applied LGPLv3 and source code formatting.
[vamsas.git] / src / uk / ac / vamsas / objects / core / descriptors / DbRefDescriptor.java
index 9f13e4f..eee7f9a 100644 (file)
@@ -1,14 +1,28 @@
 /*\r
- * This class was automatically generated with \r
- * <a href="http://www.castor.org">Castor 1.1</a>, using an XML\r
- * Schema.\r
- * $Id$\r
+ * This file is part of the Vamsas Client version 0.1. \r
+ * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, \r
+ *  Andrew Waterhouse and Dominik Lindner.\r
+ * \r
+ * Earlier versions have also been incorporated into Jalview version 2.4 \r
+ * since 2008, and TOPALi version 2 since 2007.\r
+ * \r
+ * The Vamsas Client is free software: you can redistribute it and/or modify\r
+ * it under the terms of the GNU Lesser General Public License as published by\r
+ * the Free Software Foundation, either version 3 of the License, or\r
+ * (at your option) any later version.\r
+ *  \r
+ * The Vamsas Client is distributed in the hope that it will be useful,\r
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of\r
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the\r
+ * GNU Lesser General Public License for more details.\r
+ * \r
+ * You should have received a copy of the GNU Lesser General Public License\r
+ * along with the Vamsas Client.  If not, see <http://www.gnu.org/licenses/>.\r
  */\r
-\r
 package uk.ac.vamsas.objects.core.descriptors;\r
 \r
-  //---------------------------------/\r
- //- Imported classes and packages -/\r
+//---------------------------------/\r
+//- Imported classes and packages -/\r
 //---------------------------------/\r
 \r
 import uk.ac.vamsas.objects.core.DbRef;\r
@@ -18,422 +32,429 @@ import uk.ac.vamsas.objects.core.DbRef;
  * \r
  * @version $Revision$ $Date$\r
  */\r
-public class DbRefDescriptor extends org.exolab.castor.xml.util.XMLClassDescriptorImpl {\r
-\r
-\r
-      //--------------------------/\r
-     //- Class/Member Variables -/\r
-    //--------------------------/\r
-\r
-    /**\r
-     * Field _elementDefinition.\r
-     */\r
-    private boolean _elementDefinition;\r
-\r
-    /**\r
-     * Field _nsPrefix.\r
-     */\r
-    private java.lang.String _nsPrefix;\r
-\r
-    /**\r
-     * Field _nsURI.\r
-     */\r
-    private java.lang.String _nsURI;\r
-\r
-    /**\r
-     * Field _xmlName.\r
-     */\r
-    private java.lang.String _xmlName;\r
-\r
-\r
-      //----------------/\r
-     //- Constructors -/\r
-    //----------------/\r
-\r
-    public DbRefDescriptor() {\r
-        super();\r
-        _nsURI = "http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes";\r
-        _xmlName = "dbRef";\r
-        _elementDefinition = true;\r
-        \r
-        //-- set grouping compositor\r
-        setCompositorAsSequence();\r
-        org.exolab.castor.xml.util.XMLFieldDescriptorImpl  desc           = null;\r
-        org.exolab.castor.mapping.FieldHandler             handler        = null;\r
-        org.exolab.castor.xml.FieldValidator               fieldValidator = null;\r
-        //-- initialize attribute descriptors\r
-        \r
-        //-- _source\r
-        desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.String.class, "_source", "source", org.exolab.castor.xml.NodeType.Attribute);\r
-        desc.setImmutable(true);\r
-        handler = new org.exolab.castor.xml.XMLFieldHandler() {\r
-            public java.lang.Object getValue( java.lang.Object object ) \r
-                throws IllegalStateException\r
-            {\r
-                DbRef target = (DbRef) object;\r
-                return target.getSource();\r
-            }\r
-            public void setValue( java.lang.Object object, java.lang.Object value) \r
-                throws IllegalStateException, IllegalArgumentException\r
-            {\r
-                try {\r
-                    DbRef target = (DbRef) object;\r
-                    target.setSource( (java.lang.String) value);\r
-                } catch (java.lang.Exception ex) {\r
-                    throw new IllegalStateException(ex.toString());\r
-                }\r
-            }\r
-            public java.lang.Object newInstance(java.lang.Object parent) {\r
-                return null;\r
-            }\r
-        };\r
-        desc.setHandler(handler);\r
-        desc.setRequired(true);\r
-        desc.setMultivalued(false);\r
-        addFieldDescriptor(desc);\r
-        \r
-        //-- validation code for: _source\r
-        fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
-        fieldValidator.setMinOccurs(1);\r
-        { //-- local scope\r
-            org.exolab.castor.xml.validators.StringValidator typeValidator;\r
-            typeValidator = new org.exolab.castor.xml.validators.StringValidator();\r
-            fieldValidator.setValidator(typeValidator);\r
-            typeValidator.setWhiteSpace("preserve");\r
-        }\r
-        desc.setValidator(fieldValidator);\r
-        //-- _version\r
-        desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.String.class, "_version", "version", org.exolab.castor.xml.NodeType.Attribute);\r
-        desc.setImmutable(true);\r
-        handler = new org.exolab.castor.xml.XMLFieldHandler() {\r
-            public java.lang.Object getValue( java.lang.Object object ) \r
-                throws IllegalStateException\r
-            {\r
-                DbRef target = (DbRef) object;\r
-                return target.getVersion();\r
-            }\r
-            public void setValue( java.lang.Object object, java.lang.Object value) \r
-                throws IllegalStateException, IllegalArgumentException\r
-            {\r
-                try {\r
-                    DbRef target = (DbRef) object;\r
-                    target.setVersion( (java.lang.String) value);\r
-                } catch (java.lang.Exception ex) {\r
-                    throw new IllegalStateException(ex.toString());\r
-                }\r
-            }\r
-            public java.lang.Object newInstance(java.lang.Object parent) {\r
-                return null;\r
-            }\r
-        };\r
-        desc.setHandler(handler);\r
-        desc.setRequired(true);\r
-        desc.setMultivalued(false);\r
-        addFieldDescriptor(desc);\r
-        \r
-        //-- validation code for: _version\r
-        fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
-        fieldValidator.setMinOccurs(1);\r
-        { //-- local scope\r
-            org.exolab.castor.xml.validators.StringValidator typeValidator;\r
-            typeValidator = new org.exolab.castor.xml.validators.StringValidator();\r
-            fieldValidator.setValidator(typeValidator);\r
-            typeValidator.setWhiteSpace("preserve");\r
+public class DbRefDescriptor extends\r
+    org.exolab.castor.xml.util.XMLClassDescriptorImpl {\r
+\r
+  // --------------------------/\r
+  // - Class/Member Variables -/\r
+  // --------------------------/\r
+\r
+  /**\r
+   * Field _elementDefinition.\r
+   */\r
+  private boolean _elementDefinition;\r
+\r
+  /**\r
+   * Field _nsPrefix.\r
+   */\r
+  private java.lang.String _nsPrefix;\r
+\r
+  /**\r
+   * Field _nsURI.\r
+   */\r
+  private java.lang.String _nsURI;\r
+\r
+  /**\r
+   * Field _xmlName.\r
+   */\r
+  private java.lang.String _xmlName;\r
+\r
+  // ----------------/\r
+  // - Constructors -/\r
+  // ----------------/\r
+\r
+  public DbRefDescriptor() {\r
+    super();\r
+    _nsURI = "http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes";\r
+    _xmlName = "dbRef";\r
+    _elementDefinition = true;\r
+\r
+    // -- set grouping compositor\r
+    setCompositorAsSequence();\r
+    org.exolab.castor.xml.util.XMLFieldDescriptorImpl desc = null;\r
+    org.exolab.castor.mapping.FieldHandler handler = null;\r
+    org.exolab.castor.xml.FieldValidator fieldValidator = null;\r
+    // -- initialize attribute descriptors\r
+\r
+    // -- _source\r
+    desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(\r
+        java.lang.String.class, "_source", "source",\r
+        org.exolab.castor.xml.NodeType.Attribute);\r
+    desc.setImmutable(true);\r
+    handler = new org.exolab.castor.xml.XMLFieldHandler() {\r
+      public java.lang.Object getValue(java.lang.Object object)\r
+          throws IllegalStateException {\r
+        DbRef target = (DbRef) object;\r
+        return target.getSource();\r
+      }\r
+\r
+      public void setValue(java.lang.Object object, java.lang.Object value)\r
+          throws IllegalStateException, IllegalArgumentException {\r
+        try {\r
+          DbRef target = (DbRef) object;\r
+          target.setSource((java.lang.String) value);\r
+        } catch (java.lang.Exception ex) {\r
+          throw new IllegalStateException(ex.toString());\r
         }\r
-        desc.setValidator(fieldValidator);\r
-        //-- _accessionId\r
-        desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.String.class, "_accessionId", "accessionId", org.exolab.castor.xml.NodeType.Attribute);\r
-        desc.setImmutable(true);\r
-        handler = new org.exolab.castor.xml.XMLFieldHandler() {\r
-            public java.lang.Object getValue( java.lang.Object object ) \r
-                throws IllegalStateException\r
-            {\r
-                DbRef target = (DbRef) object;\r
-                return target.getAccessionId();\r
-            }\r
-            public void setValue( java.lang.Object object, java.lang.Object value) \r
-                throws IllegalStateException, IllegalArgumentException\r
-            {\r
-                try {\r
-                    DbRef target = (DbRef) object;\r
-                    target.setAccessionId( (java.lang.String) value);\r
-                } catch (java.lang.Exception ex) {\r
-                    throw new IllegalStateException(ex.toString());\r
-                }\r
-            }\r
-            public java.lang.Object newInstance(java.lang.Object parent) {\r
-                return null;\r
-            }\r
-        };\r
-        desc.setHandler(handler);\r
-        desc.setRequired(true);\r
-        desc.setMultivalued(false);\r
-        addFieldDescriptor(desc);\r
-        \r
-        //-- validation code for: _accessionId\r
-        fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
-        fieldValidator.setMinOccurs(1);\r
-        { //-- local scope\r
-            org.exolab.castor.xml.validators.StringValidator typeValidator;\r
-            typeValidator = new org.exolab.castor.xml.validators.StringValidator();\r
-            fieldValidator.setValidator(typeValidator);\r
-            typeValidator.setWhiteSpace("preserve");\r
+      }\r
+\r
+      public java.lang.Object newInstance(java.lang.Object parent) {\r
+        return null;\r
+      }\r
+    };\r
+    desc.setHandler(handler);\r
+    desc.setRequired(true);\r
+    desc.setMultivalued(false);\r
+    addFieldDescriptor(desc);\r
+\r
+    // -- validation code for: _source\r
+    fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
+    fieldValidator.setMinOccurs(1);\r
+    { // -- local scope\r
+      org.exolab.castor.xml.validators.StringValidator typeValidator;\r
+      typeValidator = new org.exolab.castor.xml.validators.StringValidator();\r
+      fieldValidator.setValidator(typeValidator);\r
+      typeValidator.setWhiteSpace("preserve");\r
+    }\r
+    desc.setValidator(fieldValidator);\r
+    // -- _version\r
+    desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(\r
+        java.lang.String.class, "_version", "version",\r
+        org.exolab.castor.xml.NodeType.Attribute);\r
+    desc.setImmutable(true);\r
+    handler = new org.exolab.castor.xml.XMLFieldHandler() {\r
+      public java.lang.Object getValue(java.lang.Object object)\r
+          throws IllegalStateException {\r
+        DbRef target = (DbRef) object;\r
+        return target.getVersion();\r
+      }\r
+\r
+      public void setValue(java.lang.Object object, java.lang.Object value)\r
+          throws IllegalStateException, IllegalArgumentException {\r
+        try {\r
+          DbRef target = (DbRef) object;\r
+          target.setVersion((java.lang.String) value);\r
+        } catch (java.lang.Exception ex) {\r
+          throw new IllegalStateException(ex.toString());\r
         }\r
-        desc.setValidator(fieldValidator);\r
-        //-- _id\r
-        desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.String.class, "_id", "id", org.exolab.castor.xml.NodeType.Attribute);\r
-        super.setIdentity(desc);\r
-        handler = new org.exolab.castor.xml.XMLFieldHandler() {\r
-            public java.lang.Object getValue( java.lang.Object object ) \r
-                throws IllegalStateException\r
-            {\r
-                DbRef target = (DbRef) object;\r
-                return target.getId();\r
-            }\r
-            public void setValue( java.lang.Object object, java.lang.Object value) \r
-                throws IllegalStateException, IllegalArgumentException\r
-            {\r
-                try {\r
-                    DbRef target = (DbRef) object;\r
-                    target.setId( (java.lang.String) value);\r
-                } catch (java.lang.Exception ex) {\r
-                    throw new IllegalStateException(ex.toString());\r
-                }\r
-            }\r
-            public java.lang.Object newInstance(java.lang.Object parent) {\r
-                return new java.lang.String();\r
-            }\r
-        };\r
-        desc.setHandler(handler);\r
-        desc.setMultivalued(false);\r
-        addFieldDescriptor(desc);\r
-        \r
-        //-- validation code for: _id\r
-        fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
-        { //-- local scope\r
-            org.exolab.castor.xml.validators.IdValidator typeValidator;\r
-            typeValidator = new org.exolab.castor.xml.validators.IdValidator();\r
-            fieldValidator.setValidator(typeValidator);\r
+      }\r
+\r
+      public java.lang.Object newInstance(java.lang.Object parent) {\r
+        return null;\r
+      }\r
+    };\r
+    desc.setHandler(handler);\r
+    desc.setRequired(true);\r
+    desc.setMultivalued(false);\r
+    addFieldDescriptor(desc);\r
+\r
+    // -- validation code for: _version\r
+    fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
+    fieldValidator.setMinOccurs(1);\r
+    { // -- local scope\r
+      org.exolab.castor.xml.validators.StringValidator typeValidator;\r
+      typeValidator = new org.exolab.castor.xml.validators.StringValidator();\r
+      fieldValidator.setValidator(typeValidator);\r
+      typeValidator.setWhiteSpace("preserve");\r
+    }\r
+    desc.setValidator(fieldValidator);\r
+    // -- _accessionId\r
+    desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(\r
+        java.lang.String.class, "_accessionId", "accessionId",\r
+        org.exolab.castor.xml.NodeType.Attribute);\r
+    desc.setImmutable(true);\r
+    handler = new org.exolab.castor.xml.XMLFieldHandler() {\r
+      public java.lang.Object getValue(java.lang.Object object)\r
+          throws IllegalStateException {\r
+        DbRef target = (DbRef) object;\r
+        return target.getAccessionId();\r
+      }\r
+\r
+      public void setValue(java.lang.Object object, java.lang.Object value)\r
+          throws IllegalStateException, IllegalArgumentException {\r
+        try {\r
+          DbRef target = (DbRef) object;\r
+          target.setAccessionId((java.lang.String) value);\r
+        } catch (java.lang.Exception ex) {\r
+          throw new IllegalStateException(ex.toString());\r
         }\r
-        desc.setValidator(fieldValidator);\r
-        //-- initialize element descriptors\r
-        \r
-        //-- _mapList\r
-        desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(uk.ac.vamsas.objects.core.Map.class, "_mapList", "map", org.exolab.castor.xml.NodeType.Element);\r
-        handler = new org.exolab.castor.xml.XMLFieldHandler() {\r
-            public java.lang.Object getValue( java.lang.Object object ) \r
-                throws IllegalStateException\r
-            {\r
-                DbRef target = (DbRef) object;\r
-                return target.getMap();\r
-            }\r
-            public void setValue( java.lang.Object object, java.lang.Object value) \r
-                throws IllegalStateException, IllegalArgumentException\r
-            {\r
-                try {\r
-                    DbRef target = (DbRef) object;\r
-                    target.addMap( (uk.ac.vamsas.objects.core.Map) value);\r
-                } catch (java.lang.Exception ex) {\r
-                    throw new IllegalStateException(ex.toString());\r
-                }\r
-            }\r
-            public void resetValue(Object object) throws IllegalStateException, IllegalArgumentException {\r
-                try {\r
-                    DbRef target = (DbRef) object;\r
-                    target.removeAllMap();\r
-                } catch (java.lang.Exception ex) {\r
-                    throw new IllegalStateException(ex.toString());\r
-                }\r
-            }\r
-            public java.lang.Object newInstance(java.lang.Object parent) {\r
-                return new uk.ac.vamsas.objects.core.Map();\r
-            }\r
-        };\r
-        desc.setHandler(handler);\r
-        desc.setNameSpaceURI("http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes");\r
-        desc.setMultivalued(true);\r
-        addFieldDescriptor(desc);\r
-        \r
-        //-- validation code for: _mapList\r
-        fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
-        fieldValidator.setMinOccurs(0);\r
-        { //-- local scope\r
+      }\r
+\r
+      public java.lang.Object newInstance(java.lang.Object parent) {\r
+        return null;\r
+      }\r
+    };\r
+    desc.setHandler(handler);\r
+    desc.setRequired(true);\r
+    desc.setMultivalued(false);\r
+    addFieldDescriptor(desc);\r
+\r
+    // -- validation code for: _accessionId\r
+    fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
+    fieldValidator.setMinOccurs(1);\r
+    { // -- local scope\r
+      org.exolab.castor.xml.validators.StringValidator typeValidator;\r
+      typeValidator = new org.exolab.castor.xml.validators.StringValidator();\r
+      fieldValidator.setValidator(typeValidator);\r
+      typeValidator.setWhiteSpace("preserve");\r
+    }\r
+    desc.setValidator(fieldValidator);\r
+    // -- _id\r
+    desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(\r
+        java.lang.String.class, "_id", "id",\r
+        org.exolab.castor.xml.NodeType.Attribute);\r
+    super.setIdentity(desc);\r
+    handler = new org.exolab.castor.xml.XMLFieldHandler() {\r
+      public java.lang.Object getValue(java.lang.Object object)\r
+          throws IllegalStateException {\r
+        DbRef target = (DbRef) object;\r
+        return target.getId();\r
+      }\r
+\r
+      public void setValue(java.lang.Object object, java.lang.Object value)\r
+          throws IllegalStateException, IllegalArgumentException {\r
+        try {\r
+          DbRef target = (DbRef) object;\r
+          target.setId((java.lang.String) value);\r
+        } catch (java.lang.Exception ex) {\r
+          throw new IllegalStateException(ex.toString());\r
         }\r
-        desc.setValidator(fieldValidator);\r
-        //-- _linkList\r
-        desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(uk.ac.vamsas.objects.core.Link.class, "_linkList", "link", org.exolab.castor.xml.NodeType.Element);\r
-        handler = new org.exolab.castor.xml.XMLFieldHandler() {\r
-            public java.lang.Object getValue( java.lang.Object object ) \r
-                throws IllegalStateException\r
-            {\r
-                DbRef target = (DbRef) object;\r
-                return target.getLink();\r
-            }\r
-            public void setValue( java.lang.Object object, java.lang.Object value) \r
-                throws IllegalStateException, IllegalArgumentException\r
-            {\r
-                try {\r
-                    DbRef target = (DbRef) object;\r
-                    target.addLink( (uk.ac.vamsas.objects.core.Link) value);\r
-                } catch (java.lang.Exception ex) {\r
-                    throw new IllegalStateException(ex.toString());\r
-                }\r
-            }\r
-            public void resetValue(Object object) throws IllegalStateException, IllegalArgumentException {\r
-                try {\r
-                    DbRef target = (DbRef) object;\r
-                    target.removeAllLink();\r
-                } catch (java.lang.Exception ex) {\r
-                    throw new IllegalStateException(ex.toString());\r
-                }\r
-            }\r
-            public java.lang.Object newInstance(java.lang.Object parent) {\r
-                return new uk.ac.vamsas.objects.core.Link();\r
-            }\r
-        };\r
-        desc.setHandler(handler);\r
-        desc.setNameSpaceURI("http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes");\r
-        desc.setMultivalued(true);\r
-        addFieldDescriptor(desc);\r
-        \r
-        //-- validation code for: _linkList\r
-        fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
-        fieldValidator.setMinOccurs(0);\r
-        { //-- local scope\r
+      }\r
+\r
+      public java.lang.Object newInstance(java.lang.Object parent) {\r
+        return new java.lang.String();\r
+      }\r
+    };\r
+    desc.setHandler(handler);\r
+    desc.setMultivalued(false);\r
+    addFieldDescriptor(desc);\r
+\r
+    // -- validation code for: _id\r
+    fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
+    { // -- local scope\r
+      org.exolab.castor.xml.validators.IdValidator typeValidator;\r
+      typeValidator = new org.exolab.castor.xml.validators.IdValidator();\r
+      fieldValidator.setValidator(typeValidator);\r
+    }\r
+    desc.setValidator(fieldValidator);\r
+    // -- initialize element descriptors\r
+\r
+    // -- _mapList\r
+    desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(\r
+        uk.ac.vamsas.objects.core.Map.class, "_mapList", "map",\r
+        org.exolab.castor.xml.NodeType.Element);\r
+    handler = new org.exolab.castor.xml.XMLFieldHandler() {\r
+      public java.lang.Object getValue(java.lang.Object object)\r
+          throws IllegalStateException {\r
+        DbRef target = (DbRef) object;\r
+        return target.getMap();\r
+      }\r
+\r
+      public void setValue(java.lang.Object object, java.lang.Object value)\r
+          throws IllegalStateException, IllegalArgumentException {\r
+        try {\r
+          DbRef target = (DbRef) object;\r
+          target.addMap((uk.ac.vamsas.objects.core.Map) value);\r
+        } catch (java.lang.Exception ex) {\r
+          throw new IllegalStateException(ex.toString());\r
         }\r
-        desc.setValidator(fieldValidator);\r
-        //-- _propertyList\r
-        desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(uk.ac.vamsas.objects.core.Property.class, "_propertyList", "property", org.exolab.castor.xml.NodeType.Element);\r
-        handler = new org.exolab.castor.xml.XMLFieldHandler() {\r
-            public java.lang.Object getValue( java.lang.Object object ) \r
-                throws IllegalStateException\r
-            {\r
-                DbRef target = (DbRef) object;\r
-                return target.getProperty();\r
-            }\r
-            public void setValue( java.lang.Object object, java.lang.Object value) \r
-                throws IllegalStateException, IllegalArgumentException\r
-            {\r
-                try {\r
-                    DbRef target = (DbRef) object;\r
-                    target.addProperty( (uk.ac.vamsas.objects.core.Property) value);\r
-                } catch (java.lang.Exception ex) {\r
-                    throw new IllegalStateException(ex.toString());\r
-                }\r
-            }\r
-            public void resetValue(Object object) throws IllegalStateException, IllegalArgumentException {\r
-                try {\r
-                    DbRef target = (DbRef) object;\r
-                    target.removeAllProperty();\r
-                } catch (java.lang.Exception ex) {\r
-                    throw new IllegalStateException(ex.toString());\r
-                }\r
-            }\r
-            public java.lang.Object newInstance(java.lang.Object parent) {\r
-                return new uk.ac.vamsas.objects.core.Property();\r
-            }\r
-        };\r
-        desc.setHandler(handler);\r
-        desc.setNameSpaceURI("http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes");\r
-        desc.setMultivalued(true);\r
-        addFieldDescriptor(desc);\r
-        \r
-        //-- validation code for: _propertyList\r
-        fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
-        fieldValidator.setMinOccurs(0);\r
-        { //-- local scope\r
+      }\r
+\r
+      public void resetValue(Object object) throws IllegalStateException,\r
+          IllegalArgumentException {\r
+        try {\r
+          DbRef target = (DbRef) object;\r
+          target.removeAllMap();\r
+        } catch (java.lang.Exception ex) {\r
+          throw new IllegalStateException(ex.toString());\r
         }\r
-        desc.setValidator(fieldValidator);\r
+      }\r
+\r
+      public java.lang.Object newInstance(java.lang.Object parent) {\r
+        return new uk.ac.vamsas.objects.core.Map();\r
+      }\r
+    };\r
+    desc.setHandler(handler);\r
+    desc.setNameSpaceURI("http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes");\r
+    desc.setMultivalued(true);\r
+    addFieldDescriptor(desc);\r
+\r
+    // -- validation code for: _mapList\r
+    fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
+    fieldValidator.setMinOccurs(0);\r
+    { // -- local scope\r
     }\r
+    desc.setValidator(fieldValidator);\r
+    // -- _linkList\r
+    desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(\r
+        uk.ac.vamsas.objects.core.Link.class, "_linkList", "link",\r
+        org.exolab.castor.xml.NodeType.Element);\r
+    handler = new org.exolab.castor.xml.XMLFieldHandler() {\r
+      public java.lang.Object getValue(java.lang.Object object)\r
+          throws IllegalStateException {\r
+        DbRef target = (DbRef) object;\r
+        return target.getLink();\r
+      }\r
 \r
+      public void setValue(java.lang.Object object, java.lang.Object value)\r
+          throws IllegalStateException, IllegalArgumentException {\r
+        try {\r
+          DbRef target = (DbRef) object;\r
+          target.addLink((uk.ac.vamsas.objects.core.Link) value);\r
+        } catch (java.lang.Exception ex) {\r
+          throw new IllegalStateException(ex.toString());\r
+        }\r
+      }\r
 \r
-      //-----------/\r
-     //- Methods -/\r
-    //-----------/\r
+      public void resetValue(Object object) throws IllegalStateException,\r
+          IllegalArgumentException {\r
+        try {\r
+          DbRef target = (DbRef) object;\r
+          target.removeAllLink();\r
+        } catch (java.lang.Exception ex) {\r
+          throw new IllegalStateException(ex.toString());\r
+        }\r
+      }\r
 \r
-    /**\r
-     * Method getAccessMode.\r
-     * \r
-     * @return the access mode specified for this class.\r
-     */\r
-    public org.exolab.castor.mapping.AccessMode getAccessMode(\r
-    ) {\r
-        return null;\r
-    }\r
+      public java.lang.Object newInstance(java.lang.Object parent) {\r
+        return new uk.ac.vamsas.objects.core.Link();\r
+      }\r
+    };\r
+    desc.setHandler(handler);\r
+    desc.setNameSpaceURI("http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes");\r
+    desc.setMultivalued(true);\r
+    addFieldDescriptor(desc);\r
 \r
-    /**\r
-     * Method getIdentity.\r
-     * \r
-     * @return the identity field, null if this class has no\r
-     * identity.\r
-     */\r
-    public org.exolab.castor.mapping.FieldDescriptor getIdentity(\r
-    ) {\r
-        return super.getIdentity();\r
+    // -- validation code for: _linkList\r
+    fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
+    fieldValidator.setMinOccurs(0);\r
+    { // -- local scope\r
     }\r
+    desc.setValidator(fieldValidator);\r
+    // -- _propertyList\r
+    desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(\r
+        uk.ac.vamsas.objects.core.Property.class, "_propertyList", "property",\r
+        org.exolab.castor.xml.NodeType.Element);\r
+    handler = new org.exolab.castor.xml.XMLFieldHandler() {\r
+      public java.lang.Object getValue(java.lang.Object object)\r
+          throws IllegalStateException {\r
+        DbRef target = (DbRef) object;\r
+        return target.getProperty();\r
+      }\r
 \r
-    /**\r
-     * Method getJavaClass.\r
-     * \r
-     * @return the Java class represented by this descriptor.\r
-     */\r
-    public java.lang.Class getJavaClass(\r
-    ) {\r
-        return uk.ac.vamsas.objects.core.DbRef.class;\r
-    }\r
+      public void setValue(java.lang.Object object, java.lang.Object value)\r
+          throws IllegalStateException, IllegalArgumentException {\r
+        try {\r
+          DbRef target = (DbRef) object;\r
+          target.addProperty((uk.ac.vamsas.objects.core.Property) value);\r
+        } catch (java.lang.Exception ex) {\r
+          throw new IllegalStateException(ex.toString());\r
+        }\r
+      }\r
 \r
-    /**\r
-     * Method getNameSpacePrefix.\r
-     * \r
-     * @return the namespace prefix to use when marshaling as XML.\r
-     */\r
-    public java.lang.String getNameSpacePrefix(\r
-    ) {\r
-        return _nsPrefix;\r
-    }\r
+      public void resetValue(Object object) throws IllegalStateException,\r
+          IllegalArgumentException {\r
+        try {\r
+          DbRef target = (DbRef) object;\r
+          target.removeAllProperty();\r
+        } catch (java.lang.Exception ex) {\r
+          throw new IllegalStateException(ex.toString());\r
+        }\r
+      }\r
 \r
-    /**\r
-     * Method getNameSpaceURI.\r
-     * \r
-     * @return the namespace URI used when marshaling and\r
-     * unmarshaling as XML.\r
-     */\r
-    public java.lang.String getNameSpaceURI(\r
-    ) {\r
-        return _nsURI;\r
-    }\r
+      public java.lang.Object newInstance(java.lang.Object parent) {\r
+        return new uk.ac.vamsas.objects.core.Property();\r
+      }\r
+    };\r
+    desc.setHandler(handler);\r
+    desc.setNameSpaceURI("http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes");\r
+    desc.setMultivalued(true);\r
+    addFieldDescriptor(desc);\r
 \r
-    /**\r
-     * Method getValidator.\r
-     * \r
-     * @return a specific validator for the class described by this\r
-     * ClassDescriptor.\r
-     */\r
-    public org.exolab.castor.xml.TypeValidator getValidator(\r
-    ) {\r
-        return this;\r
+    // -- validation code for: _propertyList\r
+    fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
+    fieldValidator.setMinOccurs(0);\r
+    { // -- local scope\r
     }\r
+    desc.setValidator(fieldValidator);\r
+  }\r
 \r
-    /**\r
-     * Method getXMLName.\r
-     * \r
-     * @return the XML Name for the Class being described.\r
-     */\r
-    public java.lang.String getXMLName(\r
-    ) {\r
-        return _xmlName;\r
-    }\r
+  // -----------/\r
+  // - Methods -/\r
+  // -----------/\r
 \r
-    /**\r
-     * Method isElementDefinition.\r
-     * \r
-     * @return true if XML schema definition of this Class is that\r
-     * of a global\r
-     * element or element with anonymous type definition.\r
-     */\r
-    public boolean isElementDefinition(\r
-    ) {\r
-        return _elementDefinition;\r
-    }\r
+  /**\r
+   * Method getAccessMode.\r
+   * \r
+   * @return the access mode specified for this class.\r
+   */\r
+  public org.exolab.castor.mapping.AccessMode getAccessMode() {\r
+    return null;\r
+  }\r
+\r
+  /**\r
+   * Method getIdentity.\r
+   * \r
+   * @return the identity field, null if this class has no identity.\r
+   */\r
+  public org.exolab.castor.mapping.FieldDescriptor getIdentity() {\r
+    return super.getIdentity();\r
+  }\r
+\r
+  /**\r
+   * Method getJavaClass.\r
+   * \r
+   * @return the Java class represented by this descriptor.\r
+   */\r
+  public java.lang.Class getJavaClass() {\r
+    return uk.ac.vamsas.objects.core.DbRef.class;\r
+  }\r
+\r
+  /**\r
+   * Method getNameSpacePrefix.\r
+   * \r
+   * @return the namespace prefix to use when marshaling as XML.\r
+   */\r
+  public java.lang.String getNameSpacePrefix() {\r
+    return _nsPrefix;\r
+  }\r
+\r
+  /**\r
+   * Method getNameSpaceURI.\r
+   * \r
+   * @return the namespace URI used when marshaling and unmarshaling as XML.\r
+   */\r
+  public java.lang.String getNameSpaceURI() {\r
+    return _nsURI;\r
+  }\r
+\r
+  /**\r
+   * Method getValidator.\r
+   * \r
+   * @return a specific validator for the class described by this\r
+   *         ClassDescriptor.\r
+   */\r
+  public org.exolab.castor.xml.TypeValidator getValidator() {\r
+    return this;\r
+  }\r
+\r
+  /**\r
+   * Method getXMLName.\r
+   * \r
+   * @return the XML Name for the Class being described.\r
+   */\r
+  public java.lang.String getXMLName() {\r
+    return _xmlName;\r
+  }\r
+\r
+  /**\r
+   * Method isElementDefinition.\r
+   * \r
+   * @return true if XML schema definition of this Class is that of a global\r
+   *         element or element with anonymous type definition.\r
+   */\r
+  public boolean isElementDefinition() {\r
+    return _elementDefinition;\r
+  }\r
 \r
 }\r