applied LGPLv3 and source code formatting.

[vamsas.git] / src / uk / ac / vamsas / objects / utils / SymbolDictionary.java

diff --git a/src/uk/ac/vamsas/objects/utils/SymbolDictionary.java b/src/uk/ac/vamsas/objects/utils/SymbolDictionary.java
index b8ac66f..6cd81a8 100644 (file)
--- a/src/uk/ac/vamsas/objects/utils/SymbolDictionary.java
+++ b/src/uk/ac/vamsas/objects/utils/SymbolDictionary.java
@@ -1,19 +1,50 @@
-package uk.ac.vamsas.objects.utils;
-
-public class SymbolDictionary {
-  /**
-   * defines standard names and properties for vamsas sequence dictionaries
-   */
-  static final public String STANDARD_AA="info:iubmb.org/aminoacids"; // strict 1 letter code
-  static final public String STANDARD_NA="info:iubmb.org/nucleosides";// strict 1 letter code (do not allow arbitrary rare nucleosides)
-  /**
-   * TODO: Vamsas Dictionary properties interface
-   * an interface for dictionary provides :
-   * validation for a string
-   * symbolwidth (or symbol next/previous)
-   * mappings to certain other dictionaries (one2three, etc)
-   * gap-character test
-   * 
-   */
-  
-}
+/*\r
+ * This file is part of the Vamsas Client version 0.1. \r
+ * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, \r
+ *  Andrew Waterhouse and Dominik Lindner.\r
+ * \r
+ * Earlier versions have also been incorporated into Jalview version 2.4 \r
+ * since 2008, and TOPALi version 2 since 2007.\r
+ * \r
+ * The Vamsas Client is free software: you can redistribute it and/or modify\r
+ * it under the terms of the GNU Lesser General Public License as published by\r
+ * the Free Software Foundation, either version 3 of the License, or\r
+ * (at your option) any later version.\r
+ *  \r
+ * The Vamsas Client is distributed in the hope that it will be useful,\r
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of\r
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the\r
+ * GNU Lesser General Public License for more details.\r
+ * \r
+ * You should have received a copy of the GNU Lesser General Public License\r
+ * along with the Vamsas Client.  If not, see <http://www.gnu.org/licenses/>.\r
+ */\r
+package uk.ac.vamsas.objects.utils;\r
+\r
+public class SymbolDictionary {\r
+  /**\r
+   * defines standard names and properties for vamsas sequence dictionaries\r
+   */\r
+  static final public String STANDARD_AA = "info:iubmb.org/aminoacids"; // strict\r
+                                                                        // 1\r
+                                                                        // letter\r
+                                                                        // code\r
+\r
+  static final public String STANDARD_NA = "info:iubmb.org/nucleosides";// strict\r
+                                                                        // 1\r
+                                                                        // letter\r
+                                                                        // code\r
+                                                                        // (do\r
+                                                                        // not\r
+                                                                        // allow\r
+                                                                        // arbitrary\r
+                                                                        // rare\r
+                                                                        // nucleosides)\r
+  /**\r
+   * TODO: Vamsas Dictionary properties interface an interface for dictionary\r
+   * provides : validation for a string symbolwidth (or symbol next/previous)\r
+   * mappings to certain other dictionaries (one2three, etc) gap-character test\r
+   * \r
+   */\r
+\r
+}\r