applied LGPLv3 and source code formatting.

[vamsas.git] / src / uk / ac / vamsas / objects / utils / DocumentStuff.java

diff --git a/src/uk/ac/vamsas/objects/utils/DocumentStuff.java b/src/uk/ac/vamsas/objects/utils/DocumentStuff.java
index 01df061..14d764d 100644 (file)
--- a/src/uk/ac/vamsas/objects/utils/DocumentStuff.java
+++ b/src/uk/ac/vamsas/objects/utils/DocumentStuff.java
@@ -1,35 +1,57 @@
-package uk.ac.vamsas.objects.utils;
-
-
-import uk.ac.vamsas.objects.core.*;
-import uk.ac.vamsas.objects.utils.document.VersionEntries;
-
-/**
- * various vamsas-client independent helpers 
- * for creating and manipulating the vamsasDocument Vobject
- * @author jimp
- *
- */
-public class DocumentStuff {
-  public static VamsasDocument newVamsasDocument(VAMSAS root[], String version) {
-    return newVamsasDocument(root, ProvenanceStuff.newProvenance(
-      "AUTO:org.vamsas.DocumentStuff.newVamsasDocument", 
-      "Vamsas Document created"),
-      version);
-  }
-  public static VamsasDocument newVamsasDocument(VAMSAS root[]) {
-    return newVamsasDocument(root, ProvenanceStuff.newProvenance(
-      "AUTO:org.vamsas.DocumentStuff.newVamsasDocument", 
-      "Vamsas Document created"),
-      VersionEntries.latestVersion());
-  }
-  public static VamsasDocument newVamsasDocument(VAMSAS root[], Provenance p, String version) {
-    VamsasDocument doc = new VamsasDocument();
-    for (int r=0; r<root.length; r++) {
-      doc.addVAMSAS(root[r]);
-    }
-    doc.setProvenance(p);
-    doc.setVersion(version);
-    return doc;
-  }
-}
+/*\r
+ * This file is part of the Vamsas Client version 0.1. \r
+ * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, \r
+ *  Andrew Waterhouse and Dominik Lindner.\r
+ * \r
+ * Earlier versions have also been incorporated into Jalview version 2.4 \r
+ * since 2008, and TOPALi version 2 since 2007.\r
+ * \r
+ * The Vamsas Client is free software: you can redistribute it and/or modify\r
+ * it under the terms of the GNU Lesser General Public License as published by\r
+ * the Free Software Foundation, either version 3 of the License, or\r
+ * (at your option) any later version.\r
+ *  \r
+ * The Vamsas Client is distributed in the hope that it will be useful,\r
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of\r
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the\r
+ * GNU Lesser General Public License for more details.\r
+ * \r
+ * You should have received a copy of the GNU Lesser General Public License\r
+ * along with the Vamsas Client.  If not, see <http://www.gnu.org/licenses/>.\r
+ */\r
+package uk.ac.vamsas.objects.utils;\r
+\r
+import uk.ac.vamsas.objects.core.*;\r
+import uk.ac.vamsas.objects.utils.document.VersionEntries;\r
+\r
+/**\r
+ * various vamsas-client independent helpers for creating and manipulating the\r
+ * vamsasDocument Vobject\r
+ * \r
+ * @author jimp\r
+ * \r
+ */\r
+public class DocumentStuff {\r
+  public static VamsasDocument newVamsasDocument(VAMSAS root[], String version) {\r
+    return newVamsasDocument(root, ProvenanceStuff.newProvenance(\r
+        "AUTO:org.vamsas.DocumentStuff.newVamsasDocument",\r
+        "Vamsas Document created"), version);\r
+  }\r
+\r
+  public static VamsasDocument newVamsasDocument(VAMSAS root[]) {\r
+    return newVamsasDocument(root, ProvenanceStuff.newProvenance(\r
+        "AUTO:org.vamsas.DocumentStuff.newVamsasDocument",\r
+        "Vamsas Document created"), VersionEntries.latestVersion());\r
+  }\r
+\r
+  public static VamsasDocument newVamsasDocument(VAMSAS root[], Provenance p,\r
+      String version) {\r
+    VamsasDocument doc = new VamsasDocument();\r
+    for (int r = 0; r < root.length; r++) {\r
+      doc.addVAMSAS(root[r]);\r
+    }\r
+    doc.setProvenance(p);\r
+    doc.setVersion(version);\r
+    return doc;\r
+  }\r
+}\r