);\r
- //-- _provenance\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(uk.ac.vamsas.objects.core.Provenance.class, "_provenance", "Provenance", org.exolab.castor.xml.NodeType.Element);\r
- handler = new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- DataSet target = (DataSet) object;\r
- return target.getProvenance();\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- DataSet target = (DataSet) object;\r
- target.setProvenance( (uk.ac.vamsas.objects.core.Provenance) value);\r
- } catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance(java.lang.Object parent) {\r
- return new uk.ac.vamsas.objects.core.Provenance();\r
- }\r
- };\r
- desc.setHandler(handler);\r
- desc.setNameSpaceURI("http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes");\r
- desc.setRequired(true);\r
- desc.setMultivalued(false);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _provenance\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- fieldValidator.setMinOccurs(1);\r
- { //-- local scope\r
+ }\r
+\r
+ public void resetValue(Object object) throws IllegalStateException,\r
+ IllegalArgumentException {\r
+ try {\r
+ DataSet target = (DataSet) object;\r
+ target.removeAllDataSetAnnotations();\r
+ } catch (java.lang.Exception ex) {\r
+ throw new IllegalStateException(ex.toString());\r
}\r
- desc.setValidator(fieldValidator);\r
+ }\r
+\r
+ public java.lang.Object newInstance(java.lang.Object parent) {\r
+ return new uk.ac.vamsas.objects.core.DataSetAnnotations();\r
+ }\r
+ };\r
+ desc.setHandler(handler);\r
+ desc.setNameSpaceURI("http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes");\r
+ desc.setMultivalued(true);\r
+ addFieldDescriptor(desc);\r
+\r
+ // -- validation code for: _dataSetAnnotationsList\r
+ fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
+ fieldValidator.setMinOccurs(0);\r
+ { // -- local scope\r
}\r
+ desc.setValidator(fieldValidator);\r
+ // -- _alignmentList\r
+ desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(\r
+ uk.ac.vamsas.objects.core.Alignment.class, "_alignmentList",\r
+ "Alignment", org.exolab.castor.xml.NodeType.Element);\r
+ handler = new org.exolab.castor.xml.XMLFieldHandler() {\r
+ public java.lang.Object getValue(java.lang.Object object)\r
+ throws IllegalStateException {\r
+ DataSet target = (DataSet) object;\r
+ return target.getAlignment();\r
+ }\r
\r
+ public void setValue(java.lang.Object object, java.lang.Object value)\r
+ throws IllegalStateException, IllegalArgumentException {\r
+ try {\r
+ DataSet target = (DataSet) object;\r
+ target.addAlignment((uk.ac.vamsas.objects.core.Alignment) value);\r
+ } catch (java.lang.Exception ex) {\r
+ throw new IllegalStateException(ex.toString());\r
+ }\r
+ }\r
\r
- //-----------/\r
- //- Methods -/\r
- //-----------/\r
+ public void resetValue(Object object) throws IllegalStateException,\r
+ IllegalArgumentException {\r
+ try {\r
+ DataSet target = (DataSet) object;\r
+ target.removeAllAlignment();\r
+ } catch (java.lang.Exception ex) {\r
+ throw new IllegalStateException(ex.toString());\r
+ }\r
+ }\r
\r
- /**\r
- * Method getAccessMode.\r
- * \r
- * @return the access mode specified for this class.\r
- */\r
- public org.exolab.castor.mapping.AccessMode getAccessMode(\r
- ) {\r
- return null;\r
- }\r
+ public java.lang.Object newInstance(java.lang.Object parent) {\r
+ return new uk.ac.vamsas.objects.core.Alignment();\r
+ }\r
+ };\r
+ desc.setHandler(handler);\r
+ desc.setNameSpaceURI("http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes");\r
+ desc.setMultivalued(true);\r
+ addFieldDescriptor(desc);\r
\r
- /**\r
- * Method getIdentity.\r
- * \r
- * @return the identity field, null if this class has no\r
- * identity.\r
- */\r
- public org.exolab.castor.mapping.FieldDescriptor getIdentity(\r
- ) {\r
- return super.getIdentity();\r
+ // -- validation code for: _alignmentList\r
+ fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
+ fieldValidator.setMinOccurs(0);\r
+ { // -- local scope\r
}\r
+ desc.setValidator(fieldValidator);\r
+ // -- _treeList\r
+ desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(\r
+ uk.ac.vamsas.objects.core.Tree.class, "_treeList", "Tree",\r
+ org.exolab.castor.xml.NodeType.Element);\r
+ handler = new org.exolab.castor.xml.XMLFieldHandler() {\r
+ public java.lang.Object getValue(java.lang.Object object)\r
+ throws IllegalStateException {\r
+ DataSet target = (DataSet) object;\r
+ return target.getTree();\r
+ }\r
\r
- /**\r
- * Method getJavaClass.\r
- * \r
- * @return the Java class represented by this descriptor.\r
- */\r
- public java.lang.Class getJavaClass(\r
- ) {\r
- return uk.ac.vamsas.objects.core.DataSet.class;\r
- }\r
+ public void setValue(java.lang.Object object, java.lang.Object value)\r
+ throws IllegalStateException, IllegalArgumentException {\r
+ try {\r
+ DataSet target = (DataSet) object;\r
+ target.addTree((uk.ac.vamsas.objects.core.Tree) value);\r
+ } catch (java.lang.Exception ex) {\r
+ throw new IllegalStateException(ex.toString());\r
+ }\r
+ }\r
\r
- /**\r
- * Method getNameSpacePrefix.\r
- * \r
- * @return the namespace prefix to use when marshaling as XML.\r
- */\r
- public java.lang.String getNameSpacePrefix(\r
- ) {\r
- return _nsPrefix;\r
- }\r
+ public void resetValue(Object object) throws IllegalStateException,\r
+ IllegalArgumentException {\r
+ try {\r
+ DataSet target = (DataSet) object;\r
+ target.removeAllTree();\r
+ } catch (java.lang.Exception ex) {\r
+ throw new IllegalStateException(ex.toString());\r
+ }\r
+ }\r
\r
- /**\r
- * Method getNameSpaceURI.\r
- * \r
- * @return the namespace URI used when marshaling and\r
- * unmarshaling as XML.\r
- */\r
- public java.lang.String getNameSpaceURI(\r
- ) {\r
- return _nsURI;\r
- }\r
+ public java.lang.Object newInstance(java.lang.Object parent) {\r
+ return new uk.ac.vamsas.objects.core.Tree();\r
+ }\r
+ };\r
+ desc.setHandler(handler);\r
+ desc.setNameSpaceURI("http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes");\r
+ desc.setMultivalued(true);\r
+ addFieldDescriptor(desc);\r
\r
- /**\r
- * Method getValidator.\r
- * \r
- * @return a specific validator for the class described by this\r
- * ClassDescriptor.\r
- */\r
- public org.exolab.castor.xml.TypeValidator getValidator(\r
- ) {\r
- return this;\r
+ // -- validation code for: _treeList\r
+ fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
+ fieldValidator.setMinOccurs(0);\r
+ { // -- local scope\r
}\r
+ desc.setValidator(fieldValidator);\r
+ // -- _provenance\r
+ desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(\r
+ uk.ac.vamsas.objects.core.Provenance.class, "_provenance",\r
+ "Provenance", org.exolab.castor.xml.NodeType.Element);\r
+ handler = new org.exolab.castor.xml.XMLFieldHandler() {\r
+ public java.lang.Object getValue(java.lang.Object object)\r
+ throws IllegalStateException {\r
+ DataSet target = (DataSet) object;\r
+ return target.getProvenance();\r
+ }\r
\r
- /**\r
- * Method getXMLName.\r
- * \r
- * @return the XML Name for the Class being described.\r
- */\r
- public java.lang.String getXMLName(\r
- ) {\r
- return _xmlName;\r
- }\r
+ public void setValue(java.lang.Object object, java.lang.Object value)\r
+ throws IllegalStateException, IllegalArgumentException {\r
+ try {\r
+ DataSet target = (DataSet) object;\r
+ target.setProvenance((uk.ac.vamsas.objects.core.Provenance) value);\r
+ } catch (java.lang.Exception ex) {\r
+ throw new IllegalStateException(ex.toString());\r
+ }\r
+ }\r
+\r
+ public java.lang.Object newInstance(java.lang.Object parent) {\r
+ return new uk.ac.vamsas.objects.core.Provenance();\r
+ }\r
+ };\r
+ desc.setHandler(handler);\r
+ desc.setNameSpaceURI("http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes");\r
+ desc.setRequired(true);\r
+ desc.setMultivalued(false);\r
+ addFieldDescriptor(desc);\r
\r
- /**\r
- * Method isElementDefinition.\r
- * \r
- * @return true if XML schema definition of this Class is that\r
- * of a global\r
- * element or element with anonymous type definition.\r
- */\r
- public boolean isElementDefinition(\r
- ) {\r
- return _elementDefinition;\r
+ // -- validation code for: _provenance\r
+ fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
+ fieldValidator.setMinOccurs(1);\r
+ { // -- local scope\r
}\r
+ desc.setValidator(fieldValidator);\r
+ }\r
+\r
+ // -----------/\r
+ // - Methods -/\r
+ // -----------/\r
+\r
+ /**\r
+ * Method getAccessMode.\r
+ * \r
+ * @return the access mode specified for this class.\r
+ */\r
+ public org.exolab.castor.mapping.AccessMode getAccessMode() {\r
+ return null;\r
+ }\r
+\r
+ /**\r
+ * Method getIdentity.\r
+ * \r
+ * @return the identity field, null if this class has no identity.\r
+ */\r
+ public org.exolab.castor.mapping.FieldDescriptor getIdentity() {\r
+ return super.getIdentity();\r
+ }\r
+\r
+ /**\r
+ * Method getJavaClass.\r
+ * \r
+ * @return the Java class represented by this descriptor.\r
+ */\r
+ public java.lang.Class getJavaClass() {\r
+ return uk.ac.vamsas.objects.core.DataSet.class;\r
+ }\r
+\r
+ /**\r
+ * Method getNameSpacePrefix.\r
+ * \r
+ * @return the namespace prefix to use when marshaling as XML.\r
+ */\r
+ public java.lang.String getNameSpacePrefix() {\r
+ return _nsPrefix;\r
+ }\r
+\r
+ /**\r
+ * Method getNameSpaceURI.\r
+ * \r
+ * @return the namespace URI used when marshaling and unmarshaling as XML.\r
+ */\r
+ public java.lang.String getNameSpaceURI() {\r
+ return _nsURI;\r
+ }\r
+\r
+ /**\r
+ * Method getValidator.\r
+ * \r
+ * @return a specific validator for the class described by this\r
+ * ClassDescriptor.\r
+ */\r
+ public org.exolab.castor.xml.TypeValidator getValidator() {\r
+ return this;\r
+ }\r
+\r
+ /**\r
+ * Method getXMLName.\r
+ * \r
+ * @return the XML Name for the Class being described.\r
+ */\r
+ public java.lang.String getXMLName() {\r
+ return _xmlName;\r
+ }\r
+\r
+ /**\r
+ * Method isElementDefinition.\r
+ * \r
+ * @return true if XML schema definition of this Class is that of a global\r
+ * element or element with anonymous type definition.\r
+ */\r
+ public boolean isElementDefinition() {\r
+ return _elementDefinition;\r
+ }\r
\r
}\r
git://source.jalview.org / vamsas.git / blobdiff