+/*\r
+ * This file is part of the Vamsas Client version 0.1. \r
+ * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, \r
+ * Andrew Waterhouse and Dominik Lindner.\r
+ * \r
+ * Earlier versions have also been incorporated into Jalview version 2.4 \r
+ * since 2008, and TOPALi version 2 since 2007.\r
+ * \r
+ * The Vamsas Client is free software: you can redistribute it and/or modify\r
+ * it under the terms of the GNU Lesser General Public License as published by\r
+ * the Free Software Foundation, either version 3 of the License, or\r
+ * (at your option) any later version.\r
+ * \r
+ * The Vamsas Client is distributed in the hope that it will be useful,\r
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of\r
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the\r
+ * GNU Lesser General Public License for more details.\r
+ * \r
+ * You should have received a copy of the GNU Lesser General Public License\r
+ * along with the Vamsas Client. If not, see <http://www.gnu.org/licenses/>.\r
+ */\r
package uk.ac.vamsas.objects.utils;\r
\r
import java.io.IOException;\r
public class Trees {\r
\r
/**\r
- * TODO: implement\r
- * helper functions based on NewickFile tree parser\r
+ * TODO: implement helper functions based on NewickFile tree parser\r
* \r
- * 1. create a newickfile object from a newick string.\r
- * 2. let user map a vamsas object to each node by setting that node's ((SequenceNode)node).setElement(VorbaId) \r
- * 3. generate Tree object with newickString as a newick string, and added treenodes to record mapping to vorba ids\r
+ * 1. create a newickfile object from a newick string. 2. let user map a\r
+ * vamsas object to each node by setting that node's\r
+ * ((SequenceNode)node).setElement(VorbaId) 3. generate Tree object with\r
+ * newickString as a newick string, and added treenodes to record mapping to\r
+ * vorba ids\r
*/\r
- \r
+\r
}\r
git://source.jalview.org / vamsas.git / blobdiff