applied LGPLv3 and source code formatting.

[vamsas.git] / src / uk / ac / vamsas / objects / utils / ProvenanceStuff.java

diff --git a/src/uk/ac/vamsas/objects/utils/ProvenanceStuff.java b/src/uk/ac/vamsas/objects/utils/ProvenanceStuff.java
index 3c675dc..d6a7d6d 100644 (file)
--- a/src/uk/ac/vamsas/objects/utils/ProvenanceStuff.java
+++ b/src/uk/ac/vamsas/objects/utils/ProvenanceStuff.java
@@ -1,46 +1,72 @@
-package uk.ac.vamsas.objects.utils;
-
-import java.util.Date;
-
-import org.apache.commons.logging.Log;
-import org.apache.commons.logging.LogFactory;
-
-import uk.ac.vamsas.objects.core.Entry;
-import uk.ac.vamsas.objects.core.Provenance;
-
-public class ProvenanceStuff {
-
-  /**
-   * stuff for making and doing things with provenance objects.
-   */
-  static Log log = LogFactory.getLog(ProvenanceStuff.class);
-
-  /**
-   * @param app TODO
-   * @param action
-   *          text for action entry
-   * @return new Provenance entry for ArchiveWriter created docs.
-   * TODO: Verify and move to SimpleClient class for provenance handling
-   */
-  public static Entry newProvenanceEntry(String app, String user, String action) { 
-    log.debug("Adding ProvenanceEntry("+user+","+action+")");
-    Entry e = new Entry();
-    e.setApp(app);
-    e.setAction(action);
-    e.setUser(user);
-    e.setDate(new Date());
-    return e;
-  }
-  public static Provenance newProvenance(Entry entry) {
-    Provenance list = new Provenance();
-    list.addEntry(entry);
-    return list;
-  }
-  public static Provenance newProvenance(String user, String action) {
-    return newProvenance(ProvenanceStuff.newProvenanceEntry("vamsasApp:ExampleVamsasClient/alpha", user, action));
-  }
-  public static Provenance newProvenance(String app, String user, String action) {
-    return newProvenance(ProvenanceStuff.newProvenanceEntry(app, user, action));
-  }
-
-}
+/*\r
+ * This file is part of the Vamsas Client version 0.1. \r
+ * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, \r
+ *  Andrew Waterhouse and Dominik Lindner.\r
+ * \r
+ * Earlier versions have also been incorporated into Jalview version 2.4 \r
+ * since 2008, and TOPALi version 2 since 2007.\r
+ * \r
+ * The Vamsas Client is free software: you can redistribute it and/or modify\r
+ * it under the terms of the GNU Lesser General Public License as published by\r
+ * the Free Software Foundation, either version 3 of the License, or\r
+ * (at your option) any later version.\r
+ *  \r
+ * The Vamsas Client is distributed in the hope that it will be useful,\r
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of\r
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the\r
+ * GNU Lesser General Public License for more details.\r
+ * \r
+ * You should have received a copy of the GNU Lesser General Public License\r
+ * along with the Vamsas Client.  If not, see <http://www.gnu.org/licenses/>.\r
+ */\r
+package uk.ac.vamsas.objects.utils;\r
+\r
+import java.util.Date;\r
+\r
+import org.apache.commons.logging.Log;\r
+import org.apache.commons.logging.LogFactory;\r
+\r
+import uk.ac.vamsas.objects.core.Entry;\r
+import uk.ac.vamsas.objects.core.Provenance;\r
+\r
+public class ProvenanceStuff {\r
+\r
+  /**\r
+   * stuff for making and doing things with provenance objects.\r
+   */\r
+  static Log log = LogFactory.getLog(ProvenanceStuff.class);\r
+\r
+  /**\r
+   * @param app\r
+   *          TODO\r
+   * @param action\r
+   *          text for action entry\r
+   * @return new Provenance entry for ArchiveWriter created docs. TODO: Verify\r
+   *         and move to SimpleClient class for provenance handling\r
+   */\r
+  public static Entry newProvenanceEntry(String app, String user, String action) {\r
+    log.debug("Adding ProvenanceEntry(" + user + "," + action + ")");\r
+    Entry e = new Entry();\r
+    e.setApp(app);\r
+    e.setAction(action);\r
+    e.setUser(user);\r
+    e.setDate(new Date());\r
+    return e;\r
+  }\r
+\r
+  public static Provenance newProvenance(Entry entry) {\r
+    Provenance list = new Provenance();\r
+    list.addEntry(entry);\r
+    return list;\r
+  }\r
+\r
+  public static Provenance newProvenance(String user, String action) {\r
+    return newProvenance(ProvenanceStuff.newProvenanceEntry(\r
+        "vamsasApp:ExampleVamsasClient/alpha", user, action));\r
+  }\r
+\r
+  public static Provenance newProvenance(String app, String user, String action) {\r
+    return newProvenance(ProvenanceStuff.newProvenanceEntry(app, user, action));\r
+  }\r
+\r
+}\r